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S13_scaffold_523_curated

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Displaying 23 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
S13_scaffold_523_curated_1
GWF2_Firmicutes_51_9_curated, Firmicutes, Bacteria

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comp(1..534)
DNA (534bp) protein (178aa)
tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (EC:2.1.1.61)
tRNA-specific 2-thiouridylase MnmA id=2134020 bin=GWE2_Firmicute_51_13 species=Holdemania filiformis genus=Holdemania taxon_order=Erysipelotrichales taxon_class=Erysipelotrichia phylum=Firmicutes tax=GWE2_Firmicute_51_13 organism_group=Firmicute organism_desc=Good +
Tax=GWF2_Firmicutes_51_9_curated
S13_scaffold_523_curated_2
GWF2_Firmicutes_51_9_curated, Firmicutes, Bacteria

Not on your lists

comp(570..1034)
DNA (465bp) protein (155aa)
Putative uncharacterized protein id=4676055 bin=GWF2_Firmicute_51_9 species=Holdemania filiformis genus=Holdemania taxon_order=Erysipelotrichales taxon_class=Erysipelotrichia phylum=Firmicutes tax=GWF2_Firmicute_51_9 organism_group=Firmicute
transcriptional regulator Spx
Tax=GWF2_Firmicutes_51_9_curated
S13_scaffold_523_curated_3
GWF2_Firmicutes_51_9_curated, Firmicutes, Bacteria

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1312..2706
DNA (1395bp) protein (465aa)
Amino acid permease id=1846332 bin=GWE2_Firmicute_51_13 species=Lactococcus raffinolactis genus=Lactococcus taxon_order=Lactobacillales taxon_class=Bacilli phylum=Firmicutes tax=GWE2_Firmicute_51_13 organism_group=Firmicute organism_desc=Good + rbh
amino acid permease rbh
Tax=GWF2_Firmicutes_51_9_curated
S13_scaffold_523_curated_4
GWF2_Firmicutes_51_9_curated, Firmicutes, Bacteria

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2958..3941
DNA (984bp) protein (328aa)
Tryptophan--tRNA ligase id=4676053 bin=GWF2_Firmicute_51_9 species=Holdemania filiformis genus=Holdemania taxon_order=Erysipelotrichales taxon_class=Erysipelotrichia phylum=Firmicutes tax=GWF2_Firmicute_51_9 organism_group=Firmicute rbh
trpS; tryptophanyl-tRNA synthetase rbh
Tax=GWF2_Firmicutes_51_9_curated
S13_scaffold_523_curated_5
GWF2_Firmicutes_51_9_curated, Firmicutes, Bacteria

Not on your lists

4178..4486
DNA (309bp) protein (103aa)
alanyl-tRNA synthetase (EC:6.1.1.7)
UPI000319EFC6 related cluster n=1 Tax=unknown RepID=UPI000319EFC6
Suspect SCG annotation. See neighboring gene [S13_scaffold_523_curated_6].
Tax=GWF2_Firmicutes_51_9_curated
S13_scaffold_523_curated_6
GWF2_Firmicutes_51_9_curated, Firmicutes, Bacteria

Not on your lists


4550..6796
DNA (2247bp) protein (749aa)
alanyl-tRNA synthetase (EC:6.1.1.7) rbh
Alanine--tRNA ligase id=2134008 bin=GWE2_Firmicute_51_13 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Firmicutes tax=GWE2_Firmicute_51_13 organism_group=Firmicute organism_desc=Good + rbh
Tax=GWF2_Firmicutes_51_9_curated
S13_scaffold_523_curated_7
GWF2_Firmicutes_51_9_curated, Firmicutes, Bacteria

Not on your lists

6852..7112
DNA (261bp) protein (87aa)
Putative uncharacterized protein id=2134006 bin=GWE2_Firmicute_51_13 species=Holdemania filiformis genus=Holdemania taxon_order=Erysipelotrichales taxon_class=Erysipelotrichia phylum=Firmicutes tax=GWE2_Firmicute_51_13 organism_group=Firmicute organism_desc=Good +
hypothetical protein
Tax=GWF2_Firmicutes_51_9_curated
S13_scaffold_523_curated_8
[Eubacterium] dolichum, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

7109..7552
DNA (444bp) protein (148aa)
Putative Holliday junction resolvase {ECO:0000256|HAMAP-Rule:MF_00651, ECO:0000256|SAAS:SAAS00086483}; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00651, ECO:0000256|SAAS:SAAS00086510};; TaxID=428127 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae.;" source="[Eubacterium] dolichum DSM 3991.;"
Putative Holliday junction resolvase n=1 Tax=Eubacterium dolichum DSM 3991 RepID=A8RCB0_9FIRM
Holliday junction resolvase
S13_scaffold_523_curated_9
GWF2_Firmicutes_51_9_curated, Firmicutes, Bacteria

Not on your lists

7539..7805
DNA (267bp) protein (89aa)
UPF0473 protein HMPREF0863_00736 id=4676041 bin=GWF2_Firmicute_51_9 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Firmicutes tax=GWF2_Firmicute_51_9 organism_group=Firmicute
hypothetical protein
Tax=GWF2_Firmicutes_51_9_curated
S13_scaffold_523_curated_10
GWF2_Firmicutes_51_9_curated, Firmicutes, Bacteria

Not on your lists

7777..8859
DNA (1083bp) protein (361aa)
Aminodeoxychorismate lyase id=2134000 bin=GWE2_Firmicute_51_13 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Firmicutes tax=GWE2_Firmicute_51_13 organism_group=Firmicute organism_desc=Good + rbh
hypothetical protein
Tax=GWF2_Firmicutes_51_9_curated
S13_scaffold_523_curated_11
GWF2_Firmicutes_51_9_curated, Firmicutes, Bacteria

Not on your lists

8869..9501
DNA (633bp) protein (211aa)
Uridine kinase id=2133997 bin=GWE2_Firmicute_51_13 species=Solobacterium moorei genus=Solobacterium taxon_order=Erysipelotrichales taxon_class=Erysipelotrichia phylum=Firmicutes tax=GWE2_Firmicute_51_13 organism_group=Firmicute organism_desc=Good + rbh
udk; uridine kinase
Tax=GWF2_Firmicutes_51_9_curated
S13_scaffold_523_curated_12
GWF2_Firmicutes_51_9_curated, Firmicutes, Bacteria

Not on your lists

9526..9993
DNA (468bp) protein (156aa)
Transcription elongation factor GreA id=4676038 bin=GWF2_Firmicute_51_9 species=Holdemania filiformis genus=Holdemania taxon_order=Erysipelotrichales taxon_class=Erysipelotrichia phylum=Firmicutes tax=GWF2_Firmicute_51_9 organism_group=Firmicute
greA; transcription elongation factor GreA
Tax=GWF2_Firmicutes_51_9_curated
S13_scaffold_523_curated_13
GWF2_Firmicutes_51_9_curated, Firmicutes, Bacteria

Not on your lists

10029..10475
DNA (447bp) protein (149aa)
ComEA protein id=2133991 bin=GWE2_Firmicute_51_13 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Firmicutes tax=GWE2_Firmicute_51_13 organism_group=Firmicute organism_desc=Good +
ComEA protein
Tax=GWF2_Firmicutes_51_9_curated
S13_scaffold_523_curated_14
unknown

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11002..11283
DNA (282bp) protein (94aa)

This feature has no annotations

S13_scaffold_523_curated_15
GWF2_Firmicutes_51_9_curated, Firmicutes, Bacteria

Not on your lists

12398..13381
DNA (984bp) protein (328aa)
DNA polymerase III, delta subunit id=4676035 bin=GWF2_Firmicute_51_9 species=Erysipelotrichaceae bacterium 3_1_53 genus=unknown taxon_order=Erysipelotrichales taxon_class=Erysipelotrichia phylum=Firmicutes tax=GWF2_Firmicute_51_9 organism_group=Firmicute
DNA polymerase III subunit delta
Tax=GWF2_Firmicutes_51_9_curated
S13_scaffold_523_curated_16
GWF2_Firmicutes_51_9_curated, Firmicutes, Bacteria

Not on your lists

13369..14586
DNA (1218bp) protein (406aa)
L-serine ammonia-lyase (EC:4.3.1.17) rbh
Putative uncharacterized protein id=4676034 bin=GWF2_Firmicute_51_9 species=Holdemania filiformis genus=Holdemania taxon_order=Erysipelotrichales taxon_class=Erysipelotrichia phylum=Firmicutes tax=GWF2_Firmicute_51_9 organism_group=Firmicute rbh
Tax=GWF2_Firmicutes_51_9_curated
S13_scaffold_523_curated_17
GWF2_Firmicutes_51_9_curated, Firmicutes, Bacteria

Not on your lists


comp(14644..14907)
DNA (264bp) protein (88aa)
30S ribosomal protein S20 id=4676001 bin=GWF2_Firmicute_51_9 species=[Eubacterium] dolichum genus=unknown taxon_order=Erysipelotrichales taxon_class=Erysipelotrichia phylum=Firmicutes tax=GWF2_Firmicute_51_9 organism_group=Firmicute
SSU ribosomal protein S20P
Tax=GWF2_Firmicutes_51_9_curated
S13_scaffold_523_curated_18
GWF2_Firmicutes_51_9_curated, Firmicutes, Bacteria

Not on your lists

15071..16003
DNA (933bp) protein (311aa)
Methionyl-tRNA formyltransferase id=2133920 bin=GWE2_Firmicute_51_13 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Firmicutes tax=GWE2_Firmicute_51_13 organism_group=Firmicute organism_desc=Good + rbh
fmt; methionyl-tRNA formyltransferase rbh
Tax=GWF2_Firmicutes_51_9_curated
S13_scaffold_523_curated_19
GWF2_Firmicutes_51_9_curated, Firmicutes, Bacteria

Not on your lists

15945..16484
DNA (540bp) protein (180aa)
Membrane spanning protein id=4675997 bin=GWF2_Firmicute_51_9 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Firmicutes tax=GWF2_Firmicute_51_9 organism_group=Firmicute
hypothetical protein
Tax=GWF2_Firmicutes_51_9_curated
S13_scaffold_523_curated_20
GWF2_Firmicutes_51_9_curated, Firmicutes, Bacteria

Not on your lists

16497..18296
DNA (1800bp) protein (600aa)
Elongation factor 4 id=4675995 bin=GWF2_Firmicute_51_9 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Firmicutes tax=GWF2_Firmicute_51_9 organism_group=Firmicute rbh
lepA; GTP-binding protein LepA rbh
Tax=GWF2_Firmicutes_51_9_curated
S13_scaffold_523_curated_21
GWF2_Firmicutes_51_9_curated, Firmicutes, Bacteria

Not on your lists

18296..18571
DNA (276bp) protein (92aa)
Putative uncharacterized protein id=4675993 bin=GWF2_Firmicute_51_9 species=Holdemania filiformis genus=Holdemania taxon_order=Erysipelotrichales taxon_class=Erysipelotrichia phylum=Firmicutes tax=GWF2_Firmicute_51_9 organism_group=Firmicute
hypothetical protein
Tax=GWF2_Firmicutes_51_9_curated
S13_scaffold_523_curated_22
GWF2_Firmicutes_51_9_curated, Firmicutes, Bacteria

Not on your lists

18558..19661
DNA (1104bp) protein (368aa)
coproporphyrinogen III oxidase (EC:1.3.99.22) rbh
Putative uncharacterized protein id=4675991 bin=GWF2_Firmicute_51_9 species=Holdemania filiformis genus=Holdemania taxon_order=Erysipelotrichales taxon_class=Erysipelotrichia phylum=Firmicutes tax=GWF2_Firmicute_51_9 organism_group=Firmicute rbh
Tax=GWF2_Firmicutes_51_9_curated
S13_scaffold_523_curated_23
unknown

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19865..20017
DNA (153bp) protein (51aa)

This feature has no annotations

Displaying 23 items

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