name | lists | location/seqs | annotations | notes |
---|---|---|---|---|
S15_scaffold_53_curated_1
Hydrogenophaga sp. PBC, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(2..226)
|
Tripartite ATP-independent periplasmic transporter DctQ n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MIX5_9BURK
Tripartite ATP-independent periplasmic transporter DctQ {ECO:0000313|EMBL:EIK89165.1}; TaxID=795665 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. PBC.;"
tripartite ATP-independent periplasmic transporter DctQ
|
|
S15_scaffold_53_curated_2
Hydrogenophaga sp. PBC, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(338..1306)
|
TRAP dicarboxylate transporter subunit DctP n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MIX6_9BURK
rbh
TRAP dicarboxylate transporter subunit DctP {ECO:0000313|EMBL:EIK89166.1}; TaxID=795665 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. PBC.;"
TRAP dicarboxylate transporter subunit DctP
rbh
|
|
S15_scaffold_53_curated_3
Hydrogenophaga sp. PBC, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(1367..2392)
|
NAD-dependent epimerase/dehydratase n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MIX7_9BURK
rbh
NAD-dependent epimerase/dehydratase {ECO:0000313|EMBL:EIK89167.1}; TaxID=795665 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. PBC.;"
NAD-dependent epimerase/dehydratase
rbh
|
|
S15_scaffold_53_curated_4
Hydrogenophaga sp. PBC, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(2389..3195)
|
Hydroxypyruvate isomerase {ECO:0000256|PIRNR:PIRNR006241}; EC=5.3.1.22 {ECO:0000256|PIRNR:PIRNR006241};; TaxID=795665 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. PBC.;"
Hydroxypyruvate isomerase n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MIX8_9BURK
rbh
hydroxypyruvate isomerase
rbh
|
|
S15_scaffold_53_curated_5
Hydrogenophaga sp. PBC, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(3219..3899)
|
Class II aldolase/adducin family protein n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MIX9_9BURK
rbh
Class II aldolase/adducin family protein {ECO:0000313|EMBL:EIK89169.1}; TaxID=795665 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. PBC.;"
class II aldolase/adducin family protein
rbh
|
|
S15_scaffold_53_curated_6
Hydrogenophaga sp. PBC, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(3896..5170)
|
Type III effector Hrp-dependent outer protein n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MIY0_9BURK
rbh
Type III effector Hrp-dependent outer protein {ECO:0000313|EMBL:EIK89170.1}; TaxID=795665 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. PBC.;"
Hrp-dependent type III effector protein
rbh
|
|
S15_scaffold_53_curated_7
Hydrogenophaga sp. PBC, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(5167..6087)
|
3-hydroxyisobutyrate dehydrogenase {ECO:0000313|EMBL:EIK89171.1}; EC=1.1.1.31 {ECO:0000313|EMBL:EIK89171.1};; TaxID=795665 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. PBC.;"
3-hydroxyisobutyrate dehydrogenase n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MIY1_9BURK
rbh
mmsB; 3-hydroxyisobutyrate dehydrogenase
rbh
|
|
S15_scaffold_53_curated_8
Hydrogenophaga sp. PBC, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(6084..6863)
|
GntR family transcriptional regulator n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MIY2_9BURK
rbh
GntR family transcriptional regulator {ECO:0000313|EMBL:EIK89172.1}; TaxID=795665 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. PBC.;"
Transcriptional regulator PhnF
|
|
S15_scaffold_53_curated_9
Hydrogenophaga sp. PBC, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(6984..7838)
|
Uncharacterized protein n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MIY3_9BURK
rbh
Uncharacterized protein {ECO:0000313|EMBL:EIK89173.1}; TaxID=795665 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. PBC.;"
hypothetical protein
rbh
|
|
S15_scaffold_53_curated_10
Acidovorax delafieldii, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(7868..9040)
|
Diguanylate cyclase n=1 Tax=Acidovorax delafieldii 2AN RepID=C5T1B3_ACIDE
rbh
Diguanylate cyclase {ECO:0000313|EMBL:EER61760.1}; TaxID=573060 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax delafieldii 2AN.;"
diguanylate cyclase
rbh
|
|
S15_scaffold_53_curated_11
Hydrogenophaga sp. PBC, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(9185..11239)
|
K(+)-insensitive pyrophosphate-energized proton pump {ECO:0000256|HAMAP-Rule:MF_01129}; EC=3.6.1.1 {ECO:0000256|HAMAP-Rule:MF_01129};; Membrane-bound proton-translocating pyrophosphatase {ECO:0000256|HAMAP-Rule:MF_01129}; Pyrophosphate-energized inorganic pyrophosphatase {ECO:0000256|HAMAP-Rule:MF_01129}; TaxID=795665 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. PBC.;"
hppA; membrane-bound proton-translocating pyrophosphatase (EC:3.6.1.1)
rbh
K(+)-insensitive pyrophosphate-energized proton pump n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MKE8_9BURK
rbh
|
|
S15_scaffold_53_curated_12
R_Burkholderiales_67_14, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
11508..12047
|
inorganic diphosphatase (EC:3.6.1.1)
rbh
Inorganic pyrophosphatase id=1269708 bin=GWE1_Burkholderiales_65_30 species=Hylemonella gracilis genus=Hylemonella taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_Burkholderiales_65_30 organism_group=Betaproteobacteria
rbh
Tax=RifCSPlowO2_12_Burkholderiales_67_14_curated
|
|
S15_scaffold_53_curated_13
Hydrogenophaga sp. PBC, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(12156..12935)
|
Peptidylprolyl isomerase {ECO:0000256|SAAS:SAAS00143148}; EC=5.2.1.8 {ECO:0000256|SAAS:SAAS00143148};; TaxID=795665 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. PBC.;"
PpiC-type peptidyl-prolyl cis-trans isomerase n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MLM1_9BURK
rbh
peptidylprolyl isomerase
rbh
|
|
S15_scaffold_53_curated_14
Hydrogenophaga sp. PBC, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(12994..13296)
|
Uncharacterized protein in cobS 5'region n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MLM0_9BURK
Uncharacterized protein in cobS 5'region {ECO:0000313|EMBL:EIK90110.1}; TaxID=795665 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. PBC.;"
transcriptional regulator BolA
|
|
S15_scaffold_53_curated_15
R_Burkholderiales_67_14, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(13289..13849)
|
intracellular septation protein A; K06190 intracellular septation protein id=5081076 bin=GWF1_Burkholderiales_GWF1_66_17 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD
intracellular septation protein A
Tax=RifCSPlowO2_12_Burkholderiales_67_14_curated
|
|
S15_scaffold_53_curated_16
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(13880..14287)
|
msrB; peptide methionine sulfoxide reductase (protein-methionine-S-oxide reductase); K07305 peptide-methionine (R)-S-oxide reductase [EC:1.8.4.12] id=5082149 bin=GWF1_Burkholderiales_GWF1_66_17 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD
methionine-R-sulfoxide reductase
Tax=GWE1_Burkholderiales_65_30_curated
|
|
S15_scaffold_53_curated_17
GWA2_Curvibacter_64_110_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(14308..15777)
|
hypothetical protein
rbh
Tax=GWA2_Curvibacter_64_110_curated
|
|
S15_scaffold_53_curated_18
R_Burkholderiales_67_14, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
15902..17545
|
Long-chain-fatty-acid--CoA ligase id=1268609 bin=GWE1_Burkholderiales_65_30 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_Burkholderiales_65_30 organism_group=Betaproteobacteria
rbh
long-chain-fatty-acid--CoA ligase
rbh
Tax=RifCSPlowO2_12_Burkholderiales_67_14_curated
|
|
S15_scaffold_53_curated_19
R_Burkholderiales_67_14, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
17545..18870
|
Extracellular ligand-binding receptor id=1268608 bin=GWE1_Burkholderiales_65_30 species=Albidiferax ferrireducens genus=Albidiferax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_Burkholderiales_65_30 organism_group=Betaproteobacteria
rbh
extracellular ligand-binding receptor
rbh
Tax=RifCSPlowO2_12_Burkholderiales_67_14_curated
|
|
S15_scaffold_53_curated_20
Betaproteobacteria bacterium MOLA814, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
18872..19759
|
LIV-I protein H n=1 Tax=Betaproteobacteria bacterium MOLA814 RepID=V5ADZ0_9PROT
rbh
LIV-I protein H {ECO:0000313|EMBL:ESS13890.1}; TaxID=1408164 species="Bacteria; Proteobacteria; Betaproteobacteria.;" source="Betaproteobacteria bacterium MOLA814.;"
inner-membrane translocator
rbh
|
|
S15_scaffold_53_curated_21
CG_Rhodof_02, Rhodoferax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
19763..20974
|
Inner-membrane translocator n=1 Tax=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) RepID=Q21VU7_RHOFD
rbh
inner-membrane translocator
rbh
Tax=CG_Rhodof_02
|
|
S15_scaffold_53_curated_22
Leptothrix cholodnii, Leptothrix, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
20971..21732
|
ABC transporter-related protein n=1 Tax=Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) RepID=B1XZZ2_LEPCP
ABC transporter-like protein
ABC transporter-related protein {ECO:0000313|EMBL:ACB34119.1}; TaxID=395495 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Leptothrix.;" source="Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) (Leptothrix; discophora (strain SP-6)).;"
|
|
S15_scaffold_53_curated_23
Rubrivivax gelatinosus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
21729..22436
|
ABC transporter ATP-binding protein LivF n=1 Tax=Rubrivivax gelatinosus (strain NBRC 100245 / IL144) RepID=I0HRY9_RUBGI
livF; ABC transporter ATP-binding protein LivF
ABC transporter ATP-binding protein LivF {ECO:0000313|EMBL:BAL95776.1}; TaxID=983917 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Rubrivivax.;" source="Rubrivivax gelatinosus (strain NBRC 100245 / IL144).;"
|
|
S15_scaffold_53_curated_24
Acidovorax delafieldii, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
22548..24647
|
3-hydroxyacyl-CoA dehydrogenase NAD-binding n=1 Tax=Acidovorax delafieldii 2AN RepID=C5T2P5_ACIDE
rbh
3-hydroxyacyl-CoA dehydrogenase NAD-binding {ECO:0000313|EMBL:EER61228.1}; TaxID=573060 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax delafieldii 2AN.;"
3-hydroxyacyl-CoA dehydrogenase
rbh
|
|
S15_scaffold_53_curated_25
R_Burkholderiales_67_14, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
24679..25854
|
acetyL-CoA acetyltransferase (EC:2.3.1.16); K00626 acetyl-CoA C-acetyltransferase [EC:2.3.1.9] id=5082139 bin=GWF1_Burkholderiales_GWF1_66_17 species=unknown genus=Variovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD
rbh
acetyL-CoA acetyltransferase (EC:2.3.1.16)
rbh
Tax=RifCSPlowO2_12_Burkholderiales_67_14_curated
|
|
S15_scaffold_53_curated_26
BJP_08E140C01_Burkholderiales_65_30, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(25943..27175)
|
carboxymethylenebutenolidase (dienelactone hydrolase) (dlh) (EC:3.1.1.45)
rbh
Carboxymethylenebutenolidase (Dienelactone hydrolase) (Dlh) n=1 Tax=Cupriavidus basilensis OR16 RepID=H1SAE6_9BURK
rbh
Tax=BJP_08E140C01_Burkholderiales_65_30
|
|
S15_scaffold_53_curated_27
BJP_08E140C01_Burkholderiales_65_30, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(27172..27729)
|
hypothetical protein n=1 Tax=Arhodomonas aquaeolei RepID=UPI00035F03DF
oxidoreductase
Tax=BJP_08E140C01_Burkholderiales_65_30
|
|
S15_scaffold_53_curated_28
BJP_08E140C01_Burkholderiales_65_30, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(27726..28958)
|
hypothetical protein n=1 Tax=Martelella mediterranea RepID=UPI00037F7DFB
rbh
oxygenase, StyA1-like protein
rbh
Tax=BJP_08E140C01_Burkholderiales_65_30
|
|
S15_scaffold_53_curated_29
BJP_08E140C01_Burkholderiales_65_30, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(28992..29795)
|
short-chain dehydrogenase n=1 Tax=Variovorax paradoxus RepID=UPI0003758F88
rbh
putative oxidoreductase, SDR family
rbh
Tax=BJP_08E140C01_Burkholderiales_65_30
|
|
S15_scaffold_53_curated_30
BJP_08E140C01_Burkholderiales_65_30, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
29992..31023
|
Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain n=1 Tax=Variovorax sp. CF313 RepID=J2KFJ2_9BURK
rbh
AraC family transcriptional regulator
rbh
Tax=BJP_08E140C01_Burkholderiales_65_30
|