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S13_scaffold_307_curated

Search features with annotation key words

Displaying items 1-30 of 41 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
S13_scaffold_307_curated_1
GWF2_Firmicutes_51_9_curated, Firmicutes, Bacteria

Not on your lists

comp(1..843)
DNA (843bp) protein (281aa)
glucokinase (EC:2.7.1.2)
ROK family protein id=2151432 bin=GWE2_Firmicute_51_13 species=Clostridium saccharoperbutylacetonicum genus=Clostridium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWE2_Firmicute_51_13 organism_group=Firmicute organism_desc=Good +
Tax=GWF2_Firmicutes_51_9_curated
S13_scaffold_307_curated_2
Alistipes sp. CAG:514, Alistipes, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(821..2116)
DNA (1296bp) protein (432aa)
Putative ATP/GTP-binding protein n=1 Tax=Alistipes sp. CAG:514 RepID=R5BMM5_9BACT
Putative ATP/GTP-binding protein {ECO:0000313|EMBL:CCX52716.1}; TaxID=1262696 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Rikenellaceae; Alistipes; environmental samples.;" source="Alistipes sp. CAG:514.;"
putative ATP/GTP-binding protein
S13_scaffold_307_curated_3
Clostridium sp. 7_2_43FAA, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2201..2716)
DNA (516bp) protein (172aa)
Uncharacterized protein n=1 Tax=Clostridium sp. 7_2_43FAA RepID=V9H8V7_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EEH99377.1}; TaxID=457396 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. 7_2_43FAA.;"
peptidylprolyl isomerase
S13_scaffold_307_curated_4
GWF2_Firmicutes_51_9_curated, Firmicutes, Bacteria

Not on your lists

2794..3816
DNA (1023bp) protein (341aa)
Putative uncharacterized protein id=3619322 bin=GWF2_Firmicute_51_9 species=Holdemania filiformis genus=Holdemania taxon_order=Erysipelotrichales taxon_class=Erysipelotrichia phylum=Firmicutes tax=GWF2_Firmicute_51_9 organism_group=Firmicute rbh
hypothetical protein
Tax=GWF2_Firmicutes_51_9_curated
S13_scaffold_307_curated_5
Eubacterium dolichum CAG:375, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3837..4880)
DNA (1044bp) protein (348aa)
Putative uncharacterized protein id=2189237 bin=GWE2_Firmicute_51_13 species=Holdemania filiformis genus=Holdemania taxon_order=Erysipelotrichales taxon_class=Erysipelotrichia phylum=Firmicutes tax=GWE2_Firmicute_51_13 organism_group=Firmicute organism_desc=Good + rbh
Peptide chain release factor 2 {ECO:0000256|HAMAP-Rule:MF_00094, ECO:0000256|SAAS:SAAS00020438}; Short=RF-2 {ECO:0000256|HAMAP-Rule:MF_00094};; TaxID=1263076 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium dolichum CAG:375.;"
peptide chain release factor 2 rbh
S13_scaffold_307_curated_6
GWF2_Firmicutes_51_9_curated, Firmicutes, Bacteria

Not on your lists

comp(4938..6530)
DNA (1593bp) protein (531aa)
Protein translocase subunit SecA id=2189216 bin=GWE2_Firmicute_51_13 species=Holdemania filiformis genus=Holdemania taxon_order=Erysipelotrichales taxon_class=Erysipelotrichia phylum=Firmicutes tax=GWE2_Firmicute_51_13 organism_group=Firmicute organism_desc=Good + rbh
secA; preprotein translocase subunit SecA rbh
Tax=GWF2_Firmicutes_51_9_curated
S13_scaffold_307_curated_7
GWF2_Firmicutes_51_9_curated, Firmicutes, Bacteria

Not on your lists

comp(7372..7569)
DNA (198bp) protein (66aa)
Putative uncharacterized protein id=2108112 bin=GWE2_Firmicute_51_13 species=Holdemania filiformis genus=Holdemania taxon_order=Erysipelotrichales taxon_class=Erysipelotrichia phylum=Firmicutes tax=GWE2_Firmicute_51_13 organism_group=Firmicute organism_desc=Good +
cold-shock DNA-binding domain-containing protein
Tax=GWF2_Firmicutes_51_9_curated
S13_scaffold_307_curated_8
GWF2_Firmicutes_51_9_curated, Firmicutes, Bacteria

Not on your lists

comp(7690..8157)
DNA (468bp) protein (156aa)
ComF family protein id=2189214 bin=GWE2_Firmicute_51_13 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Firmicutes tax=GWE2_Firmicute_51_13 organism_group=Firmicute organism_desc=Good +
Tax=GWF2_Firmicutes_51_9_curated
S13_scaffold_307_curated_9
GWF2_Firmicutes_51_9_curated, Firmicutes, Bacteria

Not on your lists

comp(8259..9380)
DNA (1122bp) protein (374aa)
Putative uncharacterized protein id=2189213 bin=GWE2_Firmicute_51_13 species=Solobacterium moorei genus=Solobacterium taxon_order=Erysipelotrichales taxon_class=Erysipelotrichia phylum=Firmicutes tax=GWE2_Firmicute_51_13 organism_group=Firmicute organism_desc=Good + rbh
Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein)
Tax=GWF2_Firmicutes_51_9_curated
S13_scaffold_307_curated_10
Holdemania filiformis, Holdemania, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

9478..9798
DNA (321bp) protein (107aa)
Transcriptional regulator, PadR family n=1 Tax=Holdemania filiformis DSM 12042 RepID=B9Y6Z7_9FIRM
Transcriptional regulator, PadR family {ECO:0000313|EMBL:EEF68240.1}; TaxID=545696 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemania.;" source="Holdemania filiformis DSM 12042.;"
PadR-like family transcriptional regulator
S13_scaffold_307_curated_11
GWF2_Firmicutes_51_9_curated, Firmicutes, Bacteria

Not on your lists

9791..10831
DNA (1041bp) protein (347aa)
Putative uncharacterized protein id=1855869 bin=GWE2_Firmicute_51_13 species=Holdemania filiformis genus=Holdemania taxon_order=Erysipelotrichales taxon_class=Erysipelotrichia phylum=Firmicutes tax=GWE2_Firmicute_51_13 organism_group=Firmicute organism_desc=Good +
hypothetical protein
Tax=GWF2_Firmicutes_51_9_curated
S13_scaffold_307_curated_12
GWF2_Firmicutes_51_9_curated, Firmicutes, Bacteria

Not on your lists

comp(10857..11414)
DNA (558bp) protein (186aa)
Putative uncharacterized protein id=2189209 bin=GWE2_Firmicute_51_13 species=Erysipelothrix rhusiopathiae genus=Erysipelothrix taxon_order=Erysipelotrichales taxon_class=Erysipelotrichia phylum=Firmicutes tax=GWE2_Firmicute_51_13 organism_group=Firmicute organism_desc=Good +
putative phosphoserine phosphatase
Tax=GWF2_Firmicutes_51_9_curated
S13_scaffold_307_curated_13
Clostridium sp. CAG:265, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11414..12514)
DNA (1101bp) protein (367aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1262787 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:265.;"
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein n=2 Tax=environmental samples RepID=R6FQF9_9CLOT
integral membrane sensor signal transduction histidine kinase
S13_scaffold_307_curated_14
GWF2_Firmicutes_51_9_curated, Firmicutes, Bacteria

Not on your lists

comp(12516..13187)
DNA (672bp) protein (224aa)
Transcriptional regulatory protein CutR id=2189206 bin=GWE2_Firmicute_51_13 species=unknown genus=Turicibacter taxon_order=Erysipelotrichales taxon_class=Erysipelotrichia phylum=Firmicutes tax=GWE2_Firmicute_51_13 organism_group=Firmicute organism_desc=Good +
cutR; transcriptional regulatory protein cutR
Tax=GWF2_Firmicutes_51_9_curated
S13_scaffold_307_curated_15
unknown

Not on your lists

comp(13184..13303)
DNA (120bp) protein (40aa)

This feature has no annotations

S13_scaffold_307_curated_16
Onion yellows phytoplasma, Candidatus Phytoplasma, Acholeplasmatales, Mollicutes, Tenericutes, Bacteria

Not on your lists

comp(13393..14184)
DNA (792bp) protein (264aa)
Putative ABC transporter ATP-binding protein PAM_020; EC=3.6.3.-;; TaxID=262768 species="Bacteria; Tenericutes; Mollicutes; Acholeplasmatales; Acholeplasmataceae; Candidatus Phytoplasma; Candidatus Phytoplasma asteris.;" source="Onion yellows phytoplasma (strain OY-M).;"
Putative ABC transporter ATP-binding protein PAM_020 n=1 Tax=Onion yellows phytoplasma (strain OY-M) RepID=Y020_ONYPE
peptide ABC transporter ATPase
S13_scaffold_307_curated_17
GWF2_Firmicutes_51_9_curated, Firmicutes, Bacteria

Not on your lists

comp(14291..16180)
DNA (1890bp) protein (630aa)
Chaperone protein HtpG id=2189204 bin=GWE2_Firmicute_51_13 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Firmicutes tax=GWE2_Firmicute_51_13 organism_group=Firmicute organism_desc=Good + rbh
Molecular chaperone, HSP90 family rbh
Tax=GWF2_Firmicutes_51_9_curated
S13_scaffold_307_curated_18
GWF2_Firmicutes_51_9_curated, Firmicutes, Bacteria

Not on your lists

16493..18124
DNA (1632bp) protein (544aa)
cshA; DEAD-box ATP-dependent RNA helicase CshA (EC:3.6.4.13) rbh
Putative uncharacterized protein id=2189201 bin=GWE2_Firmicute_51_13 species=Holdemania filiformis genus=Holdemania taxon_order=Erysipelotrichales taxon_class=Erysipelotrichia phylum=Firmicutes tax=GWE2_Firmicute_51_13 organism_group=Firmicute organism_desc=Good + rbh
Tax=GWF2_Firmicutes_51_9_curated
S13_scaffold_307_curated_19
unknown

Not on your lists

comp(18152..18796)
DNA (645bp) protein (215aa)

This feature has no annotations

S13_scaffold_307_curated_20
unknown

Not on your lists

comp(18827..19087)
DNA (261bp) protein (87aa)

This feature has no annotations

S13_scaffold_307_curated_21
Enterococcus casseliflavus, Enterococcus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(19099..19797)
DNA (699bp) protein (233aa)
Uncharacterized protein n=1 Tax=Enterococcus casseliflavus 14-MB-W-14 RepID=S4B052_ENTCA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EPH64930.1}; TaxID=1259825 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Enterococcaceae; Enterococcus.;" source="Enterococcus casseliflavus 14-MB-W-14.;"
S13_scaffold_307_curated_22
GWF2_Firmicutes_51_9_curated, Firmicutes, Bacteria

Not on your lists

comp(19811..20662)
DNA (852bp) protein (284aa)
EDD domain protein, DegV family id=3962503 bin=GWF2_Firmicute_51_9 species=[Eubacterium] dolichum genus=unknown taxon_order=Erysipelotrichales taxon_class=Erysipelotrichia phylum=Firmicutes tax=GWF2_Firmicute_51_9 organism_group=Firmicute
DegV family protein
Tax=GWF2_Firmicutes_51_9_curated
S13_scaffold_307_curated_23
GWF2_Firmicutes_51_9_curated, Firmicutes, Bacteria

Not on your lists

comp(20716..21570)
DNA (855bp) protein (285aa)
DegV family protein id=2189193 bin=GWE2_Firmicute_51_13 species=Erysipelothrix rhusiopathiae genus=Erysipelothrix taxon_order=Erysipelotrichales taxon_class=Erysipelotrichia phylum=Firmicutes tax=GWE2_Firmicute_51_13 organism_group=Firmicute organism_desc=Good +
DegV family protein
Tax=GWF2_Firmicutes_51_9_curated
S13_scaffold_307_curated_24
[Clostridium] termitidis, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21685..22074
DNA (390bp) protein (130aa)
Putative CoA-binding protein n=1 Tax=Clostridium termitidis CT1112 RepID=S0FII4_9CLOT
Putative CoA-binding protein {ECO:0000313|EMBL:EMS71790.1}; TaxID=1195236 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] termitidis CT1112.;"
CoA-binding domain-containing protein
S13_scaffold_307_curated_25
Clostridium pasteurianum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22181..23560
DNA (1380bp) protein (460aa)
6-phospho-beta-glucosidase n=1 Tax=Clostridium pasteurianum NRRL B-598 RepID=V8FRP3_CLOPA rbh
6-phospho-beta-glucosidase {ECO:0000313|EMBL:ETD66536.1}; TaxID=1428454 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium pasteurianum NRRL B-598.;"
glycoside hydrolase rbh
S13_scaffold_307_curated_26
Desulfitobacterium metallireducens, Desulfitobacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23602..24072
DNA (471bp) protein (157aa)
GCN5-related N-acetyltransferase n=1 Tax=Desulfitobacterium metallireducens DSM 15288 RepID=G6GJD0_9FIRM
GNAT family acetyltransferase
GNAT family acetyltransferase {ECO:0000313|EMBL:AHF07121.1}; TaxID=871968 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae; Desulfitobacterium.;" source="Desulfitobacterium metallireducens DSM 15288.;"
S13_scaffold_307_curated_27
Clostridium sulfidigenes, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24160..25167
DNA (1008bp) protein (336aa)
Iron compound ABC transporter, iron compound-binding protein n=1 Tax=Clostridium perfringens NCTC 8239 RepID=B1RNV1_CLOPF rbh
Iron deficiency-induced protein A {ECO:0000313|EMBL:KEZ87332.1}; TaxID=318464 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sulfidigenes.;"
ion-uptake ABC transporter rbh
S13_scaffold_307_curated_28
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25167..26750
DNA (1584bp) protein (528aa)
Putative iron ABC transporter, permease protein n=1 Tax=Clostridium perfringens C str. JGS1495 RepID=B1BGQ7_CLOPF rbh
Putative iron ABC transporter, permease protein {ECO:0000313|EMBL:EDS80994.1}; TaxID=445334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens C str. JGS1495.;"
iron ABC transporter permease rbh
S13_scaffold_307_curated_29
Paenisporosarcina sp. HGH0030, Paenisporosarcina, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

26750..27373
DNA (624bp) protein (208aa)
Uncharacterized protein n=1 Tax=Paenisporosarcina sp. HGH0030 RepID=S2XQC1_9BACL
Uncharacterized protein {ECO:0000313|EMBL:EPD54206.1}; TaxID=1078085 species="Bacteria; Firmicutes; Bacilli; Bacillales; Planococcaceae; Paenisporosarcina.;" source="Paenisporosarcina sp. HGH0030.;"
ABC transporter
S13_scaffold_307_curated_30
Alkaliphilus metalliredigens, Alkaliphilus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27460..28371)
DNA (912bp) protein (304aa)
N-acetylmuramic acid 6-phosphate etherase {ECO:0000255|HAMAP-Rule:MF_00068}; Short=MurNAc-6-P etherase {ECO:0000255|HAMAP-Rule:MF_00068};; EC=4.2.1.126 {ECO:0000255|HAMAP-Rule:MF_00068};; N-acetylmuramic acid 6-phosphate hydrolase {ECO:0000255|HAMAP-Rule:MF_00068}; N-acetylmuramic acid 6-phosphate lyase {ECO:0000255|HAMAP-Rule:MF_00068}; TaxID=293826 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Alkaliphilus.;" source="Alkaliphilus metalliredigens (strain QYMF).;"
N-acetylmuramic acid 6-phosphate etherase n=1 Tax=Alkaliphilus metalliredigens (strain QYMF) RepID=MURQ_ALKMQ rbh
RpiR family transcriptional regulator rbh
Displaying items 1-30 of 41 in total

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