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S13_scaffold_434_curated

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Displaying items 1-30 of 46 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
S13_scaffold_434_curated_1
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2..316
DNA (315bp) protein (105aa)
putative outer membrane cation efflux protein id=5081009 bin=GWF1_Burkholderiales_GWF1_66_17 species=Hydrogenophaga sp. PL2G6 genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD
silC; silC, OMP component, silver resistance, three components proton antiporter efflux system
Tax=GWE1_Burkholderiales_65_30_curated
S13_scaffold_434_curated_2
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

313..1953
DNA (1641bp) protein (547aa)
secretion protein HlyD; K07798 Cu(I)/Ag(I) efflux system membrane protein CusB id=5081010 bin=GWF1_Burkholderiales_GWF1_66_17 species=Hydrogenophaga sp. PL2G6 genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD rbh
secretion protein HlyD rbh
Tax=GWE1_Burkholderiales_65_30_curated
S13_scaffold_434_curated_3
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1950..5105
DNA (3156bp) protein (1052aa)
CzcA family heavy metal efflux protein; K07787 Cu(I)/Ag(I) efflux system membrane protein CusA id=5081011 bin=GWF1_Burkholderiales_GWF1_66_17 species=Hydrogenophaga sp. PL2G6 genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD rbh
CzcA family heavy metal efflux protein rbh
Tax=GWE1_Burkholderiales_65_30_curated
S13_scaffold_434_curated_4
R_Burkholderiales_69_20, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5121..7316)
DNA (2196bp) protein (732aa)
Candidate cation transport ATPase n=1 Tax=Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543 / TTB310) RepID=F5Y5V8_RAMTT rbh
cation transport ATPase rbh
Tax=RIFCSPHIGHO2_12_FULL_Burkholderiales_69_20_curated
S13_scaffold_434_curated_5
R_Burkholderiales_69_20, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7454..7645
DNA (192bp) protein (64aa)
Uncharacterized protein id=1265441 bin=GWE1_Burkholderiales_65_30 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_Burkholderiales_65_30 organism_group=Betaproteobacteria
heavy metal transport/detoxification protein
Tax=RIFCSPHIGHO2_12_FULL_Burkholderiales_69_20_curated
S13_scaffold_434_curated_6
R_Burkholderiales_69_20, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7746..8288
DNA (543bp) protein (181aa)
Transcription regulator protein id=1265440 bin=GWE1_Burkholderiales_65_30 species=Acidovorax sp. KKS102 genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_Burkholderiales_65_30 organism_group=Betaproteobacteria
transcriptional regulator
Tax=RIFCSPHIGHO2_12_FULL_Burkholderiales_69_20_curated
S13_scaffold_434_curated_7
R_Burkholderiales_69_20, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8482..9204)
DNA (723bp) protein (241aa)
Putative integrase/recombinase n=1 Tax=Acidovorax sp. MUL2G8 RepID=Q1KY63_9BURK rbh
phage integrase family protein rbh
Tax=RIFCSPHIGHO2_12_FULL_Burkholderiales_69_20_curated
S13_scaffold_434_curated_8
Herbaspirillum sp. YR522, Herbaspirillum, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9268..9585)
DNA (318bp) protein (106aa)
hypothetical protein; K09771 hypothetical protein id=12495455 bin=THIO_HI species=unknown genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
UPF0060 membrane protein PMI40_04631 {ECO:0000256|HAMAP-Rule:MF_00010}; Flags: Precursor;; TaxID=1144342 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Herbaspirillum.;" source="Herbaspirillum sp. YR522.;"
hypothetical protein
S13_scaffold_434_curated_9
Hydrogenophaga sp. T4, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9612..10241)
DNA (630bp) protein (210aa)
Uncharacterized protein n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MSY2_9BURK
BsSco {ECO:0000313|EMBL:EWS65830.1}; TaxID=1437444 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. T4.;"
electron transport protein SCO1/SenC
S13_scaffold_434_curated_10

Not on your lists

comp(10259..10915)
DNA (657bp) protein (219aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K2EH88_9BACT rbh
Uncharacterized protein {ECO:0000313|EMBL:EKD97849.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
disulfide isomerase-like protein
S13_scaffold_434_curated_11

Not on your lists

comp(10912..11328)
DNA (417bp) protein (139aa)
Disulfide oxidoreductase n=1 Tax=uncultured bacterium RepID=K2DVJ9_9BACT
Disulfide oxidoreductase {ECO:0000313|EMBL:EKD97848.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
disulfide oxidoreductase
S13_scaffold_434_curated_12
RIFOXYC12_FULL_Burkholderiales_65_23_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11325..11849)
DNA (525bp) protein (175aa)
Lipoprotein signal peptidase n=1 Tax=Curvibacter putative symbiont of Hydra magnipapillata RepID=C9YBE4_9BURK
peptidase A8, signal peptidase II
Tax=RIFOXYC12_FULL_Burkholderiales_65_23_curated
S13_scaffold_434_curated_13

Not on your lists

comp(11982..12374)
DNA (393bp) protein (131aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K2DKN5_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EKD97846.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
hypothetical protein
S13_scaffold_434_curated_14
R_Burkholderiales_64_960, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12371..12787)
DNA (417bp) protein (139aa)
hypothetical protein id=12550147 bin=BDI species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria
hypothetical protein
Tax=RIFCSPHIGHO2_01_FULL_Burkholderiales_64_960_curated
S13_scaffold_434_curated_15
R_Curvibacter_63_18, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12747..13409)
DNA (663bp) protein (221aa)
Cation efflux protein n=1 Tax=Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) RepID=B1Y2T1_LEPCP rbh
cation efflux protein rbh
Tax=RIFCSPHIGHO2_12_FULL_Curvibacter_63_18_curated
S13_scaffold_434_curated_16
Hydrogenophaga sp. PBC, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13492..13929
DNA (438bp) protein (146aa)
MerR family transcriptional regulator n=1 Tax=Limnohabitans sp. Rim28 RepID=UPI00036766D2
MerR family transcriptional regulator {ECO:0000313|EMBL:EIK89208.1}; TaxID=795665 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. PBC.;"
MerR family transcriptional regulator
S13_scaffold_434_curated_17
BJP_08E140C01_Burkholderiales_65_30, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14923..15150)
DNA (228bp) protein (76aa)
hypothetical protein id=5079011 bin=GWF1_Burkholderiales_GWF1_66_17 species=Thiorhodospira sibirica genus=Thiorhodospira taxon_order=Chromatiales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD
hypothetical protein
Tax=BJP_08E140C01_Burkholderiales_65_30
S13_scaffold_434_curated_18
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15231..16955)
DNA (1725bp) protein (575aa)
soxB; sulfur oxidation protein SoxB id=5079010 bin=GWF1_Burkholderiales_GWF1_66_17 species=unknown genus=unknown taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD rbh
soxB; 5'-Nucleotidase domain protein
Tax=GWE1_Burkholderiales_65_30_curated
S13_scaffold_434_curated_19
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17079..17729)
DNA (651bp) protein (217aa)
Uncharacterized protein id=1267779 bin=GWE1_Burkholderiales_65_30 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_Burkholderiales_65_30 organism_group=Betaproteobacteria rbh
hypothetical protein
Tax=GWE1_Burkholderiales_65_30_curated
S13_scaffold_434_curated_20
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17745..18560)
DNA (816bp) protein (272aa)
hypothetical protein id=5079008 bin=GWF1_Burkholderiales_GWF1_66_17 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD rbh
hypothetical protein rbh
Tax=GWE1_Burkholderiales_65_30_curated
S13_scaffold_434_curated_21
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18643..18954)
DNA (312bp) protein (104aa)
sulfur compound chelating protein SoxZ id=5079007 bin=GWF1_Burkholderiales_GWF1_66_17 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD
sulfur compound chelating protein SoxZ
Tax=GWE1_Burkholderiales_65_30_curated
S13_scaffold_434_curated_22
BJP_08E140C01_Burkholderiales_65_30, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19020..19475)
DNA (456bp) protein (152aa)
hypothetical protein id=5079006 bin=GWF1_Burkholderiales_GWF1_66_17 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD
predicted secreted protein
Tax=BJP_08E140C01_Burkholderiales_65_30
S13_scaffold_434_curated_23
Hydrogenophaga sp. T4, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19507..19845)
DNA (339bp) protein (113aa)
Cytochrome c551 {ECO:0000313|EMBL:EWS66035.1}; TaxID=1437444 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. T4.;"
sulfite oxidation cytochrome c subunit 551/552 id=5079005 bin=GWF1_Burkholderiales_GWF1_66_17 species=unknown genus=Cupriavidus taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD
cytochrome c551/c552 h16_A3570
S13_scaffold_434_curated_24
Hydrogenophaga sp. T4, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19959..21041)
DNA (1083bp) protein (361aa)
Cytochrome c552 {ECO:0000313|EMBL:EWS66036.1}; TaxID=1437444 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. T4.;"
cytochrome c id=5079004 bin=GWF1_Burkholderiales_GWF1_66_17 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD rbh
cytochrome c rbh
S13_scaffold_434_curated_25
BJP_08E140C01_Burkholderiales_65_30, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21041..22384)
DNA (1344bp) protein (448aa)
Sulfite oxidase molybdopterin subunit id=1267773 bin=GWE1_Burkholderiales_65_30 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_Burkholderiales_65_30 organism_group=Betaproteobacteria rbh
soxC; sulfite oxidase molybdopterin subunit rbh
Tax=BJP_08E140C01_Burkholderiales_65_30
S13_scaffold_434_curated_26
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22377..22790)
DNA (414bp) protein (138aa)
ArsR family transcriptional regulator id=5079002 bin=GWF1_Burkholderiales_GWF1_66_17 species=Ralstonia sp. PBA genus=Ralstonia taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD
ArsR family transcriptional regulator
Tax=GWE1_Burkholderiales_65_30_curated
S13_scaffold_434_curated_27
Hydrogenophaga sp. T4, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23152..23454
DNA (303bp) protein (101aa)
Flavocytochrome c cytochrome subunit {ECO:0000313|EMBL:EWS64643.1}; TaxID=1437444 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. T4.;"
class I cytochrome c id=5079001 bin=GWF1_Burkholderiales_GWF1_66_17 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD
class I cytochrome c
S13_scaffold_434_curated_28
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23466..24746
DNA (1281bp) protein (427aa)
FAD-dependent pyridine nucleotide-disulfide oxidoreductase id=1267770 bin=GWE1_Burkholderiales_65_30 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_Burkholderiales_65_30 organism_group=Betaproteobacteria rbh
FAD-dependent pyridine nucleotide-disulfide oxidoreductase rbh
Tax=GWE1_Burkholderiales_65_30_curated
S13_scaffold_434_curated_29
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24817..25434
DNA (618bp) protein (206aa)
cytochrome c, class I id=5078999 bin=GWF1_Burkholderiales_GWF1_66_17 species=Thauera phenylacetica genus=Thauera taxon_order=Rhodocyclales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD rbh
cytochrome c, class I
Tax=GWE1_Burkholderiales_65_30_curated
S13_scaffold_434_curated_30
BJP_08E140C01_Burkholderiales_65_30, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25576..26643)
DNA (1068bp) protein (356aa)
cbbA; fructose-1,6-bisphosphate aldolase (EC:4.1.2.13); K01624 fructose-bisphosphate aldolase, class II [EC:4.1.2.13] id=5078998 bin=GWF1_Burkholderiales_GWF1_66_17 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD rbh
fbaA-2; fructose/tagatose bisphosphate aldolase
Tax=BJP_08E140C01_Burkholderiales_65_30
Displaying items 1-30 of 46 in total

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