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S15_scaffold_340_curated

Search features with annotation key words

Displaying items 1-30 of 37 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
S15_scaffold_340_curated_1
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(223..543)
DNA (321bp) protein (107aa)
Thioredoxin n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8P2E7_9BRAD
Thioredoxin {ECO:0000256|PIRNR:PIRNR000077}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
trxA; thioredoxin C-1
S15_scaffold_340_curated_2
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(750..4265)
DNA (3516bp) protein (1172aa)
DNA helicase {ECO:0000256|SAAS:SAAS00145970}; EC=3.6.4.12 {ECO:0000256|SAAS:SAAS00145970};; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
Double-strand break repair helicase AddA n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8P5E5_9BRAD rbh
helicase 2 rbh
S15_scaffold_340_curated_3
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4262..5263)
DNA (1002bp) protein (334aa)
Double-strand break repair protein AddB n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8P0D9_9BRAD
Double-strand break repair protein AddB {ECO:0000313|EMBL:EKS34891.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
helicase-exonuclease type V family protein AddB subunit
S15_scaffold_340_curated_4
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5267..7420)
DNA (2154bp) protein (718aa)
Double-strand break repair protein AddB n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8P0D9_9BRAD rbh
Double-strand break repair protein AddB {ECO:0000313|EMBL:EKS34891.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
hypothetical protein rbh
S15_scaffold_340_curated_5
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7491..8213)
DNA (723bp) protein (241aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8NX32_9BRAD rbh
Uncharacterized protein {ECO:0000313|EMBL:EKS34892.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
nucleotidyl transferase rbh
S15_scaffold_340_curated_6
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8392..8715)
DNA (324bp) protein (108aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8P963_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS34893.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
hypothetical protein
S15_scaffold_340_curated_7
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8855..10378)
DNA (1524bp) protein (508aa)
YjeE family ATPase n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8P2F1_9BRAD rbh
YjeE family ATPase {ECO:0000313|EMBL:EKS34894.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
hypothetical protein rbh
S15_scaffold_340_curated_8
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10375..12903)
DNA (2529bp) protein (843aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8P5F0_9BRAD rbh
PAS/PAC sensor signal transduction histidine kinase rbh
S15_scaffold_340_curated_9
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13057..13515)
DNA (459bp) protein (153aa)
Deoxyuridine 5'-triphosphate nucleotidohydrolase {ECO:0000256|HAMAP-Rule:MF_00116, ECO:0000256|SAAS:SAAS00071038}; Short=dUTPase {ECO:0000256|HAMAP-Rule:MF_00116};; EC=3.6.1.23 {ECO:0000256|HAMAP-Rule:MF_00116, ECO:0000256|SAAS:SAAS00071036};; dUTP pyrophosphatase {ECO:0000256|HAMAP-Rule:MF_00116}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
Deoxyuridine 5'-triphosphate nucleotidohydrolase n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8P0E4_9BRAD
dut; deoxyuridine 5'-triphosphate nucleotidohydrolase
S15_scaffold_340_curated_10
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13512..14942)
DNA (1431bp) protein (477aa)
phosphopantothenate synthase n=1 Tax=Afipia birgiae RepID=UPI00031E4093 rbh
Phosphopantothenoylcysteine decarboxylase/phosphopantothenate-cysteine ligase {ECO:0000313|EMBL:EKS34897.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
coaBC; bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase rbh
S15_scaffold_340_curated_11
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15032..16600)
DNA (1569bp) protein (523aa)
Probable protein kinase UbiB {ECO:0000256|SAAS:SAAS00063507}; EC=2.7.-.- {ECO:0000256|SAAS:SAAS00063486};; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
ubiB; 2-polyprenylphenol 6-hydroxylase (EC:1.14.13.-) rbh
2-polyprenylphenol 6-hydroxylase n=1 Tax=Afipia birgiae RepID=UPI000371B076 rbh
S15_scaffold_340_curated_12
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16597..17358)
DNA (762bp) protein (254aa)
Ubiquinone/menaquinone biosynthesis C-methyltransferase UbiE {ECO:0000256|HAMAP-Rule:MF_01813}; EC=2.1.1.163 {ECO:0000256|HAMAP-Rule:MF_01813};; EC=2.1.1.201 {ECO:0000256|HAMAP-Rule:MF_01813};; 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase {ECO:0000256|HAMAP-Rule:MF_01813}; Demethylmenaquinone methyltransferase {ECO:0000256|HAMAP-Rule:MF_01813}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
Ubiquinone/menaquinone biosynthesis C-methyltransferase UbiE n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8P2F3_9BRAD rbh
ubiE; ubiquinone/menaquinone biosynthesis methyltransferase rbh
S15_scaffold_340_curated_13
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17454..17876
DNA (423bp) protein (141aa)
bleomycin resistance protein n=1 Tax=Afipia birgiae RepID=UPI0002FB8AEA
Uncharacterized protein {ECO:0000313|EMBL:EKS34900.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
bleomycin resistance protein
S15_scaffold_340_curated_14
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17886..18767
DNA (882bp) protein (294aa)
Formamidopyrimidine-DNA glycosylase {ECO:0000256|HAMAP-Rule:MF_00103, ECO:0000256|SAAS:SAAS00020852}; Short=Fapy-DNA glycosylase {ECO:0000256|HAMAP-Rule:MF_00103};; EC=3.2.2.23 {ECO:0000256|HAMAP-Rule:MF_00103};; DNA-(apurinic or apyrimidinic site) lyase MutM {ECO:0000256|HAMAP-Rule:MF_00103}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
Formamidopyrimidine-DNA glycosylase n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8P0F0_9BRAD rbh
formamidopyrimidine-DNA glycosylase rbh
S15_scaffold_340_curated_15
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18946..20331)
DNA (1386bp) protein (462aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8NX39_9BRAD rbh
Uncharacterized protein {ECO:0000313|EMBL:EKS34902.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
peptidoglycan binding domain-containing protein rbh
S15_scaffold_340_curated_16
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20508..21308
DNA (801bp) protein (267aa)
thiamine biosynthesis protein ThiF n=1 Tax=Afipia birgiae RepID=UPI0002F9B10D rbh
Uncharacterized protein {ECO:0000313|EMBL:EKS34903.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
UBA/THIF-type NAD/FAD binding domain-containing protein rbh
S15_scaffold_340_curated_17
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21443..22447)
DNA (1005bp) protein (335aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8P2F8_9BRAD rbh
Uncharacterized protein {ECO:0000313|EMBL:EKS34904.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
D-isomer specific 2-hydroxyacid dehydrogenase rbh
S15_scaffold_340_curated_18
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22811..23344
DNA (534bp) protein (178aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8P5F9_9BRAD rbh
Uncharacterized protein {ECO:0000313|EMBL:EKS34905.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
hypothetical protein
S15_scaffold_340_curated_19
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23408..23893)
DNA (486bp) protein (162aa)
Fur family transcriptional regulator n=1 Tax=Afipia birgiae RepID=UPI00036057C2 rbh
Uncharacterized protein {ECO:0000313|EMBL:EKS34906.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
ferric-uptake regulator
S15_scaffold_340_curated_20
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24125..24655
DNA (531bp) protein (177aa)
3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase {ECO:0000256|HAMAP-Rule:MF_00405, ECO:0000256|SAAS:SAAS00064161}; EC=4.2.1.59 {ECO:0000256|HAMAP-Rule:MF_00405, ECO:0000256|SAAS:SAAS00064166};; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabA {ECO:0000256|HAMAP-Rule:MF_00405}; Beta-hydroxydecanoyl thioester dehydrase {ECO:0000256|HAMAP-Rule:MF_00405}; Trans-2-decenoyl-[acyl-carrier-protein] isomerase {ECO:0000256|HAMAP-Rule:MF_00405}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
3-hydroxydecanoyl-ACP dehydratase (EC:4.2.1.60) rbh
3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8NX43_9BRAD rbh
S15_scaffold_340_curated_21
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24768..25991
DNA (1224bp) protein (408aa)
3-oxoacyl-ACP synthase (EC:2.3.1.41) rbh
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8P976_9BRAD rbh
Uncharacterized protein {ECO:0000313|EMBL:EKS34908.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
S15_scaffold_340_curated_22
Afipia sp. 1NLS2, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26040..26849
DNA (810bp) protein (270aa)
Enoyl-[acyl-carrier-protein] reductase [NADH] {ECO:0000256|PIRNR:PIRNR000094}; EC=1.3.1.9 {ECO:0000256|PIRNR:PIRNR000094};; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. 1NLS2.;"
fabI1; enoyl-ACP reductase (NADH) (EC:1.3.1.9) rbh
enoyl-ACP reductase n=1 Tax=Afipia birgiae RepID=UPI0003048BC5 rbh
S15_scaffold_340_curated_23
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26866..27462)
DNA (597bp) protein (199aa)
glutathione S-transferase (EC:2.5.1.18) rbh
glutathione S-transferase n=1 Tax=Afipia birgiae RepID=UPI0002FF2A9B rbh
Uncharacterized protein {ECO:0000313|EMBL:EKS34910.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
S15_scaffold_340_curated_24
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27595..29790)
DNA (2196bp) protein (732aa)
Catalase-peroxidase {ECO:0000256|HAMAP-Rule:MF_01961, ECO:0000256|RuleBase:RU003451}; Short=CP {ECO:0000256|HAMAP-Rule:MF_01961};; EC=1.11.1.21 {ECO:0000256|HAMAP-Rule:MF_01961, ECO:0000256|RuleBase:RU003451};; Peroxidase/catalase {ECO:0000256|HAMAP-Rule:MF_01961}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53690.;"
Catalase-peroxidase n=1 Tax=Afipia felis ATCC 53690 RepID=K8NNR6_AFIFE rbh
catalase/peroxidase HPI rbh
S15_scaffold_340_curated_25
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30131..30886)
DNA (756bp) protein (252aa)
Superoxide dismutase {ECO:0000256|RuleBase:RU000414}; EC=1.15.1.1 {ECO:0000256|RuleBase:RU000414};; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
superoxide dismutase (EC:1.15.1.1) rbh
superoxide dismutase n=1 Tax=Afipia birgiae RepID=UPI0003773F06 rbh
S15_scaffold_340_curated_26
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31047..33191)
DNA (2145bp) protein (715aa)
Polyribonucleotide nucleotidyltransferase {ECO:0000256|HAMAP-Rule:MF_01595}; EC=2.7.7.8 {ECO:0000256|HAMAP-Rule:MF_01595};; Polynucleotide phosphorylase {ECO:0000256|HAMAP-Rule:MF_01595}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
Polyribonucleotide nucleotidyltransferase n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8P980_9BRAD rbh
pnpA; polynucleotide phosphorylase rbh
S15_scaffold_340_curated_27
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(33493..33762)
DNA (270bp) protein (90aa)
30S ribosomal protein S15 n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8P2G6_9BRAD
30S ribosomal protein S15 {ECO:0000256|HAMAP-Rule:MF_01343, ECO:0000256|RuleBase:RU003920}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
rpsO; 30S ribosomal protein S15
S15_scaffold_340_curated_28
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(33765..34970)
DNA (1206bp) protein (402aa)
tRNA pseudouridine synthase B {ECO:0000256|HAMAP-Rule:MF_01080, ECO:0000256|SAAS:SAAS00043051}; EC=5.4.99.25 {ECO:0000256|HAMAP-Rule:MF_01080, ECO:0000256|SAAS:SAAS00043054};; tRNA pseudouridine(55) synthase {ECO:0000256|HAMAP-Rule:MF_01080}; tRNA pseudouridylate synthase {ECO:0000256|HAMAP-Rule:MF_01080}; tRNA-uridine isomerase {ECO:0000256|HAMAP-Rule:MF_01080}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
tRNA pseudouridine synthase B n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8P5G8_9BRAD rbh
truB; tRNA pseudouridine synthase B rbh
S15_scaffold_340_curated_29
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(34970..35392)
DNA (423bp) protein (141aa)
Ribosome-binding factor A n=1 Tax=Afipia clevelandensis ATCC 49720 RepID=K8P0I2_9BRAD
Ribosome-binding factor A {ECO:0000256|HAMAP-Rule:MF_00003, ECO:0000256|SAAS:SAAS00023386}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
rbfA; ribosome-binding factor A
S15_scaffold_340_curated_30
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(35563..38169)
DNA (2607bp) protein (869aa)
Translation initiation factor IF-2 n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8NX50_9BRAD rbh
Translation initiation factor IF-2 {ECO:0000256|HAMAP-Rule:MF_00100, ECO:0000256|RuleBase:RU000644}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
infB; translation initiation factor IF-2 rbh
Displaying items 1-30 of 37 in total

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