ggKbase home page

S15_scaffold_449_curated

Search features with annotation key words

Displaying 27 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
S15_scaffold_449_curated_1
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1..1071)
DNA (1071bp) protein (357aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PSP5_9BRAD rbh
Uncharacterized protein {ECO:0000313|EMBL:EKS41378.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
hypothetical protein rbh
S15_scaffold_449_curated_trna_1
unknown

Not on your lists

comp(1379..1450)
DNA (72bp)
transferRNA Gln
S15_scaffold_449_curated_2
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1975..3759
DNA (1785bp) protein (595aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PFB2_9BRAD rbh
Uncharacterized protein {ECO:0000313|EMBL:EKS41312.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
putative acyl-CoA dehydrogenase rbh
S15_scaffold_449_curated_3
unknown

Not on your lists

comp(3831..4079)
DNA (249bp) protein (83aa)

This feature has no annotations

S15_scaffold_449_curated_4
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4240..5187)
DNA (948bp) protein (316aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PIH1_9BRAD rbh
Uncharacterized protein {ECO:0000313|EMBL:EKS41311.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
lactoylglutathione lyase-like lyase rbh
S15_scaffold_449_curated_5
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5326..6090
DNA (765bp) protein (255aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PP88_9BRAD rbh
Uncharacterized protein {ECO:0000313|EMBL:EKS41310.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
enoyl-CoA hydratase/isomerase rbh
S15_scaffold_449_curated_6
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6132..7061
DNA (930bp) protein (310aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PKN6_9BRAD rbh
Uncharacterized protein {ECO:0000313|EMBL:EKS41309.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
hypothetical protein rbh
S15_scaffold_449_curated_7
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7299..7550
DNA (252bp) protein (84aa)
Exodeoxyribonuclease 7 small subunit {ECO:0000256|HAMAP-Rule:MF_00337, ECO:0000256|SAAS:SAAS00198685}; EC=3.1.11.6 {ECO:0000256|HAMAP-Rule:MF_00337, ECO:0000256|SAAS:SAAS00198686};; Exodeoxyribonuclease VII small subunit {ECO:0000256|HAMAP-Rule:MF_00337}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
exodeoxyribonuclease VII small subunit (EC:3.1.11.6)
exodeoxyribonuclease VII small subunit n=1 Tax=Afipia birgiae RepID=UPI0003615F23
S15_scaffold_449_curated_8
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7947..9881
DNA (1935bp) protein (645aa)
1-deoxy-D-xylulose-5-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00315, ECO:0000256|SAAS:SAAS00085897}; EC=2.2.1.7 {ECO:0000256|HAMAP-Rule:MF_00315, ECO:0000256|SAAS:SAAS00085897};; 1-deoxyxylulose-5-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00315}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
dxs; 1-deoxy-D-xylulose-5-phosphate synthase (EC:2.2.1.7) rbh
1-deoxy-D-xylulose-5-phosphate synthase n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PFA8_9BRAD rbh
S15_scaffold_449_curated_9
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9987..10718
DNA (732bp) protein (244aa)
rrmJ; ribosomal RNA large subunit methyltransferase J (EC:2.1.1.-) rbh
Hemolysin TlyA family protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PIG6_9BRAD rbh
Hemolysin TlyA family protein {ECO:0000313|EMBL:EKS41306.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
S15_scaffold_449_curated_10
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10880..12118
DNA (1239bp) protein (413aa)
RNA methyltransferase (EC:2.1.1.-) rbh
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PP83_9BRAD rbh
Uncharacterized protein {ECO:0000313|EMBL:EKS41305.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
S15_scaffold_449_curated_11
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13479..15161
DNA (1683bp) protein (561aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PSI2_9BRAD rbh
Uncharacterized protein {ECO:0000313|EMBL:EKS41303.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
putative chemotaxis sensory transducer rbh
S15_scaffold_449_curated_12
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15459..17150
DNA (1692bp) protein (564aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PFA6_9BRAD rbh
Uncharacterized protein {ECO:0000313|EMBL:EKS41302.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
methyl-accepting chemotaxis protein rbh
S15_scaffold_449_curated_13
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17199..18059)
DNA (861bp) protein (287aa)
LysR family transcriptional regulator n=1 Tax=Mesorhizobium sp. LSHC420B00 RepID=V7FG41_9RHIZ rbh
LysR family transcriptional regulator {ECO:0000313|EMBL:KIZ37421.1}; TaxID=1076 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris.;"
transcriptional regulator rbh
S15_scaffold_449_curated_14
unknown

Not on your lists

18172..18417
DNA (246bp) protein (82aa)

This feature has no annotations

S15_scaffold_449_curated_15
unknown

Not on your lists

18414..18650
DNA (237bp) protein (79aa)

This feature has no annotations

S15_scaffold_449_curated_16
Nitrobacter sp. Nb-311A, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18684..19112
DNA (429bp) protein (143aa)
Probable bacterial hemoglobin n=1 Tax=Nitrobacter sp. Nb-311A RepID=A3WZM3_9BRAD
Probable bacterial hemoglobin {ECO:0000313|EMBL:EAQ34568.1}; TaxID=314253 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter sp. Nb-311A.;"
hemoglobin
S15_scaffold_449_curated_17
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19113..20339)
DNA (1227bp) protein (409aa)
guanylate cyclase (EC:4.6.1.1) rbh
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PKM7_9BRAD rbh
Uncharacterized protein {ECO:0000313|EMBL:EKS41299.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
S15_scaffold_449_curated_18
Bradyrhizobiaceae bacterium SG-6C, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20395..21561)
DNA (1167bp) protein (389aa)
hypothetical protein n=1 Tax=Afipia birgiae RepID=UPI0002DD579A rbh
Uncharacterized protein {ECO:0000313|EMBL:EGP08558.1}; TaxID=709797 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae.;" source="Bradyrhizobiaceae bacterium SG-6C.;"
hypothetical protein rbh
S15_scaffold_449_curated_19
Bradyrhizobium sp. DFCI-1, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21692..22888)
DNA (1197bp) protein (399aa)
Salicylate hydroxylase n=1 Tax=Bradyrhizobium sp. DFCI-1 RepID=U1HAH7_9BRAD rbh
Salicylate hydroxylase {ECO:0000313|EMBL:ERF81758.1}; TaxID=1230476 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. DFCI-1.;"
monooxygenase
S15_scaffold_449_curated_20
Bradyrhizobium sp. LTSPM299, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22983..23492
DNA (510bp) protein (170aa)
Transcriptional regulatory protein n=1 Tax=Bradyrhizobium diazoefficiens (strain JCM 10833 / IAM 13628 / NBRC 14792 / USDA 110) RepID=Q89KD1_BRADU
Transcriptional regulator {ECO:0000313|EMBL:KJC56876.1}; TaxID=1619233 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSPM299.;"
transcriptional regulator
S15_scaffold_449_curated_21
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23533..24615)
DNA (1083bp) protein (361aa)
Chorismate synthase {ECO:0000256|HAMAP-Rule:MF_00300, ECO:0000256|RuleBase:RU000605}; Short=CS {ECO:0000256|HAMAP-Rule:MF_00300};; EC=4.2.3.5 {ECO:0000256|HAMAP-Rule:MF_00300, ECO:0000256|RuleBase:RU000605};; 5-enolpyruvylshikimate-3-phosphate phospholyase {ECO:0000256|HAMAP-Rule:MF_00300}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
aroC; chorismate synthase AroC (EC:4.2.3.5) rbh
chorismate synthase n=1 Tax=Afipia birgiae RepID=UPI000310EC00 rbh
S15_scaffold_449_curated_22
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24732..25331)
DNA (600bp) protein (200aa)
phosphoglycerate kinase n=1 Tax=Afipia birgiae RepID=UPI0002F3360F rbh
Uncharacterized protein {ECO:0000313|EMBL:EKS41295.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
phosphoglycerate mutase rbh
S15_scaffold_449_curated_23
Oligotropha carboxidovorans, Oligotropha, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25478..26299)
DNA (822bp) protein (274aa)
enoyl-ACP reductase (EC:1.3.1.9) rbh
Enoyl-[acyl-carrier-protein] reductase [NADH] 1 {ECO:0000313|EMBL:AEI05898.1}; EC=1.3.1.9 {ECO:0000313|EMBL:AEI05898.1};; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
enoyl-ACP reductase n=1 Tax=Afipia birgiae RepID=UPI0002D570DF rbh
S15_scaffold_449_curated_24
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26640..27131
DNA (492bp) protein (164aa)
RNA polymerase sigma factor n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PKM2_9BRAD rbh
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000716}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
sigma-24 (FecI-like)
S15_scaffold_449_curated_25
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27349..28119
DNA (771bp) protein (257aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PSH3_9BRAD rbh
Uncharacterized protein {ECO:0000313|EMBL:EKS41293.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
hypothetical protein rbh
S15_scaffold_449_curated_26
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28135..29370)
DNA (1236bp) protein (412aa)
DNA-binding protein n=1 Tax=Afipia birgiae RepID=UPI0002E243C6 rbh
Uncharacterized protein {ECO:0000313|EMBL:EKS41292.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
hypothetical protein rbh
Displaying 27 items

View Taxonomy