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S15_scaffold_134_curated

Search features with annotation key words

Displaying items 1-30 of 109 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
S15_scaffold_134_curated_1
Burkholderiales bacterium JOSHI_001, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

199..1128
DNA (930bp) protein (310aa)
Putative uncharacterized protein n=1 Tax=Burkholderiales bacterium JOSHI_001 RepID=H5WJZ7_9BURK
Putative uncharacterized protein {ECO:0000313|EMBL:EHR70969.1}; TaxID=864051 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales.;" source="Burkholderiales bacterium JOSHI_001.;"
hypothetical protein
S15_scaffold_134_curated_2
Acidovorax sp. NO-1, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1125..2468
DNA (1344bp) protein (448aa)
Chromate transporter n=1 Tax=Acidovorax sp. NO-1 RepID=H0C3F4_9BURK
Chromate transporter {ECO:0000313|EMBL:EHL20775.1}; TaxID=512030 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. NO-1.;"
chromate transporter
S15_scaffold_134_curated_3
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2480..3091
DNA (612bp) protein (204aa)
superoxide dismutase n=1 Tax=Variovorax paradoxus RepID=UPI000380A309
manganese and iron superoxide dismutase
Manganese and iron superoxide dismutase {ECO:0000313|EMBL:ACS22347.1}; TaxID=543728 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain S110).;"
S15_scaffold_134_curated_4
Comamonadaceae bacterium A1, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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3223..4572
DNA (1350bp) protein (450aa)
glutamate dehydrogenase n=1 Tax=Azoarcus toluclasticus RepID=UPI0003797A29 rbh
glutamate dehydrogenase/leucine dehydrogenase
Glutamate dehydrogenase {ECO:0000256|PIRNR:PIRNR000185}; TaxID=1458425 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae.;" source="Comamonadaceae bacterium A1.;"
S15_scaffold_134_curated_5
Azospirillum brasilense, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4585..4989)
DNA (405bp) protein (135aa)
Uncharacterized protein n=1 Tax=Azospirillum brasilense Sp245 RepID=G8APW8_AZOBR
conserved hypothetical protein; putative Hit (histidine triad) family protein
Uncharacterized protein {ECO:0000313|EMBL:CCD01291.1}; TaxID=1064539 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum brasilense Sp245.;"
S15_scaffold_134_curated_6
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5040..5882
DNA (843bp) protein (281aa)
Uncharacterized protein id=1262164 bin=GWE1_Burkholderiales_65_30 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_Burkholderiales_65_30 organism_group=Betaproteobacteria rbh
hypothetical protein rbh
Tax=GWE1_Burkholderiales_65_30_curated
S15_scaffold_134_curated_7
R_Burkholderiales_67_14, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6042..7301
DNA (1260bp) protein (420aa)
Bcr/CflA subfamily drug resistance transporter id=1262162 bin=GWE1_Burkholderiales_65_30 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_Burkholderiales_65_30 organism_group=Betaproteobacteria rbh
Bcr/CflA subfamily drug resistance transporter rbh
Tax=RifCSPlowO2_12_Burkholderiales_67_14_curated
S15_scaffold_134_curated_8
GWA2_Curvibacter_64_110_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7298..8245
DNA (948bp) protein (316aa)
tRNA dimethylallyltransferase id=1262161 bin=GWE1_Burkholderiales_65_30 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_Burkholderiales_65_30 organism_group=Betaproteobacteria rbh
tRNA delta(2)-isopentenylpyrophosphate transferase rbh
Tax=GWA2_Curvibacter_64_110_curated
S15_scaffold_134_curated_9
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8238..8897
DNA (660bp) protein (220aa)
ABC transporter related protein n=1 Tax=Polaromonas naphthalenivorans (strain CJ2) RepID=A1VLE2_POLNA
ABC transporter-like protein
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
S15_scaffold_134_curated_10
R_Burkholderiales_67_14, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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8905..10083
DNA (1179bp) protein (393aa)
lytic murein transglycosylase family protein id=5079335 bin=GWF1_Burkholderiales_GWF1_66_17 species=Advenella kashmirensis genus=Advenella taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD rbh
lytic murein transglycosylase rbh
Tax=RifCSPlowO2_12_Burkholderiales_67_14_curated
S15_scaffold_134_curated_11
Thiobacillus prosperus, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10085..10633)
DNA (549bp) protein (183aa)
isochorismatase n=1 Tax=Desulfospira joergensenii RepID=UPI0003B38E6D
Isochorismatase family protein {ECO:0000313|EMBL:KFZ89659.1}; TaxID=160660 species="Bacteria; Proteobacteria; Gammaproteobacteria.;" source="Thiobacillus prosperus.;"
isochorismatase hydrolase
S15_scaffold_134_curated_12
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10633..10977)
DNA (345bp) protein (115aa)
hypothetical protein id=5079332 bin=GWF1_Burkholderiales_GWF1_66_17 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD
hypothetical protein
Tax=GWE1_Burkholderiales_65_30_curated
S15_scaffold_134_curated_13
Stenotrophomonas rhizophila, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11623..13113
DNA (1491bp) protein (497aa)
Uncharacterized protein n=1 Tax=Escherichia coli KTE138 RepID=L4ZYU5_ECOLX
Uncharacterized protein {ECO:0000313|EMBL:AHY58960.1}; TaxID=216778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas rhizophila.;"
hypothetical protein
S15_scaffold_134_curated_14
unknown

Not on your lists

13100..13981
DNA (882bp) protein (294aa)

This feature has no annotations

S15_scaffold_134_curated_15
Hydrogenophaga sp. PBC, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14775..15419)
DNA (645bp) protein (215aa)
ABC transporter-like protein {ECO:0000313|EMBL:EIK88516.1}; EC=3.6.1.3 {ECO:0000313|EMBL:EIK88516.1};; TaxID=795665 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. PBC.;"
ABC transporter-like protein n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MH26_9BURK rbh
ABC transporter-like protein
S15_scaffold_134_curated_16
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15412..16953)
DNA (1542bp) protein (514aa)
binding-protein-dependent transport systems inner membrane component; K02063 thiamine transport system permease protein id=5079330 bin=GWF1_Burkholderiales_GWF1_66_17 species=Albidiferax ferrireducens genus=Albidiferax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD rbh
binding-protein-dependent transport systems inner membrane component rbh
Tax=GWE1_Burkholderiales_65_30_curated
S15_scaffold_134_curated_17
BJP_08E140C01_Burkholderiales_65_30, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17099..18100)
DNA (1002bp) protein (334aa)
Uncharacterized protein id=1274238 bin=GWE1_Burkholderiales_65_30 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_Burkholderiales_65_30 organism_group=Betaproteobacteria rbh
ABC transporter substrate-binding protein rbh
Tax=BJP_08E140C01_Burkholderiales_65_30
S15_scaffold_134_curated_18
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18381..20915
DNA (2535bp) protein (845aa)
Uncharacterized protein (Fragment) id=1274244 bin=GWE1_Burkholderiales_65_30 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_Burkholderiales_65_30 organism_group=Betaproteobacteria rbh
ABC transporter permease rbh
Tax=GWE1_Burkholderiales_65_30_curated
S15_scaffold_134_curated_19
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20947..21993
DNA (1047bp) protein (349aa)
pyridoxal-5'-phosphate-dependent enzyme subunit beta; K01738 cysteine synthase A [EC:2.5.1.47] id=5079322 bin=GWF1_Burkholderiales_GWF1_66_17 species=Acidovorax delafieldii genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD rbh
cysteine synthase (EC:2.5.1.47) rbh
Tax=GWE1_Burkholderiales_65_30_curated
S15_scaffold_134_curated_20
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21995..23068
DNA (1074bp) protein (358aa)
Putative secreted hydrolase n=1 Tax=Variovorax paradoxus B4 RepID=T1XDW2_VARPD rbh
putative secreted hydrolase rbh
Putative secreted hydrolase {ECO:0000313|EMBL:AGU50671.1}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus B4.;"
S15_scaffold_134_curated_21
Burkholderiales bacterium JOSHI_001, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23096..23629)
DNA (534bp) protein (178aa)
Transcriptional regulator n=1 Tax=Burkholderiales bacterium JOSHI_001 RepID=H5WPJ3_9BURK
Transcriptional regulator {ECO:0000313|EMBL:EHR71592.1}; TaxID=864051 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales.;" source="Burkholderiales bacterium JOSHI_001.;"
Transcriptional regulator
S15_scaffold_134_curated_22
Burkholderiales bacterium JOSHI_001, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23700..24905
DNA (1206bp) protein (402aa)
2-polyprenyl-6-methoxyphenol hydroxylase-like oxidoreductase n=1 Tax=Burkholderiales bacterium JOSHI_001 RepID=H5WPJ2_9BURK rbh
2-polyprenyl-6-methoxyphenol hydroxylase-like oxidoreductase {ECO:0000313|EMBL:EHR71591.1}; TaxID=864051 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales.;" source="Burkholderiales bacterium JOSHI_001.;"
salicylate hydroxylase rbh
S15_scaffold_134_curated_23
R_Burkholderiales_67_14, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24925..25962
DNA (1038bp) protein (346aa)
Gentisate 1,2-dioxygenase id=1287798 bin=GWE1_Burkholderiales_65_30 species=unknown genus=unknown taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_Burkholderiales_65_30 organism_group=Betaproteobacteria rbh
ARD/ARD' family protein
Tax=RifCSPlowO2_12_Burkholderiales_67_14_curated
S15_scaffold_134_curated_24
Ralstonia mannitolilytica, Ralstonia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26011..26712
DNA (702bp) protein (234aa)
fumarylacetoacetase n=1 Tax=Limnohabitans sp. Rim28 RepID=UPI00030E5EC4 rbh
fumarylacetoacetase
Fumarylacetoacetase {ECO:0000313|EMBL:AJW44654.1}; TaxID=105219 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Ralstonia.;" source="Ralstonia mannitolilytica.;"
S15_scaffold_134_curated_25
GWA2_Curvibacter_64_110_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26747..27484
DNA (738bp) protein (246aa)
Cytochrome c4-like protein n=1 Tax=Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543 / TTB310) RepID=F5Y533_RAMTT rbh
cytochrome c4 rbh
Tax=GWA2_Curvibacter_64_110_curated
S15_scaffold_134_curated_26
GWA2_Curvibacter_64_110_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27481..28764
DNA (1284bp) protein (428aa)
Alcohol dehydrogenase cytochrome c subunit-like protein n=1 Tax=Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543 / TTB310) RepID=F5Y534_RAMTT rbh
alcohol dehydrogenase rbh
Tax=GWA2_Curvibacter_64_110_curated
S15_scaffold_134_curated_27
Hydrogenophaga sp. PBC, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28779..29264
DNA (486bp) protein (162aa)
Dihydrofolate reductase {ECO:0000256|PIRNR:PIRNR000194}; EC=1.5.1.3 {ECO:0000256|PIRNR:PIRNR000194};; TaxID=795665 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. PBC.;"
dihydrofolate reductase (EC:1.5.1.3)
Dihydrofolate reductase n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MNU8_9BURK
S15_scaffold_134_curated_28
BJP_08E140C01_Burkholderiales_65_30, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29299..30063
DNA (765bp) protein (255aa)
Putative uncharacterized protein n=1 Tax=Curvibacter putative symbiont of Hydra magnipapillata RepID=C9Y9Z2_9BURK rbh
exodeoxyribonuclease III rbh
Tax=BJP_08E140C01_Burkholderiales_65_30
S15_scaffold_134_curated_29
R_Burkholderiales_67_14, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30199..31692)
DNA (1494bp) protein (498aa)
Nitrogen metabolism transcriptional regulator NtrC id=1262658 bin=GWE1_Burkholderiales_65_30 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_Burkholderiales_65_30 organism_group=Betaproteobacteria rbh
nitrogen metabolism transcriptional regulator NtrC rbh
Tax=RifCSPlowO2_12_Burkholderiales_67_14_curated
S15_scaffold_134_curated_30
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31745..32827)
DNA (1083bp) protein (361aa)
signal transduction histidine kinase NtrB (EC:2.7.3.-) rbh
Signal transduction histidine kinase NtrB id=1262657 bin=GWE1_Burkholderiales_65_30 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_Burkholderiales_65_30 organism_group=Betaproteobacteria rbh
Tax=GWE1_Burkholderiales_65_30_curated
Displaying items 1-30 of 109 in total

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