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S13_scaffold_250_curated

Search features with annotation key words

Displaying 27 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
S13_scaffold_250_curated_1
BJP_08E140C01_Burkholderiales_65_30, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3..692)
DNA (690bp) protein (230aa)
20s a and b subunit id=1274354 bin=GWE1_Burkholderiales_65_30 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_Burkholderiales_65_30 organism_group=Betaproteobacteria rbh
20S proteasome subunits A/B rbh
Tax=BJP_08E140C01_Burkholderiales_65_30
S13_scaffold_250_curated_2
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(689..3289)
DNA (2601bp) protein (867aa)
DNA mismatch repair protein MutS; K03555 DNA mismatch repair protein MutS id=5079214 bin=GWF1_Burkholderiales_GWF1_66_17 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD rbh
DNA mismatch repair protein MutS rbh
Tax=GWE1_Burkholderiales_65_30_curated
S13_scaffold_250_curated_3
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3825..25238
DNA (21414bp) protein (7138aa)
Type I secretion target repeat protein id=1274352 bin=GWE1_Burkholderiales_65_30 species=Oceanicola granulosus genus=Oceanicola taxon_order=Rhodobacterales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWE1_Burkholderiales_65_30 organism_group=Betaproteobacteria rbh
filamentous hemagglutinin family outer membrane protein rbh
Tax=GWE1_Burkholderiales_65_30_curated
S13_scaffold_250_curated_4
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25238..26899
DNA (1662bp) protein (554aa)
polypeptide-transport-associated domain-containing protein ShlB-type id=5079216 bin=GWF1_Burkholderiales_GWF1_66_17 species=unknown genus=Thauera taxon_order=Rhodocyclales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD rbh
polypeptide-transport-associated domain-containing protein ShlB-type rbh
Tax=GWE1_Burkholderiales_65_30_curated
S13_scaffold_250_curated_5
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27091..30399
DNA (3309bp) protein (1103aa)
PAS domain S-box id=5079217 bin=GWF1_Burkholderiales_GWF1_66_17 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD rbh
PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase rbh
Tax=GWE1_Burkholderiales_65_30_curated
S13_scaffold_250_curated_6
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30421..31344)
DNA (924bp) protein (308aa)
suhB; inositol monophosphatase; K01092 myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25] id=5079218 bin=GWF1_Burkholderiales_GWF1_66_17 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD rbh
suhB; inositol monophosphatase rbh
Tax=GWE1_Burkholderiales_65_30_curated
S13_scaffold_250_curated_7
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

31594..32346
DNA (753bp) protein (251aa)
RNA methyltransferase TrmH; K02533 tRNA/rRNA methyltransferase [EC:2.1.1.-] id=5079219 bin=GWF1_Burkholderiales_GWF1_66_17 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD rbh
RNA methyl transferase TrmH rbh
Tax=GWE1_Burkholderiales_65_30_curated
S13_scaffold_250_curated_8
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

32385..33155
DNA (771bp) protein (257aa)
Serine acetyltransferase id=1274347 bin=GWE1_Burkholderiales_65_30 species=unknown genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_Burkholderiales_65_30 organism_group=Betaproteobacteria rbh
serine O-acetyltransferase rbh
Tax=GWE1_Burkholderiales_65_30_curated
S13_scaffold_250_curated_9
BJP_08E140C01_Burkholderiales_65_30, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(33448..33924)
DNA (477bp) protein (159aa)
FKBP-type peptidylprolyl isomerase; K03775 FKBP-type peptidyl-prolyl cis-trans isomerase SlyD [EC:5.2.1.8] id=5079221 bin=GWF1_Burkholderiales_GWF1_66_17 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD rbh
FKBP-type peptidylprolyl isomerase
Tax=BJP_08E140C01_Burkholderiales_65_30
S13_scaffold_250_curated_10
BJP_08E140C01_Burkholderiales_65_30, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(34061..34645)
DNA (585bp) protein (195aa)
Molybdenum cofactor synthesis domain protein id=1274344 bin=GWE1_Burkholderiales_65_30 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_Burkholderiales_65_30 organism_group=Betaproteobacteria rbh
molybdenum cofactor synthesis domain-containing protein rbh
Tax=BJP_08E140C01_Burkholderiales_65_30
S13_scaffold_250_curated_11
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(34649..35308)
DNA (660bp) protein (220aa)
hypothetical protein; K09889 ribosome-associated protein id=5079224 bin=GWF1_Burkholderiales_GWF1_66_17 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD rbh
hypothetical protein
Tax=GWE1_Burkholderiales_65_30_curated
S13_scaffold_250_curated_12
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

35381..36817
DNA (1437bp) protein (479aa)
Microcin-processing peptidase 1 id=1274342 bin=GWE1_Burkholderiales_65_30 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_Burkholderiales_65_30 organism_group=Betaproteobacteria rbh
pmbA; PmbA protein rbh
Tax=GWE1_Burkholderiales_65_30_curated
S13_scaffold_250_curated_13
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

36889..37776
DNA (888bp) protein (296aa)
hypothetical protein id=5079226 bin=GWF1_Burkholderiales_GWF1_66_17 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD rbh
hypothetical protein rbh
Tax=GWE1_Burkholderiales_65_30_curated
S13_scaffold_250_curated_14
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(37918..38364)
DNA (447bp) protein (149aa)
GatB/YqeY domain-containing protein id=1274340 bin=GWE1_Burkholderiales_65_30 species=unknown genus=Polaromonas taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_Burkholderiales_65_30 organism_group=Betaproteobacteria
hypothetical protein
Tax=GWE1_Burkholderiales_65_30_curated
S13_scaffold_250_curated_15
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(38420..39685)
DNA (1266bp) protein (422aa)
diaminopimelate decarboxylase; K01586 diaminopimelate decarboxylase [EC:4.1.1.20] id=5079228 bin=GWF1_Burkholderiales_GWF1_66_17 species=unknown genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD rbh
diaminopimelate decarboxylase (EC:4.1.1.20) rbh
Tax=GWE1_Burkholderiales_65_30_curated
S13_scaffold_250_curated_16
BJP_08E140C01_Burkholderiales_65_30, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

39728..40648
DNA (921bp) protein (307aa)
LysR family transcriptional regulator id=5079229 bin=GWF1_Burkholderiales_GWF1_66_17 species=Achromobacter arsenitoxydans genus=Achromobacter taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD rbh
LysR family transcriptional regulator rbh
Tax=BJP_08E140C01_Burkholderiales_65_30
S13_scaffold_250_curated_17
BJP_08E140C01_Burkholderiales_65_30, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(40710..40922)
DNA (213bp) protein (71aa)
30S ribosomal protein S21 id=1274337 bin=GWE1_Burkholderiales_65_30 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWE1_Burkholderiales_65_30 organism_group=Betaproteobacteria
30S ribosomal protein S21
Tax=BJP_08E140C01_Burkholderiales_65_30
S13_scaffold_250_curated_18
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(41116..42336)
DNA (1221bp) protein (407aa)
hypothetical protein; K07007 id=5079231 bin=GWF1_Burkholderiales_GWF1_66_17 species=unknown genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD rbh
hypothetical protein rbh
Tax=GWE1_Burkholderiales_65_30_curated
S13_scaffold_250_curated_19
BJP_08E140C01_Burkholderiales_65_30, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(42487..43167)
DNA (681bp) protein (227aa)
Methyl-accepting chemotaxis protein n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MHG0_9BURK rbh
methyl-accepting chemotaxis protein
Tax=BJP_08E140C01_Burkholderiales_65_30
S13_scaffold_250_curated_20
BJP_08E140C01_Burkholderiales_65_30, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(43310..44731)
DNA (1422bp) protein (474aa)
FAD linked oxidase-like protein n=1 Tax=Polaromonas sp. (strain JS666 / ATCC BAA-500) RepID=Q127K5_POLSJ rbh
FAD linked oxidase-like protein rbh
Tax=BJP_08E140C01_Burkholderiales_65_30
S13_scaffold_250_curated_21
BJP_08E140C01_Burkholderiales_65_30, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(44749..45735)
DNA (987bp) protein (329aa)
nitrilase (EC:3.5.5.7) rbh
Nitrilase n=1 Tax=Pseudomonas fluorescens NCIMB 11764 RepID=U7DER6_PSEFL rbh
Tax=BJP_08E140C01_Burkholderiales_65_30
S13_scaffold_250_curated_22
BJP_08E140C01_Burkholderiales_65_30, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

45857..46573
DNA (717bp) protein (239aa)
Putative transcriptional regulator n=1 Tax=Pseudomonas sp. G5(2012) RepID=S2EPQ0_9PSED rbh
HxlR family transcriptional regulator
Tax=BJP_08E140C01_Burkholderiales_65_30
S13_scaffold_250_curated_23
BJP_08E140C01_Burkholderiales_65_30, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(46600..47445)
DNA (846bp) protein (282aa)
uroporphyrin-III C-methyltransferase (EC:2.1.1.107); K02303 uroporphyrin-III C-methyltransferase [EC:2.1.1.107] id=5079234 bin=GWF1_Burkholderiales_GWF1_66_17 species=unknown genus=Delftia taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD rbh
uroporphyrin-III C-methyltransferase (EC:2.1.1.107) rbh
Tax=BJP_08E140C01_Burkholderiales_65_30
S13_scaffold_250_curated_24
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(47442..48398)
DNA (957bp) protein (319aa)
glycosyl transferase family protein id=5079235 bin=GWF1_Burkholderiales_GWF1_66_17 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD rbh
glycosyl transferase family protein rbh
Tax=GWE1_Burkholderiales_65_30_curated
S13_scaffold_250_curated_25
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(48459..51299)
DNA (2841bp) protein (947aa)
molybdopterin oxidoreductase; K00372 nitrate reductase catalytic subunit [EC:1.7.99.4] id=5079236 bin=GWF1_Burkholderiales_GWF1_66_17 species=unknown genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD rbh
molybdopterin oxidoreductase rbh
Tax=GWE1_Burkholderiales_65_30_curated
S13_scaffold_250_curated_26
BJP_08E140C01_Burkholderiales_65_30, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(51316..51717)
DNA (402bp) protein (134aa)
Nitrite reductase (NAD(P)H), small subunit id=1274330 bin=GWE1_Burkholderiales_65_30 species=unknown genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_Burkholderiales_65_30 organism_group=Betaproteobacteria
nitrite reductase (NAD(P)H) small subunit
Tax=BJP_08E140C01_Burkholderiales_65_30
S13_scaffold_250_curated_27
BJP_08E140C01_Burkholderiales_65_30, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(51728..51889)
DNA (162bp) protein (54aa)
hypothetical protein n=1 Tax=Curvibacter lanceolatus RepID=UPI0003742EBD
hypothetical protein
Tax=BJP_08E140C01_Burkholderiales_65_30
Displaying 27 items

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