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S13_scaffold_679_curated

Search features with annotation key words

Displaying 13 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
S13_scaffold_679_curated_1
Agrobacterium rubi, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1..1335
DNA (1335bp) protein (445aa)
hypothetical protein n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI0003816CCC rbh
Succinate-semialdehyde dehydrogenase {ECO:0000313|EMBL:GAK72988.1}; TaxID=1220582 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Rhizobium rubi NBRC 13261.;"
gabD; succinate-semialdehyde dehydrogenase rbh
S13_scaffold_679_curated_2
Pseudomonas sp. M1, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(1565..2182)
DNA (618bp) protein (206aa)
Uncharacterized protein n=1 Tax=Pseudomonas aeruginosa WC55 RepID=T5L079_PSEAI
Threonine transporter {ECO:0000313|EMBL:ETM66019.1}; TaxID=95619 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. (strain M1).;"
threonine transporter
S13_scaffold_679_curated_3
Sulfitobacter mediterraneus, Sulfitobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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2279..3538
DNA (1260bp) protein (420aa)
Integral membrane protein n=1 Tax=Pseudovibrio sp. (strain FO-BEG1) RepID=G8PIA6_PSEUV rbh
Membrane protein {ECO:0000313|EMBL:KAJ03377.1}; TaxID=83219 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Sulfitobacter.;" source="Sulfitobacter mediterraneus.;"
integral membrane protein rbh
S13_scaffold_679_curated_4
Tistrella mobilis, Tistrella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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3650..4258
DNA (609bp) protein (203aa)
Transcriptional regulator, TetR family protein n=1 Tax=Tistrella mobilis (strain KA081020-065) RepID=I3TJY6_TISMK rbh
yjdC; TetR family transcriptional regulator rbh
Transcriptional regulator, TetR family protein {ECO:0000313|EMBL:AFK53074.1}; TaxID=1110502 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Tistrella.;" source="Tistrella mobilis (strain KA081020-065).;"
S13_scaffold_679_curated_5
Tistrella mobilis, Tistrella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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4343..5563
DNA (1221bp) protein (407aa)
Major facilitator superfamily MFS_1 n=1 Tax=Tistrella mobilis (strain KA081020-065) RepID=I3TJY5_TISMK rbh
ybfB; major facilitator superfamily protein rbh
Major facilitator superfamily MFS_1 {ECO:0000313|EMBL:AFK53073.1}; TaxID=1110502 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Tistrella.;" source="Tistrella mobilis (strain KA081020-065).;"
S13_scaffold_679_curated_6
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

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comp(5804..6175)
DNA (372bp) protein (124aa)
Uncharacterized protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XBK2_9BACT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EEF62887.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
S13_scaffold_679_curated_trna_1
unknown

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comp(6267..6340)
DNA (74bp)
transferRNA Arg
S13_scaffold_679_curated_7
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(6497..7744)
DNA (1248bp) protein (416aa)
Lytic murein transglycosylase n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HJQ2_9RHIZ rbh
Lytic murein transglycosylase {ECO:0000313|EMBL:EHK59112.1}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
lytic murein transglycosylase rbh
S13_scaffold_679_curated_8
Aquamicrobium defluvii, Aquamicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7770..8375)
DNA (606bp) protein (202aa)
Recombination protein RecR n=1 Tax=Nitratireductor indicus C115 RepID=K2NYG7_9RHIZ rbh
Recombination protein RecR {ECO:0000256|HAMAP-Rule:MF_00017, ECO:0000256|SAAS:SAAS00012243}; TaxID=69279 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Aquamicrobium.;" source="Aquamicrobium defluvii.;"
recombination protein RecR rbh
S13_scaffold_679_curated_9
unknown

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comp(8479..8613)
DNA (135bp) protein (45aa)

This feature has no annotations

S13_scaffold_679_curated_10
Microvirga lotononidis, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(8699..9778)
DNA (1080bp) protein (360aa)
Putative oxidoreductase, LLM family n=1 Tax=Microvirga sp. WSM3557 RepID=I4Z2A1_9RHIZ rbh
Putative oxidoreductase, LLM family {ECO:0000313|EMBL:EIM30343.1}; TaxID=864069 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga lotononidis.;"
luciferase-like protein rbh
S13_scaffold_679_curated_11
Rhodovulum sp. PH10, Rhodovulum, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10725..12506
DNA (1782bp) protein (594aa)
Uncharacterized protein n=1 Tax=Rhodovulum sp. PH10 RepID=J6JEW7_9RHOB rbh
Uncharacterized protein {ECO:0000313|EMBL:EJW13395.1}; TaxID=1187851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodovulum.;" source="Rhodovulum sp. PH10.;"
diguanylate cyclase rbh
S13_scaffold_679_curated_12
Mesorhizobium sp. LNHC220B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(12574..13698)
DNA (1125bp) protein (375aa)
UPI0003CF6B6D related cluster n=1 Tax=unknown RepID=UPI0003CF6B6D rbh
DNA recombinase {ECO:0000313|EMBL:ESY87571.1}; TaxID=1287232 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC220B00.;"
hypothetical protein rbh
Displaying 13 items

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