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S15_scaffold_238_curated

Search features with annotation key words

Displaying items 1-30 of 73 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
S15_scaffold_238_curated_1
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2..235
DNA (234bp) protein (78aa)
pgk; phosphoglycerate kinase (EC:2.7.2.3); K00927 phosphoglycerate kinase [EC:2.7.2.3] id=5083007 bin=GWF1_Burkholderiales_GWF1_66_17 species=Albidiferax ferrireducens genus=Albidiferax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD
pgk; phosphoglycerate kinase (EC:2.7.2.3)
Tax=GWE1_Burkholderiales_65_30_curated
S15_scaffold_238_curated_2
RLO_Burkholderiales_64_33, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

466..1149
DNA (684bp) protein (228aa)
Uncharacterized protein n=1 Tax=Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC) RepID=E8TXU4_ALIDB
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_64_33_curated
S15_scaffold_238_curated_3
RLO_Burkholderiales_64_33, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1146..1700
DNA (555bp) protein (185aa)
hypothetical protein n=1 Tax=Acidovorax radicis RepID=UPI0002376347
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_64_33_curated
S15_scaffold_238_curated_4
BJP_08E140C01_10KDA_Burkholderiales_65_51, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1778..2893)
DNA (1116bp) protein (372aa)
hypothetical protein n=1 Tax=Curvibacter lanceolatus RepID=UPI0003791F66 rbh
fatty acid desaturase domain-containing protein
Tax=BJP_08E140C01_10KDA_Burkholderiales_65_51
S15_scaffold_238_curated_5
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3031..3594)
DNA (564bp) protein (188aa)
cyclic nucleotide-binding domain-containing protein id=5083492 bin=GWF1_Burkholderiales_GWF1_66_17 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD
cyclic nucleotide-binding domain-containing protein
Tax=GWE1_Burkholderiales_65_30_curated
S15_scaffold_238_curated_6
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3744..5174
DNA (1431bp) protein (477aa)
pyruvate kinase (EC:2.7.1.40); K00873 pyruvate kinase [EC:2.7.1.40] id=5082963 bin=GWF1_Burkholderiales_GWF1_66_17 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD rbh
pyruvate kinase (EC:2.7.1.40) rbh
Tax=GWE1_Burkholderiales_65_30_curated
S15_scaffold_238_curated_7
R_Burkholderiales_67_14, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5309..6373
DNA (1065bp) protein (355aa)
fructose-bisphosphate aldolase (EC:4.1.2.13) rbh
Fructose-bisphosphate aldolase, class II, Calvin cycle subtype id=1287802 bin=GWE1_Burkholderiales_65_30 species=Acidovorax delafieldii genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_Burkholderiales_65_30 organism_group=Betaproteobacteria rbh
Tax=RifCSPlowO2_12_Burkholderiales_67_14_curated
S15_scaffold_238_curated_8
Thauera linaloolentis, Thauera, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6427..7041
DNA (615bp) protein (205aa)
Type 12 methyltransferase n=1 Tax=Thauera linaloolentis 47Lol = DSM 12138 RepID=N6XQI8_9RHOO
Type 12 methyltransferase {ECO:0000313|EMBL:ENO83916.1}; TaxID=1123367 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Thauera.;" source="Thauera linaloolentis 47Lol = DSM 12138.;"
Methyltransferase type 11
S15_scaffold_238_curated_9
Acidovorax temperans, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7076..7990
DNA (915bp) protein (305aa)
Phosphoribosylaminoimidazole-succinocarboxamide synthase {ECO:0000256|HAMAP-Rule:MF_00137, ECO:0000256|SAAS:SAAS00194445}; EC=6.3.2.6 {ECO:0000256|HAMAP-Rule:MF_00137, ECO:0000256|SAAS:SAAS00194458};; SAICAR synthetase {ECO:0000256|HAMAP-Rule:MF_00137}; TaxID=80878 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax temperans.;"
phosphoribosylaminoimidazole succinocarboxamide synthase (EC:6.3.2.6) rbh
phosphoribosylaminoimidazole-succinocarboxamide synthase n=1 Tax=Acidovorax radicis RepID=UPI0002378699 rbh
S15_scaffold_238_curated_10
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7993..9714)
DNA (1722bp) protein (574aa)
hypothetical protein n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI0003821A31 rbh
PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase rbh
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
S15_scaffold_238_curated_11
R_Burkholderiales_64_960, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9716..11263)
DNA (1548bp) protein (516aa)
hypothetical protein n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI0003748E8C rbh
Pas/Pac sensor-containing methyl-accepting chemotaxis sensory transducer rbh
Tax=RIFCSPHIGHO2_01_FULL_Burkholderiales_64_960_curated
S15_scaffold_238_curated_12
Acidovorax ebreus, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11483..12199)
DNA (717bp) protein (239aa)
Cyclic nucleotide-binding protein n=1 Tax=Acidovorax ebreus (strain TPSY) RepID=B9MF11_ACIET
cyclic nucleotide-binding protein
Cyclic nucleotide-binding protein {ECO:0000313|EMBL:ACM34281.1}; TaxID=535289 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax ebreus (strain TPSY) (Diaphorobacter sp. (strain TPSY)).;"
S15_scaffold_238_curated_13
R_Burkholderiales_67_14, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12366..13133)
DNA (768bp) protein (256aa)
Uncharacterized protein n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MUS6_9BURK
Mn2+dependent serine/threonine protein kinase
Tax=RifCSPlowO2_12_Burkholderiales_67_14_curated
S15_scaffold_238_curated_14
BJP_08E140C01_10KDA_Burkholderiales_65_51, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13205..14329
DNA (1125bp) protein (375aa)
nemA; N-ethylmaleimide reductase (EC:1.-.-.-) rbh
hypothetical protein n=1 Tax=Limnohabitans sp. Rim47 RepID=UPI0002E77662 rbh
Tax=BJP_08E140C01_10KDA_Burkholderiales_65_51
S15_scaffold_238_curated_15
Acidovorax sp. KKS102, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14330..15496)
DNA (1167bp) protein (389aa)
G-D-S-L family lipolytic protein n=1 Tax=Acidovorax sp. KKS102 RepID=K0HYI1_9BURK rbh
G-D-S-L family lipolytic protein rbh
G-D-S-L family lipolytic protein {ECO:0000313|EMBL:AFU48198.1}; TaxID=358220 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. KKS102.;"
S15_scaffold_238_curated_16
unknown

Not on your lists

comp(15591..15881)
DNA (291bp) protein (97aa)

This feature has no annotations

S15_scaffold_238_curated_17
RLO_Burkholderiales_64_33, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15933..16550
DNA (618bp) protein (206aa)
ABC transporter n=1 Tax=Acidovorax radicis RepID=UPI0002377B9D
ABC transporter-like protein
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_64_33_curated
S15_scaffold_238_curated_18
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16538..17866)
DNA (1329bp) protein (443aa)
L-glutamine synthetase (EC:6.3.1.2); K01915 glutamine synthetase [EC:6.3.1.2] id=5081571 bin=GWF1_Burkholderiales_GWF1_66_17 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD rbh
L-glutamine synthetase (EC:6.3.1.2) rbh
Tax=GWE1_Burkholderiales_65_30_curated
S15_scaffold_238_curated_19
Hydrogenophaga sp. PBC, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17871..19358)
DNA (1488bp) protein (496aa)
Aldehyde dehydrogenase {ECO:0000313|EMBL:EIK92969.1}; EC=1.2.1.8 {ECO:0000313|EMBL:EIK92969.1};; TaxID=795665 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. PBC.;"
aldehyde dehydrogenase (EC:1.2.1.3) rbh
Aldehyde dehydrogenase n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MUS9_9BURK rbh
S15_scaffold_238_curated_20
BJP_08E140C01_10KDA_Burkholderiales_65_51, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19509..20798)
DNA (1290bp) protein (430aa)
Uncharacterized protein n=1 Tax=Rubrivivax benzoatilyticus JA2 = ATCC BAA-35 RepID=F3LPW1_9BURK rbh
hypothetical protein rbh
Tax=BJP_08E140C01_10KDA_Burkholderiales_65_51
S15_scaffold_238_curated_21
BJP_08E140C01_10KDA_Burkholderiales_65_51, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20830..21684)
DNA (855bp) protein (285aa)
ABC-type spermidine/putrescine transport system, permease component II n=1 Tax=Burkholderiales bacterium JOSHI_001 RepID=H5WLZ6_9BURK rbh
putrescine transport system permease rbh
Tax=BJP_08E140C01_10KDA_Burkholderiales_65_51
S15_scaffold_238_curated_22
BJP_08E140C01_10KDA_Burkholderiales_65_51, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21681..22604)
DNA (924bp) protein (308aa)
Putrescine ABC transporter permease PotH n=1 Tax=Rubrivivax gelatinosus (strain NBRC 100245 / IL144) RepID=I0HSI1_RUBGI rbh
potH; putrescine ABC transporter permease PotH rbh
Tax=BJP_08E140C01_10KDA_Burkholderiales_65_51
S15_scaffold_238_curated_23
BJP_08E140C01_10KDA_Burkholderiales_65_51, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22613..23773)
DNA (1161bp) protein (387aa)
Putrescine transport ATP-binding protein PotG n=1 Tax=Janthinobacterium sp. HH01 RepID=L9PJM9_9BURK rbh
polyamine ABC transporter, ATP-binding family protein
Tax=BJP_08E140C01_10KDA_Burkholderiales_65_51
S15_scaffold_238_curated_24
BJP_08E140C01_10KDA_Burkholderiales_65_51, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23922..25043)
DNA (1122bp) protein (374aa)
Putrescine-binding periplasmic protein n=1 Tax=Rubrivivax benzoatilyticus JA2 = ATCC BAA-35 RepID=F3LPV7_9BURK rbh
potF; putrescine ABC transporter substrate-binding protein PotF rbh
Tax=BJP_08E140C01_10KDA_Burkholderiales_65_51
S15_scaffold_238_curated_25
R_Burkholderiales_67_14, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25165..26577)
DNA (1413bp) protein (471aa)
putative aminotransferase; K12256 putrescine aminotransferase [EC:2.6.1.-] id=5081564 bin=GWF1_Burkholderiales_GWF1_66_17 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD rbh
putative aminotransferase rbh
Tax=RifCSPlowO2_12_Burkholderiales_67_14_curated
S15_scaffold_238_curated_26
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26612..27982)
DNA (1371bp) protein (457aa)
glutamate--ammonia ligase (EC:6.3.1.2) rbh
Glutamate--ammonia ligase id=1279013 bin=GWE1_Burkholderiales_65_30 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_Burkholderiales_65_30 organism_group=Betaproteobacteria rbh
Tax=GWE1_Burkholderiales_65_30_curated
S15_scaffold_238_curated_27
R_Burkholderiales_67_14, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28024..28809)
DNA (786bp) protein (262aa)
Peptidase C26 n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MUT7_9BURK rbh
predicted glutamine amidotransferase
Tax=RifCSPlowO2_12_Burkholderiales_67_14_curated
S15_scaffold_238_curated_28
BJP_08E140C01_10KDA_Burkholderiales_65_51, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28944..30410
DNA (1467bp) protein (489aa)
GntR family transcriptional regulator id=1279015 bin=GWE1_Burkholderiales_65_30 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_Burkholderiales_65_30 organism_group=Betaproteobacteria rbh
GntR family transcriptional regulator rbh
Tax=BJP_08E140C01_10KDA_Burkholderiales_65_51
S15_scaffold_238_curated_29
R_Burkholderiales_67_14, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30441..31760)
DNA (1320bp) protein (440aa)
FAD dependent oxidoreductase; K09471 gamma-glutamylputrescine oxidase [EC:1.4.3.-] id=5081556 bin=GWF1_Burkholderiales_GWF1_66_17 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD rbh
glycine/D-amino acid oxidase (deaminating)
Tax=RifCSPlowO2_12_Burkholderiales_67_14_curated
S15_scaffold_238_curated_30
Hydrogenophaga sp. PBC, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31764..32714)
DNA (951bp) protein (317aa)
Agmatinase {ECO:0000313|EMBL:EIK92980.1}; EC=3.5.3.11 {ECO:0000313|EMBL:EIK92980.1};; TaxID=795665 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. PBC.;"
Agmatinase n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MUU0_9BURK rbh
arginase/agmatinase/formimionoglutamate hydrolase, arginase family
Displaying items 1-30 of 73 in total

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