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S15_scaffold_278_curated

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Displaying items 1-30 of 45 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
S15_scaffold_278_curated_1
Polaromonas sp. JS666, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(70..1074)
DNA (1005bp) protein (335aa)
Uncharacterized protein UPF0065 n=1 Tax=Polaromonas sp. (strain JS666 / ATCC BAA-500) RepID=Q12FY6_POLSJ rbh
hypothetical protein rbh
Uncharacterized protein UPF0065 {ECO:0000313|EMBL:ABE42556.1}; Flags: Precursor;; TaxID=296591 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas sp. (strain JS666 / ATCC BAA-500).;"
S15_scaffold_278_curated_2
R_Burkholderiales_67_14, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1217..2200)
DNA (984bp) protein (328aa)
Uncharacterized protein id=1270772 bin=GWE1_Burkholderiales_65_30 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_Burkholderiales_65_30 organism_group=Betaproteobacteria rbh
hypothetical protein rbh
Tax=RifCSPlowO2_12_Burkholderiales_67_14_curated
S15_scaffold_278_curated_3
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2363..3778)
DNA (1416bp) protein (472aa)
Uncharacterized protein n=1 Tax=Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC) RepID=E8TZ20_ALIDB rbh
Uncharacterized protein {ECO:0000313|EMBL:GAO23615.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
hypothetical protein rbh
S15_scaffold_278_curated_4
R_Burkholderiales_67_14, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4211..5461)
DNA (1251bp) protein (417aa)
Phenylacetate-coenzyme A ligase id=1270771 bin=GWE1_Burkholderiales_65_30 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_Burkholderiales_65_30 organism_group=Betaproteobacteria rbh
phenylacetate-CoA ligase
Tax=RifCSPlowO2_12_Burkholderiales_67_14_curated
S15_scaffold_278_curated_5
R_Burkholderiales_67_14, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5593..6402)
DNA (810bp) protein (270aa)
ABC transporter related protein id=1270770 bin=GWE1_Burkholderiales_65_30 species=unknown genus=unknown taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_Burkholderiales_65_30 organism_group=Betaproteobacteria rbh
ABC transporter-like protein rbh
Tax=RifCSPlowO2_12_Burkholderiales_67_14_curated
S15_scaffold_278_curated_6
R_Burkholderiales_67_14, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6529..7866)
DNA (1338bp) protein (446aa)
ABC transporter permease n=1 Tax=Limnohabitans sp. Rim47 RepID=UPI0002D72FA0 rbh
putative ABC transporter, substrate-binding protein rbh
Tax=RifCSPlowO2_12_Burkholderiales_67_14_curated
S15_scaffold_278_curated_7
R_Burkholderiales_67_14, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8010..9086)
DNA (1077bp) protein (359aa)
ABC transporter permease n=1 Tax=Limnohabitans sp. Rim47 RepID=UPI0002E2FF2C rbh
inner-membrane translocator rbh
Tax=RifCSPlowO2_12_Burkholderiales_67_14_curated
S15_scaffold_278_curated_8
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9098..10027)
DNA (930bp) protein (310aa)
Putative ABC transporter, permease protein n=1 Tax=Variovorax paradoxus B4 RepID=T1XI94_VARPD rbh
putative ABC transporter, permease protein rbh
Putative ABC transporter, permease protein {ECO:0000313|EMBL:AGU52251.1}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus B4.;"
S15_scaffold_278_curated_9
R_Burkholderiales_67_14, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10038..10832)
DNA (795bp) protein (265aa)
ABC transporter n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MQB7_9BURK rbh
ABC transporter rbh
Tax=RifCSPlowO2_12_Burkholderiales_67_14_curated
S15_scaffold_278_curated_10
R_Burkholderiales_67_14, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10829..12775)
DNA (1947bp) protein (649aa)
AMP-dependent synthetase and ligase; K01897 long-chain acyl-CoA synthetase [EC:6.2.1.3] id=5080670 bin=GWF1_Burkholderiales_GWF1_66_17 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD rbh
AMP-dependent synthetase and ligase rbh
Tax=RifCSPlowO2_12_Burkholderiales_67_14_curated
S15_scaffold_278_curated_11
Polaromonas sp. CF318, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12944..13675
DNA (732bp) protein (244aa)
cAMP-binding protein n=1 Tax=Polaromonas sp. CF318 RepID=J3CRN0_9BURK rbh
cAMP-binding protein {ECO:0000313|EMBL:EJL76851.1}; TaxID=1144318 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas sp. CF318.;"
Crp/FNR family transcriptional regulator rbh
S15_scaffold_278_curated_12
Acidovorax sp. NO-1, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13747..14673
DNA (927bp) protein (309aa)
Putative uncharacterized protein n=1 Tax=Acidovorax sp. NO-1 RepID=H0BYW3_9BURK rbh
Putative uncharacterized protein {ECO:0000313|EMBL:EHL22409.1}; TaxID=512030 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. NO-1.;"
hypothetical protein rbh
S15_scaffold_278_curated_13
R_Curvibacter_63_18, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14670..15290
DNA (621bp) protein (207aa)
Uncharacterized protein n=1 Tax=Acidovorax sp. CF316 RepID=J0KNH6_9BURK
hypothetical protein
Tax=RIFCSPHIGHO2_12_FULL_Curvibacter_63_18_curated
S15_scaffold_278_curated_14
Acidovorax sp. KKS102, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15304..17664
DNA (2361bp) protein (787aa)
Diguanylate cyclase/phosphodiesterase n=1 Tax=Acidovorax sp. KKS102 RepID=K0I5S0_9BURK rbh
diguanylate cyclase/phosphodiesterase rbh
Diguanylate cyclase/phosphodiesterase {ECO:0000313|EMBL:AFU44276.1}; TaxID=358220 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. KKS102.;"
S15_scaffold_278_curated_15
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17674..18696
DNA (1023bp) protein (341aa)
Pseudouridine synthase Rsu id=1270763 bin=GWE1_Burkholderiales_65_30 species=Acidovorax avenae genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_Burkholderiales_65_30 organism_group=Betaproteobacteria rbh
pseudouridine synthase Rsu rbh
Tax=GWE1_Burkholderiales_65_30_curated
S15_scaffold_278_curated_16
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18725..19744
DNA (1020bp) protein (340aa)
Diguanylate cyclase with GAF sensor n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6V1Y0_VARPE rbh
diguanylate cyclase with gaf sensor rbh
Diguanylate cyclase with GAF sensor {ECO:0000313|EMBL:ADU37983.1}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
S15_scaffold_278_curated_17
Microbacterium sp. UCD-TDU, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

19922..21505
DNA (1584bp) protein (528aa)
hypothetical protein n=1 Tax=Microbacterium sp. UCD-TDU RepID=UPI0003494BC8
Uncharacterized protein {ECO:0000313|EMBL:EYT60904.1}; TaxID=1247714 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. UCD-TDU.;"
chromosome condensation regulator RCC1
S15_scaffold_278_curated_18
BJP_08E140C01_Burkholderiales_65_30, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21665..23602
DNA (1938bp) protein (646aa)
Heat shock protein Hsp90; K04079 molecular chaperone HtpG id=5080666 bin=GWF1_Burkholderiales_GWF1_66_17 species=unknown genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD rbh
Heat shock protein Hsp90 rbh
Tax=BJP_08E140C01_Burkholderiales_65_30
S15_scaffold_278_curated_19
Delftia acidovorans, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23583..25253)
DNA (1671bp) protein (557aa)
Uncharacterized protein n=1 Tax=Delftia acidovorans CCUG 274B RepID=S2W8I6_DELAC rbh
Uncharacterized protein {ECO:0000313|EMBL:EPD34520.1}; TaxID=883101 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia acidovorans CCUG 274B.;"
glycosyltransferase rbh
S15_scaffold_278_curated_20
BJP_08E140C01_Burkholderiales_65_30, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25296..27560
DNA (2265bp) protein (755aa)
Cytochrome c biogenesis protein transmembrane subunit id=1300397 bin=GWE1_Burkholderiales_65_30 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_Burkholderiales_65_30 organism_group=Betaproteobacteria rbh
thiol-disulfide interchange protein DsbD-like protein
Tax=BJP_08E140C01_Burkholderiales_65_30
S15_scaffold_278_curated_21
Hydrogenophaga sp. PBC, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27583..28188
DNA (606bp) protein (202aa)
Periplasmic/membrane thiol peroxidase n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MM53_9BURK
Periplasmic/membrane thiol peroxidase {ECO:0000313|EMBL:EIK90293.1}; TaxID=795665 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. PBC.;"
periplasmic/membrane thiol peroxidase
S15_scaffold_278_curated_22
GWA2_Burkholderiales_64_37_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28324..28827
DNA (504bp) protein (168aa)
CoA-binding domain-containing protein n=1 Tax=Acidovorax sp. KKS102 RepID=K0I9R2_9BURK
CoA-binding domain-containing protein
Tax=GWA2_Burkholderiales_64_37_curated
S15_scaffold_278_curated_23
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28832..30151
DNA (1320bp) protein (440aa)
o-acetylhomoserine/o-acetylserine sulfhydrylase (EC:2.5.1.49) rbh
O-acetylhomoserine aminocarboxypropyltransferase n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI000368280F rbh
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
S15_scaffold_278_curated_24
RLO_Burkholderiales_61_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30161..31357)
DNA (1197bp) protein (399aa)
nicotinate phosphoribosyltransferase (EC:2.4.2.11) rbh
Nicotinate phosphoribosyltransferase n=1 Tax=Acidovorax citrulli (strain AAC00-1) RepID=A1TKT6_ACIAC rbh
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_61_40_curated
S15_scaffold_278_curated_25
Hydrogenophaga sp. PBC, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31381..31968)
DNA (588bp) protein (196aa)
Methionine biosynthesis protein MetW n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MQM0_9BURK rbh
Methionine biosynthesis protein MetW {ECO:0000313|EMBL:EIK91510.1}; TaxID=795665 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. PBC.;"
methionine biosynthesis protein MetW rbh
S15_scaffold_278_curated_26
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31965..33233)
DNA (1269bp) protein (423aa)
Homoserine O-acetyltransferase id=1293900 bin=GWE1_Burkholderiales_65_30 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_Burkholderiales_65_30 organism_group=Betaproteobacteria rbh
metX; homoserine acetyltransferase
Tax=GWE1_Burkholderiales_65_30_curated
S15_scaffold_278_curated_27
BJP_08E140C01_10KDA_Burkholderiales_65_51, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

33402..34223
DNA (822bp) protein (274aa)
Putative Formate/nitrite transporter n=1 Tax=Herminiimonas arsenicoxydans RepID=A4G278_HERAR rbh
hypothetical protein rbh
Tax=BJP_08E140C01_10KDA_Burkholderiales_65_51
S15_scaffold_278_curated_28
R_Burkholderiales_67_14, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

34476..34895
DNA (420bp) protein (140aa)
RNA recognition motif-containing protein id=5083681 bin=GWF1_Burkholderiales_GWF1_66_17 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD
RNA-binding protein with RRM domain
Tax=RifCSPlowO2_12_Burkholderiales_67_14_curated
S15_scaffold_278_curated_29
Hydrogenophaga sp. PBC, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(34998..35792)
DNA (795bp) protein (265aa)
Short-chain dehydrogenase/reductase sdr n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MQM3_9BURK rbh
Short-chain dehydrogenase/reductase sdr {ECO:0000313|EMBL:EIK91513.1}; TaxID=795665 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. PBC.;"
short-chain dehydrogenase/reductase SDR rbh
S15_scaffold_278_curated_30
R_Burkholderiales_67_14, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(35789..36412)
DNA (624bp) protein (208aa)
Putative uncharacterized protein n=1 Tax=Acidovorax sp. NO-1 RepID=H0BX15_9BURK
hypothetical protein
Tax=RifCSPlowO2_12_Burkholderiales_67_14_curated
Displaying items 1-30 of 45 in total

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