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S13_scaffold_503_curated

Search features with annotation key words

Displaying 20 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
S13_scaffold_503_curated_1
GWF2_Firmicutes_51_9_curated, Firmicutes, Bacteria

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comp(45..635)
DNA (591bp) protein (197aa)
TetR/AcrR family transcriptional regulator id=4051894 bin=GWF2_Firmicute_51_9 species=Haloplasma contractile genus=Haloplasma taxon_order=Haloplasmatales taxon_class=unknown phylum=unknown tax=GWF2_Firmicute_51_9 organism_group=Firmicute
fadR; Fatty acid metabolism regulator protein
Tax=GWF2_Firmicutes_51_9_curated
S13_scaffold_503_curated_2
GWF2_Firmicutes_51_9_curated, Firmicutes, Bacteria

Not on your lists

comp(1522..2829)
DNA (1308bp) protein (436aa)
ach1; acetyl-CoA hydrolase (EC:3.1.2.1) rbh
Acetyl-CoA hydrolase id=2108449 bin=GWE2_Firmicute_51_13 species=Haloplasma contractile genus=Haloplasma taxon_order=Haloplasmatales taxon_class=unknown phylum=unknown tax=GWE2_Firmicute_51_13 organism_group=Firmicute organism_desc=Good + rbh
Tax=GWF2_Firmicutes_51_9_curated
S13_scaffold_503_curated_3
GWF2_Firmicutes_51_9_curated, Firmicutes, Bacteria

Not on your lists

comp(2890..4113)
DNA (1224bp) protein (408aa)
ABC transporter ligand-binding protein id=2108447 bin=GWE2_Firmicute_51_13 species=Haloplasma contractile genus=Haloplasma taxon_order=Haloplasmatales taxon_class=unknown phylum=unknown tax=GWE2_Firmicute_51_13 organism_group=Firmicute organism_desc=Good + rbh
Branched-chain amino acid ABC transporter, amino acid-binding protein
Tax=GWF2_Firmicutes_51_9_curated
S13_scaffold_503_curated_4
Clostridiales bacterium oral taxon 876, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4155..4874)
DNA (720bp) protein (240aa)
ABC transporter, ATP-binding protein n=1 Tax=Clostridiales bacterium oral taxon 876 str. F0540 RepID=U2CGT6_9FIRM rbh
ABC transporter, ATP-binding protein {ECO:0000313|EMBL:ERI89704.1}; TaxID=1321778 species="Bacteria; Firmicutes; Clostridia; Clostridiales.;" source="Clostridiales bacterium oral taxon 876 str. F0540.;"
livF; High-affinity branched-chain amino acid transport ATP-binding protein LivF
S13_scaffold_503_curated_5
Clostridiales bacterium oral taxon 876, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4867..5670)
DNA (804bp) protein (268aa)
lptB; Lipopolysaccharide export system ATP-binding protein LptB (EC:3.6.3.-)
ABC transporter, ATP-binding protein n=1 Tax=Clostridiales bacterium oral taxon 876 str. F0540 RepID=U2CYT5_9FIRM rbh
ABC transporter, ATP-binding protein {ECO:0000313|EMBL:ERI89705.1}; TaxID=1321778 species="Bacteria; Firmicutes; Clostridia; Clostridiales.;" source="Clostridiales bacterium oral taxon 876 str. F0540.;"
S13_scaffold_503_curated_6
Clostridiales bacterium oral taxon 876, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5660..6691)
DNA (1032bp) protein (344aa)
Branched-chain amino acid ABC transporter, permease protein n=1 Tax=Clostridiales bacterium oral taxon 876 str. F0540 RepID=U2EAR7_9FIRM rbh
Branched-chain amino acid ABC transporter, permease protein {ECO:0000313|EMBL:ERI89706.1}; TaxID=1321778 species="Bacteria; Firmicutes; Clostridia; Clostridiales.;" source="Clostridiales bacterium oral taxon 876 str. F0540.;"
leucine/isoleucine/valine transporter permease subunit
S13_scaffold_503_curated_7
GWF2_Firmicutes_51_9_curated, Firmicutes, Bacteria

Not on your lists

comp(6699..7574)
DNA (876bp) protein (292aa)
Inner-membrane translocator id=2108439 bin=GWE2_Firmicute_51_13 species=Haloplasma contractile genus=Haloplasma taxon_order=Haloplasmatales taxon_class=unknown phylum=unknown tax=GWE2_Firmicute_51_13 organism_group=Firmicute organism_desc=Good + rbh
livH; High-affinity branched-chain amino acid transport system permease protein LivH
Tax=GWF2_Firmicutes_51_9_curated
S13_scaffold_503_curated_8
GWF2_Firmicutes_51_9_curated, Firmicutes, Bacteria

Not on your lists

comp(7571..8593)
DNA (1023bp) protein (341aa)
3-oxoacyl-[acyl-carrier-protein] synthase III id=4051853 bin=GWF2_Firmicute_51_9 species=Acholeplasma laidlawii genus=Acholeplasma taxon_order=Acholeplasmatales taxon_class=Mollicutes phylum=Tenericutes tax=GWF2_Firmicute_51_9 organism_group=Firmicute rbh
fabH2; hypothetical protein rbh
Tax=GWF2_Firmicutes_51_9_curated
S13_scaffold_503_curated_9
GWF2_Firmicutes_51_9_curated, Firmicutes, Bacteria

Not on your lists

comp(8593..9399)
DNA (807bp) protein (269aa)
Alpha/beta hydrolase fold protein id=2108437 bin=GWE2_Firmicute_51_13 species=Haloplasma contractile genus=Haloplasma taxon_order=Haloplasmatales taxon_class=unknown phylum=unknown tax=GWE2_Firmicute_51_13 organism_group=Firmicute organism_desc=Good + rbh
alpha/beta hydrolase
Tax=GWF2_Firmicutes_51_9_curated
S13_scaffold_503_curated_10
GWF2_Firmicutes_51_9_curated, Firmicutes, Bacteria

Not on your lists

comp(10205..11422)
DNA (1218bp) protein (406aa)
Acetyl-CoA acetyltransferase id=2108435 bin=GWE2_Firmicute_51_13 species=unknown genus=Fusobacterium taxon_order=Fusobacteriales taxon_class=Fusobacteriia phylum=Fusobacteria tax=GWE2_Firmicute_51_13 organism_group=Firmicute organism_desc=Good + rbh
acetyl-CoA C-acetyltransferase
Tax=GWF2_Firmicutes_51_9_curated
S13_scaffold_503_curated_11
GWF2_Firmicutes_51_9_curated, Firmicutes, Bacteria

Not on your lists

comp(11647..12780)
DNA (1134bp) protein (378aa)
Mannitol-1-phosphate 5-dehydrogenase id=4051835 bin=GWF2_Firmicute_51_9 species=Haloplasma contractile genus=Haloplasma taxon_order=Haloplasmatales taxon_class=unknown phylum=unknown tax=GWF2_Firmicute_51_9 organism_group=Firmicute rbh
mannitol-1-phosphate 5-dehydrogenase
Tax=GWF2_Firmicutes_51_9_curated
S13_scaffold_503_curated_12
GWF2_Firmicutes_51_9_curated, Firmicutes, Bacteria

Not on your lists

comp(12777..13508)
DNA (732bp) protein (244aa)
PTS system, Lactose/Cellobiose specific IIB subunit id=2108386 bin=GWE2_Firmicute_51_13 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Firmicutes tax=GWE2_Firmicute_51_13 organism_group=Firmicute organism_desc=Good +
PTS system mannitol-specific transporter subunit IIC
Tax=GWF2_Firmicutes_51_9_curated
S13_scaffold_503_curated_13
GWF2_Firmicutes_51_9_curated, Firmicutes, Bacteria

Not on your lists

comp(13484..15610)
DNA (2127bp) protein (709aa)
transcriptional antiterminator BglG (EC:2.7.1.69) rbh
Putative PRD domain protein id=2108381 bin=GWE2_Firmicute_51_13 species=Clostridium sp. ASF502 genus=Clostridium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWE2_Firmicute_51_13 organism_group=Firmicute organism_desc=Good + rbh
Tax=GWF2_Firmicutes_51_9_curated
S13_scaffold_503_curated_14
GWF2_Firmicutes_51_9_curated, Firmicutes, Bacteria

Not on your lists

comp(15717..15995)
DNA (279bp) protein (93aa)
PTS system, mannitol-specific IIC subunit (EC:2.7.1.69)
PTS system, mannitol-specific IIC component id=4051829 bin=GWF2_Firmicute_51_9 species=unknown genus=Brevibacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWF2_Firmicute_51_9 organism_group=Firmicute
Tax=GWF2_Firmicutes_51_9_curated
S13_scaffold_503_curated_15
GWF2_Firmicutes_51_9_curated, Firmicutes, Bacteria

Not on your lists

comp(15992..17047)
DNA (1056bp) protein (352aa)
PTS system, mannitol-specific IIC component id=4051829 bin=GWF2_Firmicute_51_9 species=unknown genus=Brevibacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWF2_Firmicute_51_9 organism_group=Firmicute rbh
PTS system D-mannitol-specific transsporter subunit IIABC rbh
Tax=GWF2_Firmicutes_51_9_curated
S13_scaffold_503_curated_16
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(17222..17770)
DNA (549bp) protein (183aa)
Zinc finger, SWIM domain protein n=1 Tax=Bifidobacterium longum subsp. infantis (strain ATCC 15697 / DSM 20088 / JCM 1222 / NCTC 11817 / S12) RepID=B7GRW6_BIFLS
hypothetical protein
Zinc finger, SWIM domain protein {ECO:0000313|EMBL:ACJ52546.1}; TaxID=391904 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. infantis (strain ATCC 15697 / DSM 20088; / JCM 1222 / NCTC 11817 / S12).;"
S13_scaffold_503_curated_17
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17798..18097)
DNA (300bp) protein (100aa)
msrAB; Peptide methionine sulfoxide reductaseMsrA/MsrB (EC:1.8.4.11 1.8.4.12)
Methionine-R-sulfoxide reductase {ECO:0000313|EMBL:EFH15463.1}; EC=1.8.4.- {ECO:0000313|EMBL:EFH15463.1};; TaxID=525258 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile NAP07.;"
Methionine-R-sulfoxide reductase n=6 Tax=Clostridium difficile RepID=D5S0A0_CLODI
S13_scaffold_503_curated_18
GWF2_Clostridiales_36_10_curated, Clostridiales, Bacteria

Not on your lists

comp(18312..20798)
DNA (2487bp) protein (829aa)
CoA-disulfide reductase (EC:1.8.1.14) rbh
CoA-disulfide reductase id=2108302 bin=GWE2_Firmicute_51_13 species=Tepidanaerobacter acetatoxydans genus=Tepidanaerobacter taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWE2_Firmicute_51_13 organism_group=Firmicute organism_desc=Good + rbh
Tax=GWF2_Clostridiales_36_10_curated
S13_scaffold_503_curated_19
GWF2_Firmicutes_51_9_curated, Firmicutes, Bacteria

Not on your lists

comp(20941..21810)
DNA (870bp) protein (290aa)
SMF family protein id=2108296 bin=GWE2_Firmicute_51_13 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWE2_Firmicute_51_13 organism_group=Firmicute organism_desc=Good +
Tax=GWF2_Firmicutes_51_9_curated
S13_scaffold_503_curated_20
BJP_IG2102_Clostridiales_34_350, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21803..22411)
DNA (609bp) protein (203aa)
hypothetical protein n=1 Tax=Clostridium sporosphaeroides RepID=UPI000371D0A3
hypothetical protein
Tax=BJP_IG2102_Clostridiales_34_350
Displaying 20 items

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