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S15_scaffold_53_curated

Search features with annotation key words

Displaying items 1-30 of 275 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
S15_scaffold_53_curated_1
Hydrogenophaga sp. PBC, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2..226)
DNA (225bp) protein (75aa)
Tripartite ATP-independent periplasmic transporter DctQ n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MIX5_9BURK
Tripartite ATP-independent periplasmic transporter DctQ {ECO:0000313|EMBL:EIK89165.1}; TaxID=795665 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. PBC.;"
tripartite ATP-independent periplasmic transporter DctQ
S15_scaffold_53_curated_2
Hydrogenophaga sp. PBC, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(338..1306)
DNA (969bp) protein (323aa)
TRAP dicarboxylate transporter subunit DctP n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MIX6_9BURK rbh
TRAP dicarboxylate transporter subunit DctP {ECO:0000313|EMBL:EIK89166.1}; TaxID=795665 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. PBC.;"
TRAP dicarboxylate transporter subunit DctP rbh
S15_scaffold_53_curated_3
Hydrogenophaga sp. PBC, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1367..2392)
DNA (1026bp) protein (342aa)
NAD-dependent epimerase/dehydratase n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MIX7_9BURK rbh
NAD-dependent epimerase/dehydratase {ECO:0000313|EMBL:EIK89167.1}; TaxID=795665 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. PBC.;"
NAD-dependent epimerase/dehydratase rbh
S15_scaffold_53_curated_4
Hydrogenophaga sp. PBC, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2389..3195)
DNA (807bp) protein (269aa)
Hydroxypyruvate isomerase {ECO:0000256|PIRNR:PIRNR006241}; EC=5.3.1.22 {ECO:0000256|PIRNR:PIRNR006241};; TaxID=795665 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. PBC.;"
Hydroxypyruvate isomerase n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MIX8_9BURK rbh
hydroxypyruvate isomerase rbh
S15_scaffold_53_curated_5
Hydrogenophaga sp. PBC, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3219..3899)
DNA (681bp) protein (227aa)
Class II aldolase/adducin family protein n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MIX9_9BURK rbh
Class II aldolase/adducin family protein {ECO:0000313|EMBL:EIK89169.1}; TaxID=795665 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. PBC.;"
class II aldolase/adducin family protein rbh
S15_scaffold_53_curated_6
Hydrogenophaga sp. PBC, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3896..5170)
DNA (1275bp) protein (425aa)
Type III effector Hrp-dependent outer protein n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MIY0_9BURK rbh
Type III effector Hrp-dependent outer protein {ECO:0000313|EMBL:EIK89170.1}; TaxID=795665 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. PBC.;"
Hrp-dependent type III effector protein rbh
S15_scaffold_53_curated_7
Hydrogenophaga sp. PBC, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5167..6087)
DNA (921bp) protein (307aa)
3-hydroxyisobutyrate dehydrogenase {ECO:0000313|EMBL:EIK89171.1}; EC=1.1.1.31 {ECO:0000313|EMBL:EIK89171.1};; TaxID=795665 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. PBC.;"
3-hydroxyisobutyrate dehydrogenase n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MIY1_9BURK rbh
mmsB; 3-hydroxyisobutyrate dehydrogenase rbh
S15_scaffold_53_curated_8
Hydrogenophaga sp. PBC, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6084..6863)
DNA (780bp) protein (260aa)
GntR family transcriptional regulator n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MIY2_9BURK rbh
GntR family transcriptional regulator {ECO:0000313|EMBL:EIK89172.1}; TaxID=795665 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. PBC.;"
Transcriptional regulator PhnF
S15_scaffold_53_curated_9
Hydrogenophaga sp. PBC, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6984..7838)
DNA (855bp) protein (285aa)
Uncharacterized protein n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MIY3_9BURK rbh
Uncharacterized protein {ECO:0000313|EMBL:EIK89173.1}; TaxID=795665 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. PBC.;"
hypothetical protein rbh
S15_scaffold_53_curated_10
Acidovorax delafieldii, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7868..9040)
DNA (1173bp) protein (391aa)
Diguanylate cyclase n=1 Tax=Acidovorax delafieldii 2AN RepID=C5T1B3_ACIDE rbh
Diguanylate cyclase {ECO:0000313|EMBL:EER61760.1}; TaxID=573060 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax delafieldii 2AN.;"
diguanylate cyclase rbh
S15_scaffold_53_curated_11
Hydrogenophaga sp. PBC, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9185..11239)
DNA (2055bp) protein (685aa)
K(+)-insensitive pyrophosphate-energized proton pump {ECO:0000256|HAMAP-Rule:MF_01129}; EC=3.6.1.1 {ECO:0000256|HAMAP-Rule:MF_01129};; Membrane-bound proton-translocating pyrophosphatase {ECO:0000256|HAMAP-Rule:MF_01129}; Pyrophosphate-energized inorganic pyrophosphatase {ECO:0000256|HAMAP-Rule:MF_01129}; TaxID=795665 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. PBC.;"
hppA; membrane-bound proton-translocating pyrophosphatase (EC:3.6.1.1) rbh
K(+)-insensitive pyrophosphate-energized proton pump n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MKE8_9BURK rbh
S15_scaffold_53_curated_12
R_Burkholderiales_67_14, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11508..12047
DNA (540bp) protein (180aa)
inorganic diphosphatase (EC:3.6.1.1) rbh
Inorganic pyrophosphatase id=1269708 bin=GWE1_Burkholderiales_65_30 species=Hylemonella gracilis genus=Hylemonella taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_Burkholderiales_65_30 organism_group=Betaproteobacteria rbh
Tax=RifCSPlowO2_12_Burkholderiales_67_14_curated
S15_scaffold_53_curated_13
Hydrogenophaga sp. PBC, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12156..12935)
DNA (780bp) protein (260aa)
Peptidylprolyl isomerase {ECO:0000256|SAAS:SAAS00143148}; EC=5.2.1.8 {ECO:0000256|SAAS:SAAS00143148};; TaxID=795665 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. PBC.;"
PpiC-type peptidyl-prolyl cis-trans isomerase n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MLM1_9BURK rbh
peptidylprolyl isomerase rbh
S15_scaffold_53_curated_14
Hydrogenophaga sp. PBC, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12994..13296)
DNA (303bp) protein (101aa)
Uncharacterized protein in cobS 5'region n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MLM0_9BURK
Uncharacterized protein in cobS 5'region {ECO:0000313|EMBL:EIK90110.1}; TaxID=795665 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. PBC.;"
transcriptional regulator BolA
S15_scaffold_53_curated_15
R_Burkholderiales_67_14, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13289..13849)
DNA (561bp) protein (187aa)
intracellular septation protein A; K06190 intracellular septation protein id=5081076 bin=GWF1_Burkholderiales_GWF1_66_17 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD
intracellular septation protein A
Tax=RifCSPlowO2_12_Burkholderiales_67_14_curated
S15_scaffold_53_curated_16
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13880..14287)
DNA (408bp) protein (136aa)
msrB; peptide methionine sulfoxide reductase (protein-methionine-S-oxide reductase); K07305 peptide-methionine (R)-S-oxide reductase [EC:1.8.4.12] id=5082149 bin=GWF1_Burkholderiales_GWF1_66_17 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD
methionine-R-sulfoxide reductase
Tax=GWE1_Burkholderiales_65_30_curated
S15_scaffold_53_curated_17
GWA2_Curvibacter_64_110_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14308..15777)
DNA (1470bp) protein (490aa)
UPF0061 protein PMI15_04590 n=1 Tax=Polaromonas sp. CF318 RepID=J3CST3_9BURK rbh
hypothetical protein rbh
Tax=GWA2_Curvibacter_64_110_curated
S15_scaffold_53_curated_18
R_Burkholderiales_67_14, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15902..17545
DNA (1644bp) protein (548aa)
Long-chain-fatty-acid--CoA ligase id=1268609 bin=GWE1_Burkholderiales_65_30 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_Burkholderiales_65_30 organism_group=Betaproteobacteria rbh
long-chain-fatty-acid--CoA ligase rbh
Tax=RifCSPlowO2_12_Burkholderiales_67_14_curated
S15_scaffold_53_curated_19
R_Burkholderiales_67_14, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17545..18870
DNA (1326bp) protein (442aa)
Extracellular ligand-binding receptor id=1268608 bin=GWE1_Burkholderiales_65_30 species=Albidiferax ferrireducens genus=Albidiferax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_Burkholderiales_65_30 organism_group=Betaproteobacteria rbh
extracellular ligand-binding receptor rbh
Tax=RifCSPlowO2_12_Burkholderiales_67_14_curated
S15_scaffold_53_curated_20
Betaproteobacteria bacterium MOLA814, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18872..19759
DNA (888bp) protein (296aa)
LIV-I protein H n=1 Tax=Betaproteobacteria bacterium MOLA814 RepID=V5ADZ0_9PROT rbh
LIV-I protein H {ECO:0000313|EMBL:ESS13890.1}; TaxID=1408164 species="Bacteria; Proteobacteria; Betaproteobacteria.;" source="Betaproteobacteria bacterium MOLA814.;"
inner-membrane translocator rbh
S15_scaffold_53_curated_21
CG_Rhodof_02, Rhodoferax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19763..20974
DNA (1212bp) protein (404aa)
Inner-membrane translocator n=1 Tax=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) RepID=Q21VU7_RHOFD rbh
inner-membrane translocator rbh
Tax=CG_Rhodof_02
S15_scaffold_53_curated_22
Leptothrix cholodnii, Leptothrix, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20971..21732
DNA (762bp) protein (254aa)
ABC transporter-related protein n=1 Tax=Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) RepID=B1XZZ2_LEPCP
ABC transporter-like protein
ABC transporter-related protein {ECO:0000313|EMBL:ACB34119.1}; TaxID=395495 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Leptothrix.;" source="Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) (Leptothrix; discophora (strain SP-6)).;"
S15_scaffold_53_curated_23
Rubrivivax gelatinosus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21729..22436
DNA (708bp) protein (236aa)
ABC transporter ATP-binding protein LivF n=1 Tax=Rubrivivax gelatinosus (strain NBRC 100245 / IL144) RepID=I0HRY9_RUBGI
livF; ABC transporter ATP-binding protein LivF
ABC transporter ATP-binding protein LivF {ECO:0000313|EMBL:BAL95776.1}; TaxID=983917 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Rubrivivax.;" source="Rubrivivax gelatinosus (strain NBRC 100245 / IL144).;"
S15_scaffold_53_curated_24
Acidovorax delafieldii, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22548..24647
DNA (2100bp) protein (700aa)
3-hydroxyacyl-CoA dehydrogenase NAD-binding n=1 Tax=Acidovorax delafieldii 2AN RepID=C5T2P5_ACIDE rbh
3-hydroxyacyl-CoA dehydrogenase NAD-binding {ECO:0000313|EMBL:EER61228.1}; TaxID=573060 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax delafieldii 2AN.;"
3-hydroxyacyl-CoA dehydrogenase rbh
S15_scaffold_53_curated_25
R_Burkholderiales_67_14, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24679..25854
DNA (1176bp) protein (392aa)
acetyL-CoA acetyltransferase (EC:2.3.1.16); K00626 acetyl-CoA C-acetyltransferase [EC:2.3.1.9] id=5082139 bin=GWF1_Burkholderiales_GWF1_66_17 species=unknown genus=Variovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD rbh
acetyL-CoA acetyltransferase (EC:2.3.1.16) rbh
Tax=RifCSPlowO2_12_Burkholderiales_67_14_curated
S15_scaffold_53_curated_26
BJP_08E140C01_Burkholderiales_65_30, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25943..27175)
DNA (1233bp) protein (411aa)
carboxymethylenebutenolidase (dienelactone hydrolase) (dlh) (EC:3.1.1.45) rbh
Carboxymethylenebutenolidase (Dienelactone hydrolase) (Dlh) n=1 Tax=Cupriavidus basilensis OR16 RepID=H1SAE6_9BURK rbh
Tax=BJP_08E140C01_Burkholderiales_65_30
S15_scaffold_53_curated_27
BJP_08E140C01_Burkholderiales_65_30, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27172..27729)
DNA (558bp) protein (186aa)
hypothetical protein n=1 Tax=Arhodomonas aquaeolei RepID=UPI00035F03DF
oxidoreductase
Tax=BJP_08E140C01_Burkholderiales_65_30
S15_scaffold_53_curated_28
BJP_08E140C01_Burkholderiales_65_30, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27726..28958)
DNA (1233bp) protein (411aa)
hypothetical protein n=1 Tax=Martelella mediterranea RepID=UPI00037F7DFB rbh
oxygenase, StyA1-like protein rbh
Tax=BJP_08E140C01_Burkholderiales_65_30
S15_scaffold_53_curated_29
BJP_08E140C01_Burkholderiales_65_30, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28992..29795)
DNA (804bp) protein (268aa)
short-chain dehydrogenase n=1 Tax=Variovorax paradoxus RepID=UPI0003758F88 rbh
putative oxidoreductase, SDR family rbh
Tax=BJP_08E140C01_Burkholderiales_65_30
S15_scaffold_53_curated_30
BJP_08E140C01_Burkholderiales_65_30, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29992..31023
DNA (1032bp) protein (344aa)
Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain n=1 Tax=Variovorax sp. CF313 RepID=J2KFJ2_9BURK rbh
AraC family transcriptional regulator rbh
Tax=BJP_08E140C01_Burkholderiales_65_30
Displaying items 1-30 of 275 in total

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