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S13_scaffold_658_curated

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Displaying 17 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
S13_scaffold_658_curated_1
GWF2_Firmicutes_51_9_curated, Firmicutes, Bacteria

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1..768
DNA (768bp) protein (256aa)
Putative uncharacterized protein id=4340714 bin=GWF2_Firmicute_51_9 species=Holdemania filiformis genus=Holdemania taxon_order=Erysipelotrichales taxon_class=Erysipelotrichia phylum=Firmicutes tax=GWF2_Firmicute_51_9 organism_group=Firmicute
ribF; riboflavin kinase/FAD synthetase
Tax=GWF2_Firmicutes_51_9_curated
S13_scaffold_658_curated_2
GWF2_Firmicutes_51_9_curated, Firmicutes, Bacteria

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1072..1725
DNA (654bp) protein (218aa)
YqiY protein id=1870272 bin=GWE2_Firmicute_51_13 species=Bacillus sp. 2_A_57_CT2 genus=Bacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWE2_Firmicute_51_13 organism_group=Firmicute organism_desc=Good +
ABC transporter, permease protein
Tax=GWF2_Firmicutes_51_9_curated
S13_scaffold_658_curated_3
GWF2_Firmicutes_51_9_curated, Firmicutes, Bacteria

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1718..2440
DNA (723bp) protein (241aa)
ABC transporter, ATP-binding protein id=4340660 bin=GWF2_Firmicute_51_9 species=[Eubacterium] dolichum genus=unknown taxon_order=Erysipelotrichales taxon_class=Erysipelotrichia phylum=Firmicutes tax=GWF2_Firmicute_51_9 organism_group=Firmicute rbh
amino acid ABC transporter ATP-binding protein
Tax=GWF2_Firmicutes_51_9_curated
S13_scaffold_658_curated_4
Mollicutes bacterium HR1, Mollicutes, Tenericutes, Bacteria

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2455..3219
DNA (765bp) protein (255aa)
artP_1; Arginine-binding extracellular protein ArtP precursor
Arginine-binding extracellular protein ArtP {ECO:0000313|EMBL:AIO19061.1}; TaxID=1541959 species="Bacteria; Tenericutes; Mollicutes.;" source="Mollicutes bacterium HR1.;"
Arginine ABC transporter, periplasmic arginine-binding protein ArtP id=1870274 bin=GWE2_Firmicute_51_13 species=[Eubacterium] dolichum genus=unknown taxon_order=Erysipelotrichales taxon_class=Erysipelotrichia phylum=Firmicutes tax=GWE2_Firmicute_51_13 organism_group=Firmicute organism_desc=Good +
S13_scaffold_658_curated_5
GWF2_Firmicutes_51_9_curated, Firmicutes, Bacteria

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3266..3589
DNA (324bp) protein (108aa)
Putative uncharacterized protein id=1870275 bin=GWE2_Firmicute_51_13 species=Holdemania filiformis genus=Holdemania taxon_order=Erysipelotrichales taxon_class=Erysipelotrichia phylum=Firmicutes tax=GWE2_Firmicute_51_13 organism_group=Firmicute organism_desc=Good +
Protein of unknown function (DUF322).
Tax=GWF2_Firmicutes_51_9_curated
S13_scaffold_658_curated_6
GWF2_Firmicutes_51_9_curated, Firmicutes, Bacteria

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3624..4004
DNA (381bp) protein (127aa)
Transcription antitermination factor NusB id=1870276 bin=GWE2_Firmicute_51_13 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Firmicutes tax=GWE2_Firmicute_51_13 organism_group=Firmicute organism_desc=Good +
transcription antitermination protein NusB
Tax=GWF2_Firmicutes_51_9_curated
S13_scaffold_658_curated_7
GWF2_Firmicutes_51_9_curated, Firmicutes, Bacteria

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3997..5328
DNA (1332bp) protein (444aa)
xseA; Exodeoxyribonuclease 7 large subunit (EC:3.1.11.6)
Exodeoxyribonuclease 7 large subunit id=1870295 bin=GWE2_Firmicute_51_13 species=Holdemania filiformis genus=Holdemania taxon_order=Erysipelotrichales taxon_class=Erysipelotrichia phylum=Firmicutes tax=GWE2_Firmicute_51_13 organism_group=Firmicute organism_desc=Good + rbh
Tax=GWF2_Firmicutes_51_9_curated
S13_scaffold_658_curated_8
Eubacterium sp. 3_1_31, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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5321..5533
DNA (213bp) protein (71aa)
Exodeoxyribonuclease 7 small subunit {ECO:0000256|HAMAP-Rule:MF_00337, ECO:0000256|SAAS:SAAS00198685}; EC=3.1.11.6 {ECO:0000256|HAMAP-Rule:MF_00337, ECO:0000256|SAAS:SAAS00198686};; Exodeoxyribonuclease VII small subunit {ECO:0000256|HAMAP-Rule:MF_00337}; TaxID=457402 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium sp. 3_1_31.;"
xseB; exodeoxyribonuclease VII small subunit (EC:3.1.11.6)
Exodeoxyribonuclease 7 small subunit n=2 Tax=Firmicutes RepID=H1BKX1_9FIRM
S13_scaffold_658_curated_9
Catenibacterium mitsuokai, Catenibacterium, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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5520..6380
DNA (861bp) protein (287aa)
Polyprenyl synthetase n=1 Tax=Catenibacterium mitsuokai DSM 15897 RepID=E2NV47_9FIRM
Polyprenyl synthetase {ECO:0000313|EMBL:EEF92916.1}; TaxID=451640 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Catenibacterium.;" source="Catenibacterium mitsuokai DSM 15897.;"
ispA; geranyltranstransferase
S13_scaffold_658_curated_10
GWF2_Firmicutes_51_9_curated, Firmicutes, Bacteria

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6622..8253
DNA (1632bp) protein (544aa)
dxs; 1-deoxy-D-xylulose-5-phosphate synthase (EC:2.2.1.7) rbh
1-deoxy-D-xylulose-5-phosphate synthase id=4340653 bin=GWF2_Firmicute_51_9 species=Holdemania filiformis genus=Holdemania taxon_order=Erysipelotrichales taxon_class=Erysipelotrichia phylum=Firmicutes tax=GWF2_Firmicute_51_9 organism_group=Firmicute rbh
Tax=GWF2_Firmicutes_51_9_curated
S13_scaffold_658_curated_11
GWF2_Firmicutes_51_9_curated, Firmicutes, Bacteria

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8282..9949
DNA (1668bp) protein (556aa)
Putative uncharacterized protein id=1870309 bin=GWE2_Firmicute_51_13 species=Holdemania filiformis genus=Holdemania taxon_order=Erysipelotrichales taxon_class=Erysipelotrichia phylum=Firmicutes tax=GWE2_Firmicute_51_13 organism_group=Firmicute organism_desc=Good + rbh
DNA replication and repair protein RecN rbh
Tax=GWF2_Firmicutes_51_9_curated
S13_scaffold_658_curated_12
GWF2_Firmicutes_51_9_curated, Firmicutes, Bacteria

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9942..10838
DNA (897bp) protein (299aa)
Tyrosine recombinase XerC id=4048780 bin=GWF2_Firmicute_51_9 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Firmicutes tax=GWF2_Firmicute_51_9 organism_group=Firmicute
tyrosine recombinase XerD
Tax=GWF2_Firmicutes_51_9_curated
S13_scaffold_658_curated_13
Holdemania filiformis, Holdemania, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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10844..12022
DNA (1179bp) protein (393aa)
Phosphopentomutase {ECO:0000256|HAMAP-Rule:MF_00740, ECO:0000256|SAAS:SAAS00010015}; EC=5.4.2.7 {ECO:0000256|HAMAP-Rule:MF_00740, ECO:0000256|SAAS:SAAS00009998};; Phosphodeoxyribomutase {ECO:0000256|HAMAP-Rule:MF_00740}; TaxID=545696 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemania.;" source="Holdemania filiformis DSM 12042.;"
Phosphopentomutase n=1 Tax=Holdemania filiformis DSM 12042 RepID=B9YCM6_9FIRM rbh
deoB; phosphopentomutase rbh
S13_scaffold_658_curated_14
GWF2_Firmicutes_51_9_curated, Firmicutes, Bacteria

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comp(12089..12490)
DNA (402bp) protein (134aa)
UPI00031CF17D related cluster n=1 Tax=unknown RepID=UPI00031CF17D
hypothetical protein
Tax=GWF2_Firmicutes_51_9_curated
S13_scaffold_658_curated_15
GWF2_Firmicutes_51_9_curated, Firmicutes, Bacteria

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comp(12587..13588)
DNA (1002bp) protein (334aa)
Chitinase B id=1870317 bin=GWE2_Firmicute_51_13 species=Lactobacillus casei genus=Lactobacillus taxon_order=Lactobacillales taxon_class=Bacilli phylum=Firmicutes tax=GWE2_Firmicute_51_13 organism_group=Firmicute organism_desc=Good +
Tax=GWF2_Firmicutes_51_9_curated
S13_scaffold_658_curated_16
unknown

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comp(13573..13947)
DNA (375bp) protein (125aa)

This feature has no annotations

S13_scaffold_658_curated_17
GWF2_Firmicutes_51_9_curated, Firmicutes, Bacteria

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comp(14005..14610)
DNA (606bp) protein (202aa)
Putative uncharacterized protein id=4048776 bin=GWF2_Firmicute_51_9 species=Holdemania filiformis genus=Holdemania taxon_order=Erysipelotrichales taxon_class=Erysipelotrichia phylum=Firmicutes tax=GWF2_Firmicute_51_9 organism_group=Firmicute
putative neutral zinc metallopeptidase
Tax=GWF2_Firmicutes_51_9_curated
Displaying 17 items

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