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S13_scaffold_145_curated

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Displaying items 1-30 of 73 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
S13_scaffold_145_curated_1
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(266..1570)
DNA (1305bp) protein (435aa)
Uncharacterized protein n=1 Tax=Roseovarius nubinhibens ISM RepID=A3SJ50_9RHOB rbh
Putative Oxidoreductase {ECO:0000313|EMBL:KFC64671.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
oxidoreductase rbh
S13_scaffold_145_curated_2
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1567..3075)
DNA (1509bp) protein (503aa)
Aldehyde dehydrogenase {ECO:0000313|EMBL:EYR81285.1}; EC=1.2.99.3 {ECO:0000313|EMBL:EYR81285.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
betaine-aldehyde dehydrogenase (EC:1.2.1.8) rbh
Aldehyde dehydrogenase family protein n=1 Tax=Labrenzia aggregata IAM 12614 RepID=A0NXN1_9RHOB rbh
S13_scaffold_145_curated_3
Roseovarius nubinhibens, Roseovarius, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3072..4181)
DNA (1110bp) protein (370aa)
Mandelate racemase/muconate lactonizing enzyme family protein n=1 Tax=Roseovarius nubinhibens ISM RepID=A3SMJ4_9RHOB rbh
Mandelate racemase/muconate lactonizing enzyme family protein {ECO:0000313|EMBL:EAP75684.1}; TaxID=89187 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Roseovarius.;" source="Roseovarius nubinhibens ISM.;"
mandelate racemase rbh
S13_scaffold_145_curated_4
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4385..5926
DNA (1542bp) protein (514aa)
Transcriptional regulator, GntR family with aminotransferase domain-containing protein n=1 Tax=Rhizobium sp. PDO1-076 RepID=H4F5V3_9RHIZ rbh
Putative rhizopine catabolism regulatory protein MocR {ECO:0000313|EMBL:EYR81283.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
GntR family transcriptional regulator/MocR family aminotransferase rbh
S13_scaffold_145_curated_5
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5936..7552
DNA (1617bp) protein (539aa)
Alcohol dehydrogenase {ECO:0000313|EMBL:EYR81282.1}; EC=1.1.99.- {ECO:0000313|EMBL:EYR81282.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
Alcohol dehydrogenase n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EZ64_9RHIZ rbh
GMC family oxidoreductase rbh
S13_scaffold_145_curated_6
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7697..8755
DNA (1059bp) protein (353aa)
Spermidine/putrescine ABC transporter, periplasmic substrate-binding protein n=1 Tax=Roseovarius sp. TM1035 RepID=A6E1P7_9RHOB rbh
ABC transporter substrate-binding protein {ECO:0000313|EMBL:KFC64670.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
polyamine ABC transporter periplasmic binding protein rbh
S13_scaffold_145_curated_7
Roseobacter denitrificans, Roseobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8850..9941
DNA (1092bp) protein (364aa)
Polyamine-transporting ATPase {ECO:0000256|SAAS:SAAS00083160}; EC=3.6.3.31 {ECO:0000256|SAAS:SAAS00083160};; TaxID=375451 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Roseobacter.;" source="Roseobacter denitrificans (strain ATCC 33942 / OCh 114) (Erythrobacter; sp. (strain OCh 114)) (Roseobacter denitrificans).;"
Spermidine/putrescine ABC transporter, ATP-binding protein n=1 Tax=Roseobacter denitrificans (strain ATCC 33942 / OCh 114) RepID=Q161L7_ROSDO rbh
spermidine/putrescine ABC transporter ATP-binding protein rbh
S13_scaffold_145_curated_8
Roseovarius mucosus, Roseovarius, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9938..10834
DNA (897bp) protein (299aa)
Spermidine/putrescine ABC transporter, permease protein n=1 Tax=Roseovarius sp. 217 RepID=A3W1S5_9RHOB rbh
ABC-type spermidine/putrescine transport system, permease component I {ECO:0000313|EMBL:KGM87484.1}; TaxID=1288298 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Roseovarius.;" source="Roseovarius mucosus DSM 17069.;"
ABC transporter permease
S13_scaffold_145_curated_9
Roseobacter litoralis, Roseobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10831..11649
DNA (819bp) protein (273aa)
Putative ABC transporter permease protein n=1 Tax=Roseobacter litoralis (strain ATCC 49566 / DSM 6996 / JCM 21268 / NBRC 15278 / OCh 149) RepID=F7ZJG9_ROSLO rbh
ABC transporter permease rbh
Putative ABC transporter permease protein {ECO:0000313|EMBL:AEI92601.1}; TaxID=391595 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Roseobacter.;" source="Roseobacter litoralis (strain ATCC 49566 / DSM 6996 / JCM 21268 / NBRC; 15278 / OCh 149).;"
S13_scaffold_145_curated_10
Chelativorans sp. BNC1, Chelativorans, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11663..12970
DNA (1308bp) protein (436aa)
FAD dependent oxidoreductase n=1 Tax=Mesorhizobium sp. (strain BNC1) RepID=Q11H66_MESSB rbh
FAD dependent oxidoreductase rbh
FAD dependent oxidoreductase {ECO:0000313|EMBL:ABG63259.1}; TaxID=266779 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Chelativorans.;" source="Chelativorans sp. (strain BNC1).;"
S13_scaffold_145_curated_11
Marinomonas sp. MWYL1, Marinomonas, Oceanospirillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13100..14407)
DNA (1308bp) protein (436aa)
TRAP dicarboxylate transporter, DctM subunit n=1 Tax=Marinomonas sp. (strain MWYL1) RepID=A6VR96_MARMS rbh
TRAP dicarboxylate transporter subunit DctM rbh
TRAP dicarboxylate transporter, DctM subunit {ECO:0000313|EMBL:ABR68975.1}; Flags: Precursor;; TaxID=400668 species="Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillales; Marinomonas.;" source="Marinomonas sp. (strain MWYL1).;"
S13_scaffold_145_curated_12
Sulfurospirillum barnesii, Sulfurospirillum, Campylobacterales, Epsilonproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14404..14916)
DNA (513bp) protein (171aa)
TRAP-type mannitol/chloroaromatic compound transport system, small permease component n=1 Tax=Sulfurospirillum barnesii (strain ATCC 700032 / DSM 10660 / SES-3) RepID=I3XX06_SULBS
TRAP-type mannitol/chloroaromatic compound transport system, small permease component
TRAP-type mannitol/chloroaromatic compound transport system, small permease component {ECO:0000313|EMBL:AFL68480.1}; Flags: Precursor;; TaxID=760154 species="Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; Campylobacteraceae; Sulfurospirillum.;" source="Sulfurospirillum barnesii (strain ATCC 700032 / DSM 10660 / SES-3).;"
S13_scaffold_145_curated_13
Marinomonas sp. MWYL1, Marinomonas, Oceanospirillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14923..15948)
DNA (1026bp) protein (342aa)
C4-dicarboxylate ABC transporter substrate-binding protein n=1 Tax=Vibrio gazogenes RepID=UPI0003941A7D rbh
TRAP dicarboxylate transporter subunit DctP rbh
TRAP dicarboxylate transporter-DctP subunit {ECO:0000313|EMBL:ABR68977.1}; Flags: Precursor;; TaxID=400668 species="Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillales; Marinomonas.;" source="Marinomonas sp. (strain MWYL1).;"
S13_scaffold_145_curated_14
Paracoccus denitrificans, Paracoccus, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15972..16901)
DNA (930bp) protein (310aa)
Uncharacterized protein n=1 Tax=Paracoccus denitrificans (strain Pd 1222) RepID=A1AZ89_PARDP rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:ABL68583.1}; TaxID=318586 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Paracoccus.;" source="Paracoccus denitrificans (strain Pd 1222).;"
S13_scaffold_145_curated_15
Achromobacter xylosoxidans, Achromobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16898..17845)
DNA (948bp) protein (316aa)
3-hydroxyacyl-CoA dehydrogenase, C-terminal domain protein 4 n=1 Tax=Achromobacter xylosoxidans (strain A8) RepID=E3HLG9_ACHXA
3-hydroxyacyl-CoA dehydrogenase, C-terminal domain-containing protein 4
3-hydroxyacyl-CoA dehydrogenase, C-terminal domain protein 4 {ECO:0000313|EMBL:ADP18170.1}; TaxID=762376 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Achromobacter.;" source="Achromobacter xylosoxidans (strain A8).;"
S13_scaffold_145_curated_16
Skermanella stibiiresistens, Skermanella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17912..18940)
DNA (1029bp) protein (343aa)
hypothetical protein n=1 Tax=Rhizobium giardinii RepID=UPI000382619D
Uncharacterized protein {ECO:0000313|EMBL:EWY37759.1}; TaxID=1385369 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Skermanella.;" source="Skermanella stibiiresistens SB22.;"
inner-membrane translocator
S13_scaffold_145_curated_17
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18940..19824)
DNA (885bp) protein (295aa)
High-affinity branched-chain amino acid transport system permease protein LivH n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CBF9_9RHIZ rbh
High-affinity branched-chain amino acid transport system permease protein LivH {ECO:0000313|EMBL:EYR84566.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
livH1; high-affinity branched-chain amino acid transport system permease LivH rbh
S13_scaffold_145_curated_18
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

comp(19821..20549)
DNA (729bp) protein (243aa)
ABC-type branched-chain amino acid transport system, ATPase component id=3434010 bin=GWF2_Methylomirabilis_70_14 species=Variovorax sp. CF313 genus=Variovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
ABC transporter
Tax=GWA2_Rokubacteria_70_23_curated
S13_scaffold_145_curated_19
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20536..21264)
DNA (729bp) protein (243aa)
ABC transporter related n=1 Tax=Rhizobium leguminosarum bv. trifolii (strain WSM2304) RepID=B6A506_RHILW
ABC transporter
ABC transporter related {ECO:0000313|EMBL:ACI59489.1}; TaxID=395492 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii (strain WSM2304).;"
S13_scaffold_145_curated_20
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21296..22468)
DNA (1173bp) protein (391aa)
Extracellular ligand-binding receptor n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D0B7_9RHIZ rbh
Amino acid/amide ABC transporter substrate-binding protein, HAAT family {ECO:0000313|EMBL:EYR84564.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
extracellular ligand-binding receptor rbh
S13_scaffold_145_curated_21
Cupriavidus basilensis, Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22501..24246)
DNA (1746bp) protein (582aa)
N-methylhydantoinase B (EC:3.5.2.14)
Cupriavidus basilensis strain 4G11 chromosome main, complete sequence {ECO:0000313|EMBL:AJG19473.1}; EC=3.5.2.14 {ECO:0000313|EMBL:AJG19473.1};; TaxID=68895 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupriavidus basilensis.;"
hydantoinase n=1 Tax=Cupriavidus sp. UYPR2.512 RepID=UPI00036DCA0C rbh
S13_scaffold_145_curated_22
Cupriavidus basilensis, Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24264..26327)
DNA (2064bp) protein (688aa)
N-methylhydantoinase A (EC:3.5.2.14)
Cupriavidus basilensis strain 4G11 chromosome main, complete sequence {ECO:0000313|EMBL:AJG19472.1}; EC=3.5.2.14 {ECO:0000313|EMBL:AJG19472.1};; TaxID=68895 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupriavidus basilensis.;"
hypothetical protein n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI0002D59E98 rbh
S13_scaffold_145_curated_23
Acidovorax sp. CF316, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26356..27672)
DNA (1317bp) protein (439aa)
glutamate-1-semialdehyde 2,1-aminomutase (EC:5.4.3.8) rbh
Glutamate-1-semialdehyde aminotransferase n=1 Tax=Acidovorax sp. CF316 RepID=J0TZZ9_9BURK rbh
Glutamate-1-semialdehyde aminotransferase {ECO:0000313|EMBL:EJE49477.1}; Flags: Precursor;; TaxID=1144317 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. CF316.;"
S13_scaffold_145_curated_24
Cupriavidus basilensis, Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27719..28489)
DNA (771bp) protein (257aa)
3-oxoacyl-[acyl-carrier protein] reductase (EC:1.1.1.100)
Cupriavidus basilensis strain 4G11 chromosome main, complete sequence {ECO:0000313|EMBL:AJG19470.1}; EC=1.1.1.100 {ECO:0000313|EMBL:AJG19470.1};; TaxID=68895 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupriavidus basilensis.;"
UPI0003CE771D related cluster n=1 Tax=unknown RepID=UPI0003CE771D
S13_scaffold_145_curated_25
Pseudooceanicola atlanticus, Pseudooceanicola, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28704..29408
DNA (705bp) protein (235aa)
Transcriptional regulator, GntR family n=1 Tax=Paracoccus denitrificans (strain Pd 1222) RepID=A1AZ88_PARDP
Uncharacterized protein {ECO:0000313|EMBL:KGM49562.1}; TaxID=1461694 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Oceanicola.;" source="Oceanicola sp. 22II-S11g.;"
GntR family transcriptional regulator
S13_scaffold_145_curated_26
Mesorhizobium sp. L48C026A00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29889..31727
DNA (1839bp) protein (613aa)
ATP-dependent zinc metalloprotease FtsH {ECO:0000256|HAMAP-Rule:MF_01458}; EC=3.4.24.- {ECO:0000256|HAMAP-Rule:MF_01458};; TaxID=1287182 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L48C026A00.;"
UPI0003CFD49E related cluster n=1 Tax=unknown RepID=UPI0003CFD49E rbh
ATP-dependent metalloprotease FtsH rbh
S13_scaffold_145_curated_27
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

32525..32917
DNA (393bp) protein (131aa)
Putative uncharacterized protein n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0I196_9RHIZ
Putative uncharacterized protein {ECO:0000313|EMBL:EHK53258.1}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
hypothetical protein
S13_scaffold_145_curated_28
Mesorhizobium sp. ORS3359, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

32961..34751
DNA (1791bp) protein (597aa)
Poly(3-hydroxyalkanoate) polymerase {ECO:0000313|EMBL:CDX29272.1}; EC=2.3.1.- {ECO:0000313|EMBL:CDX29272.1};; TaxID=1505933 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. ORS3359.;"
Poly(3-hydroxyalkanoate) polymerase n=1 Tax=Nitratireductor indicus C115 RepID=K2N8A8_9RHIZ rbh
poly(3-hydroxyalkanoate) polymerase rbh
S13_scaffold_145_curated_29
Ectothiorhodospira sp. PHS-1, Ectothiorhodospira, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

34850..36223
DNA (1374bp) protein (458aa)
Amino acid carrier protein n=1 Tax=Ectothiorhodospira sp. PHS-1 RepID=H1G5M7_9GAMM rbh
Amino acid carrier protein {ECO:0000313|EMBL:EHQ53114.1}; TaxID=519989 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Ectothiorhodospiraceae; Ectothiorhodospira.;" source="Ectothiorhodospira sp. PHS-1.;"
ACGS family amino acid carrier protein
S13_scaffold_145_curated_30
Rhizobium sp. YS-1r, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

36307..38097
DNA (1791bp) protein (597aa)
AMP-dependent synthetase and ligase n=1 Tax=Novosphingobium pentaromativorans US6-1 RepID=G6E6V4_9SPHN rbh
Acetyl-CoA synthetase {ECO:0000313|EMBL:KGD99974.1}; TaxID=1532558 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. YS-1r.;"
acetyl-CoA synthetase
Displaying items 1-30 of 73 in total

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