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S13_scaffold_433_curated

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Displaying 26 items
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
S13_scaffold_433_curated_1
Mesorhizobium sp. L48C026A00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

34..588
DNA (555bp) protein (185aa)
UPI0003CFCAE3 related cluster n=1 Tax=unknown RepID=UPI0003CFCAE3
Resolvase {ECO:0000313|EMBL:ESZ19612.1}; TaxID=1287182 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L48C026A00.;"
resolvase domain-containing protein
S13_scaffold_433_curated_2
Devosia limi, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(971..2461)
DNA (1491bp) protein (497aa)
Uncharacterized protein n=1 Tax=Sagittula stellata E-37 RepID=A3K879_9RHOB rbh
C4-dicarboxylate ABC transporter permease {ECO:0000313|EMBL:KKB86065.1}; TaxID=1121477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia limi DSM 17137.;"
hypothetical protein rbh
S13_scaffold_433_curated_3
Devosia limi, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2458..2934)
DNA (477bp) protein (159aa)
Uncharacterized protein n=1 Tax=Polaromonas sp. (strain JS666 / ATCC BAA-500) RepID=Q128W8_POLSJ
Uncharacterized protein {ECO:0000313|EMBL:KKB86064.1}; TaxID=1121477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia limi DSM 17137.;"
hypothetical protein
S13_scaffold_433_curated_4
Devosia limi, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2938..3912)
DNA (975bp) protein (325aa)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002E65FF5 rbh
ABC transporter substrate-binding protein {ECO:0000313|EMBL:KKB86063.1}; TaxID=1121477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia limi DSM 17137.;"
hypothetical protein
S13_scaffold_433_curated_5
Devosia limi, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3944..4678)
DNA (735bp) protein (245aa)
GntR domain protein n=1 Tax=Burkholderia phytofirmans (strain DSM 17436 / PsJN) RepID=B2T4V6_BURPP
Uncharacterized protein {ECO:0000313|EMBL:KKB86062.1}; TaxID=1121477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia limi DSM 17137.;"
GntR family transcriptional regulator
S13_scaffold_433_curated_6
Devosia limi, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4680..5327)
DNA (648bp) protein (216aa)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002EA8FE3 rbh
Methyltransferase {ECO:0000313|EMBL:KKB86061.1}; TaxID=1121477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia limi DSM 17137.;"
putative Demethylmenaquinone methyltransferase
S13_scaffold_433_curated_7
Devosia limi, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5486..6373
DNA (888bp) protein (296aa)
dihydrodipicolinate synthetase n=1 Tax=SAR324 cluster bacterium JCVI-SC AAA005 RepID=UPI0002625B6E
Uncharacterized protein {ECO:0000313|EMBL:KKB86060.1}; TaxID=1121477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia limi DSM 17137.;"
dapA; dihydrodipicolinate synthase
S13_scaffold_433_curated_8
Nocardia farcinica, Nocardia, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

6479..7285
DNA (807bp) protein (269aa)
echA14; enoyl-CoA hydratase (EC:4.2.1.17)
Putative enoyl-CoA hydratase/isomerase family protein n=1 Tax=Nocardia farcinica (strain IFM 10152) RepID=Q5YVF8_NOCFA
Putative enoyl-CoA hydratase/isomerase family protein {ECO:0000313|EMBL:BAD57833.1}; TaxID=247156 species="Bacteria; Actinobacteria; Corynebacteriales; Nocardiaceae; Nocardia.;" source="Nocardia farcinica (strain IFM 10152).;"
S13_scaffold_433_curated_9
Brevundimonas diminuta, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7383..8621
DNA (1239bp) protein (413aa)
putative CoA-transferase (EC:2.8.3.-) rbh
CoA-transferase family III family protein n=1 Tax=Brevundimonas diminuta ATCC 11568 RepID=F4QV29_BREDI rbh
CoA-transferase family III family protein {ECO:0000313|EMBL:EGF96458.1}; TaxID=751586 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas diminuta ATCC 11568.;"
S13_scaffold_433_curated_10
Acidisphaera rubrifaciens, Acidisphaera, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8724..9896
DNA (1173bp) protein (391aa)
hypothetical protein n=1 Tax=Cupriavidus sp. WS RepID=UPI00037C0A7D
Alcohol dehydrogenase iron-containing {ECO:0000313|EMBL:GAN76726.1}; TaxID=1231350 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidisphaera.;" source="Acidisphaera rubrifaciens HS-AP3.;"
alcohol dehydrogenase
S13_scaffold_433_curated_11
alpha proteobacterium MA2, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9898..11049
DNA (1152bp) protein (384aa)
Acyl-CoA dehydrogenase domain-containing protein {ECO:0000313|EMBL:GAK45151.1}; TaxID=1333998 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium MA2.;"
Acyl-CoA dehydrogenase domain protein id=4412860 bin=GWF2_Methylomirabilis_70_14 species=Parvibaculum lavamentivorans genus=Parvibaculum taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis rbh
acyl-CoA dehydrogenase domain-containing protein rbh
S13_scaffold_433_curated_12
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11046..12092
DNA (1047bp) protein (349aa)
Acyl-CoA dehydrogenase domain protein n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HRL5_PARL1
acyl-CoA dehydrogenase domain-containing protein
Acyl-CoA dehydrogenase domain protein {ECO:0000313|EMBL:ABS62548.1}; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
S13_scaffold_433_curated_13
Achromobacter piechaudii, Achromobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12096..12515
DNA (420bp) protein (140aa)
endoribonuclease L-PSP n=1 Tax=Comamonas sp. B-9 RepID=UPI000395542D
Endoribonuclease L-PSP {ECO:0000313|EMBL:EJO29559.1}; TaxID=1156919 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Achromobacter.;" source="Achromobacter piechaudii HLE.;"
endoribonuclease L-PSP
S13_scaffold_433_curated_14
Komagataeibacter xylinus, Komagataeibacter, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12512..13285
DNA (774bp) protein (258aa)
3-beta-hydroxysteroid dehydrogenase n=1 Tax=Gluconacetobacter oboediens RepID=UPI000237D888
Oxidoreductase/short-chain dehydrogenase/reductase SDR {ECO:0000313|EMBL:GAN99551.1}; TaxID=1234668 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Komagataeibacter.;" source="Komagataeibacter xylinus NBRC 13693.;"
short-chain dehydrogenase/reductase SDR
S13_scaffold_433_curated_15
Oceanibaculum indicum, Oceanibaculum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13346..14035)
DNA (690bp) protein (230aa)
Transcriptional regulator n=1 Tax=Oceanibaculum indicum P24 RepID=K2IXB5_9PROT
Transcriptional regulator {ECO:0000313|EMBL:EKE67282.1}; TaxID=1207063 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Oceanibaculum.;" source="Oceanibaculum indicum P24.;"
transcriptional regulatory protein
S13_scaffold_433_curated_16
Salipiger mucosus, Salipiger, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14182..15165)
DNA (984bp) protein (328aa)
TRAP-type C4-dicarboxylate transport system, periplasmic component n=1 Tax=Salipiger mucosus DSM 16094 RepID=S9QZV8_9RHOB
TRAP-type C4-dicarboxylate transport system, periplasmic component {ECO:0000313|EMBL:EPX85107.1}; TaxID=1123237 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Salipiger.;" source="Salipiger mucosus DSM 16094.;"
TRAP-type C4-dicarboxylate transport system, periplasmic component
S13_scaffold_433_curated_17
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15230..16519)
DNA (1290bp) protein (430aa)
TRAP-type C4-dicarboxylate transport system, large permease component n=1 Tax=Salipiger mucosus DSM 16094 RepID=S9QUT3_9RHOB rbh
TRAP dicarboxylate transporter, DctM subunit
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated
S13_scaffold_433_curated_18
Salipiger mucosus, Salipiger, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16554..17054)
DNA (501bp) protein (167aa)
TRAP C4-dicarboxylate transport system permease DctM subunit n=1 Tax=Salipiger mucosus DSM 16094 RepID=S9S4L2_9RHOB
TRAP C4-dicarboxylate transport system permease DctM subunit {ECO:0000313|EMBL:EPX85105.1}; TaxID=1123237 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Salipiger.;" source="Salipiger mucosus DSM 16094.;"
TRAP transporter small transmembrane protein
S13_scaffold_433_curated_19
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

17197..19272
DNA (2076bp) protein (692aa)
5-oxoprolinase (ATP-hydrolyzing) (EC:3.5.2.9) rbh
5-oxoprolinase (ATP-hydrolyzing) id=4849827 bin=GWC2_Methylomirabilis_70_16 species=unknown genus=Amycolatopsis taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10 rbh
Tax=GWC2_Rokubacteria_70_16_curated
S13_scaffold_433_curated_20
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

19287..21035
DNA (1749bp) protein (583aa)
5-oxoprolinase; K01474 N-methylhydantoinase B [EC:3.5.2.14] id=14627495 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10 rbh
5-oxoprolinase (EC:3.5.2.9) rbh
Tax=CSP1_6_Rokubacteria
S13_scaffold_433_curated_21
Oceanibaculum indicum, Oceanibaculum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21050..21988
DNA (939bp) protein (313aa)
Pyruvate dehydrogenase E1 component subunit alpha n=1 Tax=Oceanibaculum indicum P24 RepID=K2K1A0_9PROT rbh
Pyruvate dehydrogenase E1 component subunit alpha {ECO:0000313|EMBL:EKE76584.1}; TaxID=1207063 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Oceanibaculum.;" source="Oceanibaculum indicum P24.;"
2-oxo acid dehydrogenase subunit alpha rbh
S13_scaffold_433_curated_22
Oceanibaculum indicum, Oceanibaculum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21985..22968
DNA (984bp) protein (328aa)
Putative pyruvate dehydrogenase E1 beta subunit n=1 Tax=Oceanibaculum indicum P24 RepID=K2KH27_9PROT rbh
Putative pyruvate dehydrogenase E1 beta subunit {ECO:0000313|EMBL:EKE76585.1}; TaxID=1207063 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Oceanibaculum.;" source="Oceanibaculum indicum P24.;"
Pyruvate dehydrogenase E1 component subunit beta rbh
S13_scaffold_433_curated_23
Bordetella hinzii, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22978..23763
DNA (786bp) protein (262aa)
enoyl-CoA hydratase n=1 Tax=Variovorax paradoxus RepID=UPI00036C874A rbh
Putative 3-hydroxybutyryl-CoA dehydratase {ECO:0000313|EMBL:KCB42445.1}; TaxID=1331257 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella hinzii 5132.;"
putative enoyl-CoA hydratase rbh
S13_scaffold_433_curated_24
Bordetella bronchiseptica, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23767..25029
DNA (1263bp) protein (421aa)
Probable 2-oxo acid dehydrogenases acyltransferase n=1 Tax=Bordetella bronchiseptica 1289 RepID=K4U6A0_BORBO rbh
Probable 2-oxo acid dehydrogenases acyltransferase {ECO:0000313|EMBL:CCN25257.1}; TaxID=1208657 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella bronchiseptica 1289.;"
2-oxo acid dehydrogenase acyltransferase
S13_scaffold_433_curated_25
Ralstonia syzygii, Ralstonia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25023..26195
DNA (1173bp) protein (391aa)
Putative Acyl-CoA dehydrogenase {ECO:0000313|EMBL:CCA86463.1}; EC=1.3.99.3 {ECO:0000313|EMBL:CCA86463.1};; TaxID=907261 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Ralstonia.;" source="Ralstonia syzygii R24.;"
Putative Acyl-CoA dehydrogenase n=1 Tax=Ralstonia syzygii R24 RepID=G3A7I9_9RALS rbh
acyl-CoA dehydrogenase rbh
S13_scaffold_433_curated_26
RBG_16_Deltaproteobacteria_47_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26209..26961
DNA (753bp) protein (251aa)
hypothetical protein n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI0003609CBE
hypothetical protein
Tax=RBG_16_Deltaproteobacteria_47_11_curated
Displaying 26 items

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