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S13_scaffold_748_curated

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Displaying 8 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
S13_scaffold_748_curated_1
Hydrogenophaga sp. PBC, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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1..156
DNA (156bp) protein (52aa)
Trap-type c4-dicarboxylate large permease subunit n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MPP8_9BURK
Trap-type c4-dicarboxylate large permease subunit {ECO:0000313|EMBL:EIK91188.1}; TaxID=795665 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. PBC.;"
S13_scaffold_748_curated_2
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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316..2085
DNA (1770bp) protein (590aa)
Diguanylate cyclase (GGDEF) domain-containing protein id=1262087 bin=GWE1_Burkholderiales_65_30 species=Polaromonas sp. CF318 genus=Polaromonas taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_Burkholderiales_65_30 organism_group=Betaproteobacteria rbh
diguanylate cyclase
Tax=GWE1_Burkholderiales_65_30_curated
S13_scaffold_748_curated_3
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(2034..5117)
DNA (3084bp) protein (1028aa)
membrane carboxypeptidase id=5079527 bin=GWF1_Burkholderiales_GWF1_66_17 species=unknown genus=Thauera taxon_order=Rhodocyclales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD rbh
membrane carboxypeptidase rbh
Tax=GWE1_Burkholderiales_65_30_curated
S13_scaffold_748_curated_4
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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5231..7540
DNA (2310bp) protein (770aa)
1A family penicillin-binding protein (EC:2.4.1.129); K05366 penicillin-binding protein 1A [EC:2.4.1.- 3.4.-.-] id=5079526 bin=GWF1_Burkholderiales_GWF1_66_17 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD rbh
1A family penicillin-binding protein (EC:2.4.1.129) rbh
Tax=GWE1_Burkholderiales_65_30_curated
S13_scaffold_748_curated_5
R_Burkholderiales_67_14, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(7609..8589)
DNA (981bp) protein (327aa)
2-nitropropane dioxygenase; K00459 nitronate monooxygenase [EC:1.13.12.16] id=5079525 bin=GWF1_Burkholderiales_GWF1_66_17 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD rbh
2-nitropropane dioxygenase
Tax=RifCSPlowO2_12_Burkholderiales_67_14_curated
S13_scaffold_748_curated_6
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(8679..10469)
DNA (1791bp) protein (597aa)
acyl-CoA dehydrogenase-like protein; K00257 [EC:1.3.99.-] id=5079524 bin=GWF1_Burkholderiales_GWF1_66_17 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD rbh
acyl-CoA dehydrogenase-like protein rbh
Tax=GWE1_Burkholderiales_65_30_curated
S13_scaffold_748_curated_7
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10551..11483)
DNA (933bp) protein (311aa)
electron transfer flavoprotein subunit alpha; K03522 electron transfer flavoprotein alpha subunit id=5079523 bin=GWF1_Burkholderiales_GWF1_66_17 species=unknown genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD rbh
electron transfer flavoprotein subunit alpha rbh
Tax=GWE1_Burkholderiales_65_30_curated
S13_scaffold_748_curated_8
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11521..11739)
DNA (219bp) protein (73aa)
electron transfer flavoprotein alpha/beta-subunit; K03521 electron transfer flavoprotein beta subunit id=5079522 bin=GWF1_Burkholderiales_GWF1_66_17 species=Albidiferax ferrireducens genus=Albidiferax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD
electron transfer flavoprotein alpha/beta-subunit
Tax=GWE1_Burkholderiales_65_30_curated
Displaying 8 items

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