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S15_scaffold_130_curated

Search features with annotation key words

Displaying items 1-30 of 112 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
S15_scaffold_130_curated_1
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3..689
DNA (687bp) protein (229aa)
cyclase n=1 Tax=Thiomonas sp. FB-6 RepID=UPI000360E6BD rbh
cyclase family protein rbh
Cyclase family protein {ECO:0000313|EMBL:ACS17307.1}; TaxID=543728 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain S110).;"
S15_scaffold_130_curated_2
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

693..2897
DNA (2205bp) protein (735aa)
Indolepyruvate ferredoxin oxidoreductase {ECO:0000313|EMBL:ACS17306.1}; EC=1.2.7.8 {ECO:0000313|EMBL:ACS17306.1};; TaxID=543728 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain S110).;"
indolepyruvate ferredoxin oxidoreductase (EC:1.2.7.8) rbh
Indolepyruvate ferredoxin oxidoreductase n=1 Tax=Variovorax paradoxus (strain S110) RepID=C5CLB1_VARPS rbh
S15_scaffold_130_curated_3
Verminephrobacter eiseniae, Verminephrobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3052..4578
DNA (1527bp) protein (509aa)
putative indolepyruvate oxidoreductase subunit B (EC:1.2.7.8) rbh
Indolepyruvate ferredoxin oxidoreductase beta subunit n=1 Tax=Verminephrobacter eiseniae (strain EF01-2) RepID=A1WJB1_VEREI rbh
Indolepyruvate ferredoxin oxidoreductase beta subunit {ECO:0000313|EMBL:ABM57718.1}; TaxID=391735 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Verminephrobacter.;" source="Verminephrobacter eiseniae (strain EF01-2).;"
S15_scaffold_130_curated_4
Herbaspirillum sp. CF444, Herbaspirillum, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4584..5507
DNA (924bp) protein (308aa)
qor; NADPH:quinone oxidoreductase (EC:1.6.5.5)
Zn-dependent oxidoreductase, NADPH:quinone reductase n=1 Tax=Herbaspirillum sp. CF444 RepID=J2KP12_9BURK
Zn-dependent oxidoreductase, NADPH:quinone reductase {ECO:0000313|EMBL:EJL81860.1}; TaxID=1144319 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Herbaspirillum.;" source="Herbaspirillum sp. CF444.;"
S15_scaffold_130_curated_5
Bradyrhizobium sp. LTSPM299, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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5568..6413
DNA (846bp) protein (282aa)
Inositol monophosphatase/fructose-1,6-bisphosphatase family protein n=1 Tax=Acidovorax sp. CF316 RepID=J1EJ86_9BURK rbh
Inositol monophosphatase {ECO:0000313|EMBL:KJC57133.1}; TaxID=1619233 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSPM299.;"
inositol monophosphatase rbh
S15_scaffold_130_curated_6
Candidatus Symbiobacter mobilis, Candidatus Symbiobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6484..9594
DNA (3111bp) protein (1037aa)
Signal transduction protein n=1 Tax=Candidatus Symbiobacter mobilis CR RepID=U5N8G7_9BURK rbh
signal transduction protein rbh
Signal transduction protein {ECO:0000313|EMBL:AGX86469.1}; TaxID=946483 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae.;" source="Candidatus Symbiobacter mobilis CR.;"
S15_scaffold_130_curated_7
R_Burkholderiales_63_240, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9662..9940
DNA (279bp) protein (93aa)
Uncharacterized protein n=1 Tax=mine drainage metagenome RepID=E6PWJ4_9ZZZZ
uncharacterized conserved protein
Tax=RIFCSPHIGHO2_01_FULL_Burkholderiales_63_240_curated
S15_scaffold_130_curated_8
R_Burkholderiales_67_14, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9941..10957)
DNA (1017bp) protein (339aa)
Sua5/YciO/YrdC/YwlC family protein; K07566 tRNA threonylcarbamoyladenosine biosynthesis protein id=5082952 bin=GWF1_Burkholderiales_GWF1_66_17 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD rbh
putative translation factor SUA5
Tax=RifCSPlowO2_12_Burkholderiales_67_14_curated
S15_scaffold_130_curated_9
BJP_08E140C01_Burkholderiales_65_30, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10954..12174)
DNA (1221bp) protein (407aa)
phosphoribosylaminoimidazole carboxylase ATPase (EC:4.1.1.21) rbh
Phosphoribosylaminoimidazole carboxylase ATPase id=1274630 bin=GWE1_Burkholderiales_65_30 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_Burkholderiales_65_30 organism_group=Betaproteobacteria rbh
Tax=BJP_08E140C01_Burkholderiales_65_30
S15_scaffold_130_curated_10
Acidovorax delafieldii, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12287..12778)
DNA (492bp) protein (164aa)
purE; N5-carboxyaminoimidazole ribonucleotide mutase (EC:5.4.99.18) id=12550787 bin=BDI species=Acidovorax radicis genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria
Phosphoribosylaminoimidazole carboxylase, catalytic subunit {ECO:0000313|EMBL:EER58103.1}; EC=4.1.1.21 {ECO:0000313|EMBL:EER58103.1};; Flags: Fragment;; TaxID=573060 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax delafieldii 2AN.;"
purE; N5-carboxyaminoimidazole ribonucleotide mutase (EC:5.4.99.18)
S15_scaffold_130_curated_11
Polaromonas sp. CF318, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12857..13753
DNA (897bp) protein (299aa)
Thioredoxin n=1 Tax=Polaromonas sp. CF318 RepID=J3D1K8_9BURK rbh
Thioredoxin {ECO:0000313|EMBL:EJL82661.1}; TaxID=1144318 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas sp. CF318.;"
thioredoxin rbh
S15_scaffold_130_curated_12
Hydrogenophaga sp. PBC, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13757..14527)
DNA (771bp) protein (257aa)
Class II aldolase/adducin-like protein n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MUS5_9BURK rbh
Class II aldolase/adducin-like protein {ECO:0000313|EMBL:EIK92965.1}; TaxID=795665 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. PBC.;"
class II aldolase/adducin-like protein rbh
S15_scaffold_130_curated_13
Acidovorax sp. NO-1, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14611..14808)
DNA (198bp) protein (66aa)
Putative uncharacterized protein n=1 Tax=Acidovorax sp. NO-1 RepID=H0BSJ5_9BURK
Putative uncharacterized protein {ECO:0000313|EMBL:EHL24657.1}; TaxID=512030 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. NO-1.;"
hypothetical protein
S15_scaffold_130_curated_14
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14877..15521)
DNA (645bp) protein (215aa)
CRP/FNR family transcriptional regulator; K01420 CRP/FNR family transcriptional regulator, anaerobic regulatory protein id=5081574 bin=GWF1_Burkholderiales_GWF1_66_17 species=Polaromonas naphthalenivorans genus=Polaromonas taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD
CRP/FNR family transcriptional regulator
Tax=GWE1_Burkholderiales_65_30_curated
S15_scaffold_130_curated_15
Acidovorax sp. KKS102, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15649..16209
DNA (561bp) protein (187aa)
Cytochrome b/b6 domain-containing protein n=1 Tax=Acidovorax sp. KKS102 RepID=K0IDF2_9BURK
cytochrome b/b6 domain-containing protein
Cytochrome b/b6 domain-containing protein {ECO:0000313|EMBL:AFU47366.1}; TaxID=358220 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. KKS102.;"
S15_scaffold_130_curated_16
Acidovorax delafieldii, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16227..16793
DNA (567bp) protein (189aa)
YceI family protein n=1 Tax=Acidovorax delafieldii 2AN RepID=C5T4F0_ACIDE
YceI family protein {ECO:0000313|EMBL:EER60632.1}; Flags: Precursor;; TaxID=573060 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax delafieldii 2AN.;"
hypothetical protein
S15_scaffold_130_curated_17
GWA2_Curvibacter_64_110_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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16825..17394
DNA (570bp) protein (190aa)
hypothetical protein id=12551013 bin=BDI species=Acidovorax sp. KKS102 genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria rbh
hypothetical protein rbh
Tax=GWA2_Curvibacter_64_110_curated
S15_scaffold_130_curated_18
Hydrogenophaga sp. PBC, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17396..17974)
DNA (579bp) protein (193aa)
NADPH-dependent fmn reductase n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MUS2_9BURK
NADPH-dependent fmn reductase {ECO:0000313|EMBL:EIK92962.1}; TaxID=795665 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. PBC.;"
NADPH-dependent fmn reductase
S15_scaffold_130_curated_19
BJP_08E140C01_Burkholderiales_65_30, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17971..18246)
DNA (276bp) protein (92aa)
hypothetical protein; K06940 id=5081578 bin=GWF1_Burkholderiales_GWF1_66_17 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD
hypothetical protein
Tax=BJP_08E140C01_Burkholderiales_65_30
S15_scaffold_130_curated_20
Acidovorax temperans, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18351..20333
DNA (1983bp) protein (661aa)
tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG n=1 Tax=Acidovorax avenae (strain ATCC 19860 / DSM 7227 / JCM 20985 / NCPPB 1011) RepID=F0Q0A5_ACIAP rbh
tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG {ECO:0000256|HAMAP-Rule:MF_00129}; Glucose-inhibited division protein A {ECO:0000256|HAMAP-Rule:MF_00129}; TaxID=80878 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax temperans.;"
glucose inhibited division protein A rbh
S15_scaffold_130_curated_21
RLO_Burkholderiales_61_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20330..20974
DNA (645bp) protein (215aa)
hypothetical protein n=1 Tax=Limnohabitans sp. Rim28 RepID=UPI00031DDFE3 rbh
gidB; glucose inhibited division protein B
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_61_40_curated
S15_scaffold_130_curated_22
BJP_08E140C01_Burkholderiales_65_30, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21155..21769
DNA (615bp) protein (205aa)
lysine exporter protein LysE/YggA id=5081585 bin=GWF1_Burkholderiales_GWF1_66_17 species=unknown genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD rbh
lysine exporter protein LysE/YggA rbh
Tax=BJP_08E140C01_Burkholderiales_65_30
S15_scaffold_130_curated_23
R_Burkholderiales_67_14, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21777..22553
DNA (777bp) protein (259aa)
Cobyrinic acid ac-diamide synthase n=1 Tax=Acidovorax sp. KKS102 RepID=K0HXN7_9BURK rbh
cobyrinic acid ac-diamide synthase rbh
Tax=RifCSPlowO2_12_Burkholderiales_67_14_curated
S15_scaffold_130_curated_24
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22550..23086
DNA (537bp) protein (179aa)
hypothetical protein id=12553674 bin=BDI species=Acidovorax sp. NO-1 genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
S15_scaffold_130_curated_25
Acidovorax temperans, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23092..24024
DNA (933bp) protein (311aa)
chromosome partitioning protein ParB n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI000376F45B rbh
Chromosome partitioning protein ParB {ECO:0000313|EMBL:KJA10978.1}; TaxID=80878 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax temperans.;"
parb-like partition protein rbh
S15_scaffold_130_curated_26
CG_Delta_02, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24076..24960
DNA (885bp) protein (295aa)
peptidoglycan-binding domain-containing protein id=14623550 bin=bin5_DeltaP species=unknown genus=unknown taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=bin5_DeltaP organism_group=Deltaproteobacteria rbh
peptidoglycan-binding domain-containing protein rbh
Tax=CG_Delta_02
S15_scaffold_130_curated_27
BJP_08E140C01_10KDA_Burkholderiales_65_51, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25014..25841
DNA (828bp) protein (276aa)
Type 12 methyltransferase n=1 Tax=Acidovorax sp. KKS102 RepID=K0HVH2_9BURK
type 12 methyltransferase
Tax=BJP_08E140C01_10KDA_Burkholderiales_65_51
S15_scaffold_130_curated_28
Hylemonella gracilis, Hylemonella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25757..29104)
DNA (3348bp) protein (1116aa)
Response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) n=1 Tax=Hylemonella gracilis ATCC 19624 RepID=F3KWW6_9BURK rbh
Diguanylate cyclase {ECO:0000313|EMBL:EYC49851.1}; TaxID=1458275 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hylemonella.;" source="Hylemonella gracilis str. Niagara R.;"
hypothetical protein
S15_scaffold_130_curated_29
Hydrogenophaga sp. PBC, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29139..30563)
DNA (1425bp) protein (475aa)
D-lactate dehydrogenase (Cytochrome) n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MUR5_9BURK rbh
D-lactate dehydrogenase (Cytochrome) {ECO:0000313|EMBL:EIK92955.1}; TaxID=795665 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. PBC.;"
FAD linked oxidase-like protein rbh
S15_scaffold_130_curated_30
GWA2_Curvibacter_64_110_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30641..31201
DNA (561bp) protein (187aa)
ATP--cobalamin adenosyltransferase id=1278981 bin=GWE1_Burkholderiales_65_30 species=unknown genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_Burkholderiales_65_30 organism_group=Betaproteobacteria rbh
ATP--cobalamin adenosyltransferase rbh
Tax=GWA2_Curvibacter_64_110_curated
Displaying items 1-30 of 112 in total

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