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S13_scaffold_841_curated

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Displaying 13 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
S13_scaffold_841_curated_1
GWF2_Firmicutes_51_9_curated, Firmicutes, Bacteria

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2..247
DNA (246bp) protein (82aa)
Putative uncharacterized protein id=2133852 bin=GWE2_Firmicute_51_13 species=Holdemania filiformis genus=Holdemania taxon_order=Erysipelotrichales taxon_class=Erysipelotrichia phylum=Firmicutes tax=GWE2_Firmicute_51_13 organism_group=Firmicute organism_desc=Good +
iscS; cysteine desulfurase
Tax=GWF2_Firmicutes_51_9_curated
S13_scaffold_841_curated_2
Firmicutes bacterium M10-2, Firmicutes, Bacteria

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234..1421
DNA (1188bp) protein (396aa)
Probable tRNA sulfurtransferase {ECO:0000256|HAMAP-Rule:MF_00021, ECO:0000256|SAAS:SAAS00094284}; EC=2.8.1.4 {ECO:0000256|HAMAP-Rule:MF_00021, ECO:0000256|SAAS:SAAS00094270};; Sulfur carrier protein ThiS sulfurtransferase {ECO:0000256|HAMAP-Rule:MF_00021}; Thiamine biosynthesis protein ThiI {ECO:0000256|HAMAP-Rule:MF_00021}; tRNA 4-thiouridine synthase {ECO:0000256|HAMAP-Rule:MF_00021}; TaxID=1235796 species="Bacteria; Firmicutes.;" source="Firmicutes bacterium M10-2.;"
Probable tRNA sulfurtransferase id=2133849 bin=GWE2_Firmicute_51_13 species=Holdemania filiformis genus=Holdemania taxon_order=Erysipelotrichales taxon_class=Erysipelotrichia phylum=Firmicutes tax=GWE2_Firmicute_51_13 organism_group=Firmicute organism_desc=Good + rbh
thiazole biosynthesis/tRNA modification protein ThiI rbh
S13_scaffold_841_curated_3
GWF2_Firmicutes_51_9_curated, Firmicutes, Bacteria

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1430..2755
DNA (1326bp) protein (442aa)
Signal recognition particle protein id=4675923 bin=GWF2_Firmicute_51_9 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Firmicutes tax=GWF2_Firmicute_51_9 organism_group=Firmicute rbh
ffh; signal recognition particle protein SRP54 rbh
Tax=GWF2_Firmicutes_51_9_curated
S13_scaffold_841_curated_4
Carnobacterium sp. WN1359, Carnobacterium, Lactobacillales, Bacilli, Firmicutes, Bacteria

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2835..3107
DNA (273bp) protein (91aa)
30S ribosomal protein S16 n=1 Tax=Carnobacterium sp. WN1359 RepID=U5S8I9_9LACT
rpsP; 30S ribosomal protein S16
30S ribosomal protein S16 {ECO:0000256|HAMAP-Rule:MF_00385}; TaxID=1266845 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Carnobacteriaceae; Carnobacterium.;" source="Carnobacterium sp. WN1359.;"
S13_scaffold_841_curated_5
Chlamydia trachomatis, Chlamydia, Chlamydiales, Chlamydiia, Chlamydiae, Bacteria

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3110..3355
DNA (246bp) protein (82aa)
RNA-binding protein (KH domain) n=1 Tax=Firmicutes bacterium CAG:536 RepID=R6A0B1_9FIRM
Predicted RNA-binding protein (Contains KH domain) {ECO:0000313|EMBL:CRH84865.1}; TaxID=813 species="Bacteria; Chlamydiae; Chlamydiales; Chlamydiaceae; Chlamydia/Chlamydophila group; Chlamydia.;" source="Chlamydia trachomatis.;"
RNA-binding protein (KH domain)
S13_scaffold_841_curated_6
GWF2_Firmicutes_51_9_curated, Firmicutes, Bacteria

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3382..3879
DNA (498bp) protein (166aa)
16S rRNA-processing protein RimM id=2133834 bin=GWE2_Firmicute_51_13 species=Enterococcus gilvus genus=Enterococcus taxon_order=Lactobacillales taxon_class=Bacilli phylum=Firmicutes tax=GWE2_Firmicute_51_13 organism_group=Firmicute organism_desc=Good +
16S rRNA-processing protein RimM
Tax=GWF2_Firmicutes_51_9_curated
S13_scaffold_841_curated_7
Holdemania filiformis, Holdemania, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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3876..4607
DNA (732bp) protein (244aa)
tRNA (guanine-N(1)-)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00605, ECO:0000256|RuleBase:RU003464}; EC=2.1.1.228 {ECO:0000256|HAMAP-Rule:MF_00605, ECO:0000256|RuleBase:RU003464};; M1G-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00605}; tRNA [GM37] methyltransferase {ECO:0000256|HAMAP-Rule:MF_00605}; TaxID=545696 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemania.;" source="Holdemania filiformis DSM 12042.;"
tRNA (guanine-N(1)-)-methyltransferase n=1 Tax=Holdemania filiformis DSM 12042 RepID=B9YD26_9FIRM rbh
trmD; tRNA (guanine-N(1)-)-methyltransferase
S13_scaffold_841_curated_8
GWF2_Firmicutes_51_9_curated, Firmicutes, Bacteria

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4725..5072
DNA (348bp) protein (116aa)
50S ribosomal protein L19 id=4675918 bin=GWF2_Firmicute_51_9 species=Holdemania filiformis genus=Holdemania taxon_order=Erysipelotrichales taxon_class=Erysipelotrichia phylum=Firmicutes tax=GWF2_Firmicute_51_9 organism_group=Firmicute
50S ribosomal protein L19
Tax=GWF2_Firmicutes_51_9_curated
S13_scaffold_841_curated_9
GWF2_Firmicutes_51_9_curated, Firmicutes, Bacteria

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5106..5648
DNA (543bp) protein (181aa)
Signal peptidase IB id=4675917 bin=GWF2_Firmicute_51_9 species=Erysipelothrix rhusiopathiae genus=Erysipelothrix taxon_order=Erysipelotrichales taxon_class=Erysipelotrichia phylum=Firmicutes tax=GWF2_Firmicute_51_9 organism_group=Firmicute
signal peptidase I
Tax=GWF2_Firmicutes_51_9_curated
S13_scaffold_841_curated_10
GWF2_Firmicutes_51_9_curated, Firmicutes, Bacteria

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5832..6494
DNA (663bp) protein (221aa)
Ribosome biogenesis GTPase A id=2133822 bin=GWE2_Firmicute_51_13 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Firmicutes tax=GWE2_Firmicute_51_13 organism_group=Firmicute organism_desc=Good +
GTPase
Tax=GWF2_Firmicutes_51_9_curated
S13_scaffold_841_curated_11
GWF2_Firmicutes_51_9_curated, Firmicutes, Bacteria

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6475..7083
DNA (609bp) protein (203aa)
RNase HII (EC:3.1.26.4)
Ribonuclease HII id=2133820 bin=GWE2_Firmicute_51_13 species=Solobacterium moorei genus=Solobacterium taxon_order=Erysipelotrichales taxon_class=Erysipelotrichia phylum=Firmicutes tax=GWE2_Firmicute_51_13 organism_group=Firmicute organism_desc=Good +
Tax=GWF2_Firmicutes_51_9_curated
S13_scaffold_841_curated_12
[Eubacterium] dolichum, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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7119..7847
DNA (729bp) protein (243aa)
DNA protecting protein DprA n=1 Tax=Eubacterium dolichum DSM 3991 RepID=A8RBU6_9FIRM
DNA protecting protein DprA {ECO:0000313|EMBL:EDP11266.1}; TaxID=428127 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae.;" source="[Eubacterium] dolichum DSM 3991.;"
Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake
S13_scaffold_841_curated_13
GWF2_Firmicutes_51_9_curated, Firmicutes, Bacteria

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8122..9765
DNA (1644bp) protein (548aa)
DNA topoisomerase id=2133816 bin=GWE2_Firmicute_51_13 species=Holdemania filiformis genus=Holdemania taxon_order=Erysipelotrichales taxon_class=Erysipelotrichia phylum=Firmicutes tax=GWE2_Firmicute_51_13 organism_group=Firmicute organism_desc=Good + rbh
topA; DNA topoisomerase I rbh
Tax=GWF2_Firmicutes_51_9_curated
Displaying 13 items

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