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S15_scaffold_106_curated

Search features with annotation key words

Displaying items 1-30 of 150 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
S15_scaffold_106_curated_1
R_Burkholderiales_67_14, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(271..1449)
DNA (1179bp) protein (393aa)
Major facilitator superfamily protein id=1283787 bin=GWE1_Burkholderiales_65_30 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_Burkholderiales_65_30 organism_group=Betaproteobacteria rbh
major facilitator superfamily protein rbh
Tax=RifCSPlowO2_12_Burkholderiales_67_14_curated
S15_scaffold_106_curated_2
R_Burkholderiales_67_14, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1569..2861
DNA (1293bp) protein (431aa)
Uncharacterized protein id=1274530 bin=GWE1_Burkholderiales_65_30 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_Burkholderiales_65_30 organism_group=Betaproteobacteria rbh
hypothetical protein rbh
Tax=RifCSPlowO2_12_Burkholderiales_67_14_curated
S15_scaffold_106_curated_3
BJP_08E140C01_Burkholderiales_65_30, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2969..4870
DNA (1902bp) protein (634aa)
Potassium transporter id=1274529 bin=GWE1_Burkholderiales_65_30 species=unknown genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_Burkholderiales_65_30 organism_group=Betaproteobacteria rbh
potassium transporter rbh
Tax=BJP_08E140C01_Burkholderiales_65_30
S15_scaffold_106_curated_4
BJP_08E140C01_Burkholderiales_65_30, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4948..5355
DNA (408bp) protein (136aa)
MerR family transcriptional regulator id=5080399 bin=GWF1_Burkholderiales_GWF1_66_17 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD
MerR family transcriptional regulator
Tax=BJP_08E140C01_Burkholderiales_65_30
S15_scaffold_106_curated_5
BJP_08E140C01_Burkholderiales_65_30, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5365..5976)
DNA (612bp) protein (204aa)
Glutathione S-transferase-like n=1 Tax=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) RepID=Q21QL7_RHOFD
glutathione S-transferase-like protein
Tax=BJP_08E140C01_Burkholderiales_65_30
S15_scaffold_106_curated_6
Acidovorax sp. KKS102, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6134..6595
DNA (462bp) protein (154aa)
Phenylacetic acid degradation-like protein n=1 Tax=Acidovorax sp. KKS102 RepID=K0HXP8_9BURK
phenylacetic acid degradation-like protein
Phenylacetic acid degradation-like protein {ECO:0000313|EMBL:AFU47828.1}; TaxID=358220 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. KKS102.;"
S15_scaffold_106_curated_7
R_Burkholderiales_67_14, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6614..7792
DNA (1179bp) protein (393aa)
Isovaleryl-CoA dehydrogenase n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MR44_9BURK rbh
Isovaleryl-CoA dehydrogenase rbh
Tax=RifCSPlowO2_12_Burkholderiales_67_14_curated
S15_scaffold_106_curated_8
RIFOXYC12_FULL_Burkholderiales_65_23_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7822..8481
DNA (660bp) protein (220aa)
carbonate dehydratase (EC:4.2.1.1) rbh
carbonate dehydratase n=1 Tax=Limnohabitans sp. Rim28 RepID=UPI0002D52391 rbh
Tax=RIFOXYC12_FULL_Burkholderiales_65_23_curated
S15_scaffold_106_curated_9
R_Burkholderiales_67_14, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8496..10307
DNA (1812bp) protein (604aa)
aceK; bifunctional isocitrate dehydrogenase kinase/phosphatase protein (EC:2.7.11.5); K00906 isocitrate dehydrogenase kinase/phosphatase [EC:2.7.11.5 3.1.3.-] id=5080395 bin=GWF1_Burkholderiales_GWF1_66_17 species=unknown genus=Polaromonas taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD rbh
aceK; bifunctional isocitrate dehydrogenase kinase/phosphatase (EC:3.1.3.-) rbh
Tax=RifCSPlowO2_12_Burkholderiales_67_14_curated
S15_scaffold_106_curated_10
BJP_08E140C01_Burkholderiales_65_30, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10349..11536
DNA (1188bp) protein (396aa)
acetyl-CoA acetyltransferase (EC:2.3.1.9); K00626 acetyl-CoA C-acetyltransferase [EC:2.3.1.9] id=5080394 bin=GWF1_Burkholderiales_GWF1_66_17 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD rbh
acetyl-CoA acetyltransferase rbh
Tax=BJP_08E140C01_Burkholderiales_65_30
S15_scaffold_106_curated_11
BJP_08E140C01_Burkholderiales_65_30, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11536..12204
DNA (669bp) protein (223aa)
short-chain dehydrogenase/reductase sdr id=5080392 bin=GWF1_Burkholderiales_GWF1_66_17 species=unknown genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD rbh
short chain dehydrogenase rbh
Tax=BJP_08E140C01_Burkholderiales_65_30
S15_scaffold_106_curated_12
Acidovorax sp. JS42, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12226..13353
DNA (1128bp) protein (376aa)
Acyl-CoA dehydrogenase domain protein n=1 Tax=Acidovorax sp. (strain JS42) RepID=A1WCA8_ACISJ rbh
acyl-CoA dehydrogenase domain-containing protein rbh
Acyl-CoA dehydrogenase domain protein {ECO:0000313|EMBL:ABM43883.1}; TaxID=232721 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. (strain JS42).;"
S15_scaffold_106_curated_13
R_Burkholderiales_67_14, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13390..14778
DNA (1389bp) protein (463aa)
trkA; NAD binding component of K+ transport system; K03499 trk system potassium uptake protein TrkA id=5080390 bin=GWF1_Burkholderiales_GWF1_66_17 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD rbh
trkA; K+ transport systems, NAD-binding component
Tax=RifCSPlowO2_12_Burkholderiales_67_14_curated
S15_scaffold_106_curated_14
BJP_08E140C01_10KDA_Burkholderiales_65_51, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14793..16247
DNA (1455bp) protein (485aa)
Trk system potassium uptake protein id=1269970 bin=GWE1_Burkholderiales_65_30 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_Burkholderiales_65_30 organism_group=Betaproteobacteria rbh
trkG; Trk-type K+ transport system, membrane components
Tax=BJP_08E140C01_10KDA_Burkholderiales_65_51
S15_scaffold_106_curated_15
Acidovorax sp. CF316, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16261..17886)
DNA (1626bp) protein (542aa)
hypothetical protein n=1 Tax=Acidovorax radicis RepID=UPI0002375207 rbh
Uncharacterized protein {ECO:0000313|EMBL:EJE50121.1}; Flags: Precursor;; TaxID=1144317 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. CF316.;"
hypothetical protein rbh
S15_scaffold_106_curated_16
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17994..18434
DNA (441bp) protein (147aa)
rhodanese-like protein id=5080386 bin=GWF1_Burkholderiales_GWF1_66_17 species=Curvibacter putative symbiont of Hydra magnipapillata genus=Curvibacter taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD
rhodanese-like protein
Tax=GWE1_Burkholderiales_65_30_curated
S15_scaffold_106_curated_17
Delftia tsuruhatensis, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18431..18826
DNA (396bp) protein (132aa)
UPF0225 protein HMPREF9701_05540 n=1 Tax=Delftia acidovorans CCUG 274B RepID=S2W6W3_DELAC
UPF0225 protein GY14_11995 {ECO:0000256|HAMAP-Rule:MF_00612}; TaxID=180282 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia tsuruhatensis.;"
hypothetical protein
S15_scaffold_106_curated_18
Hydrogenophaga sp. PBC, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18823..19494
DNA (672bp) protein (224aa)
HAD family hydrolase n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MR54_9BURK
HAD family hydrolase {ECO:0000313|EMBL:EIK91694.1}; TaxID=795665 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. PBC.;"
HAD family hydrolase
S15_scaffold_106_curated_19
Acidovorax sp. CF316, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19484..20518)
DNA (1035bp) protein (345aa)
DNA-binding domain-containing protein, AraC-type n=1 Tax=Acidovorax sp. CF316 RepID=J1ECK9_9BURK rbh
helix-turn-helix domain-containing protein rbh
DNA-binding domain-containing protein, AraC-type {ECO:0000313|EMBL:EJE50136.1}; Flags: Precursor;; TaxID=1144317 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. CF316.;"
S15_scaffold_106_curated_20
GWA2_Curvibacter_64_110_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20637..22244
DNA (1608bp) protein (536aa)
methylcrotonoyl-CoA carboxylase n=1 Tax=Limnohabitans sp. Rim47 RepID=UPI00038023B6 rbh
propionyl-CoA carboxylase
Tax=GWA2_Curvibacter_64_110_curated
S15_scaffold_106_curated_21
BJP_08E140C01_Burkholderiales_65_30, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22252..22761
DNA (510bp) protein (170aa)
Dinb family protein id=1269982 bin=GWE1_Burkholderiales_65_30 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_Burkholderiales_65_30 organism_group=Betaproteobacteria
DinB family protein
Tax=BJP_08E140C01_Burkholderiales_65_30
S15_scaffold_106_curated_22
R_Burkholderiales_67_14, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22758..23543
DNA (786bp) protein (262aa)
Enoyl-CoA hydratase/carnithine racemase id=1269983 bin=GWE1_Burkholderiales_65_30 species=Acidovorax sp. CF316 genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_Burkholderiales_65_30 organism_group=Betaproteobacteria rbh
enoyl-CoA hydratase rbh
Tax=RifCSPlowO2_12_Burkholderiales_67_14_curated
S15_scaffold_106_curated_23
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23568..24275
DNA (708bp) protein (236aa)
Putative transmembrane protein id=1269984 bin=GWE1_Burkholderiales_65_30 species=unknown genus=Delftia taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_Burkholderiales_65_30 organism_group=Betaproteobacteria
putative transmembrane protein
Tax=GWE1_Burkholderiales_65_30_curated
S15_scaffold_106_curated_24
Polaromonas sp. JS666, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24276..26282
DNA (2007bp) protein (669aa)
3-methylcrotonoyl-CoA carboxylase subunit alpha (EC:6.4.1.4) rbh
3-methylcrotonoyl-CoA carboxylase, alpha subunit {ECO:0000313|EMBL:ABE46049.1}; EC=6.4.1.4 {ECO:0000313|EMBL:ABE46049.1};; TaxID=296591 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas sp. (strain JS666 / ATCC BAA-500).;"
3-methylcrotonoyl-CoA carboxylase, alpha subunit n=1 Tax=Polaromonas sp. (strain JS666 / ATCC BAA-500) RepID=Q124J3_POLSJ rbh
S15_scaffold_106_curated_25
Acidovorax ebreus, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26368..27306
DNA (939bp) protein (313aa)
D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding n=1 Tax=Acidovorax ebreus (strain TPSY) RepID=B9MG77_ACIET rbh
d-isomer specific 2-hydroxyacid dehydrogenase rbh
D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding {ECO:0000313|EMBL:ACM34472.1}; TaxID=535289 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax ebreus (strain TPSY) (Diaphorobacter sp. (strain TPSY)).;"
S15_scaffold_106_curated_26
RLO_Burkholderiales_64_33, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27327..28235
DNA (909bp) protein (303aa)
hydroxymethylglutaryl-CoA lyase n=1 Tax=Limnohabitans sp. Rim47 RepID=UPI0002DF4367 rbh
hydroxymethylglutaryl-CoA lyase rbh
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_64_33_curated
S15_scaffold_106_curated_27
Hydrogenophaga sp. PBC, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28276..28494
DNA (219bp) protein (73aa)
AbrB family transcriptional regulator n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MR68_9BURK
AbrB family transcriptional regulator {ECO:0000313|EMBL:EIK91708.1}; TaxID=795665 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. PBC.;"
AbrB family transcriptional regulator
S15_scaffold_106_curated_28
Hydrogenophaga sp. PBC, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28491..28919
DNA (429bp) protein (143aa)
PilT domain-containing protein n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MR69_9BURK
PilT domain-containing protein {ECO:0000313|EMBL:EIK91709.1}; TaxID=795665 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. PBC.;"
PilT
S15_scaffold_106_curated_29
BJP_08E140C01_Burkholderiales_65_30, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28925..29569
DNA (645bp) protein (215aa)
lysine exporter protein LysE/YggA; K05834 homoserine/homoserine lactone efflux protein id=5080370 bin=GWF1_Burkholderiales_GWF1_66_17 species=Variovorax paradoxus genus=Variovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD
lysine exporter protein LysE/YggA
Tax=BJP_08E140C01_Burkholderiales_65_30
S15_scaffold_106_curated_30
CG_Rhodof_04, Rhodoferax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29583..30080
DNA (498bp) protein (166aa)
YbaK/prolyl-tRNA synthetase associated region id=1269989 bin=GWE1_Burkholderiales_65_30 species=Polaromonas naphthalenivorans genus=Polaromonas taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_Burkholderiales_65_30 organism_group=Betaproteobacteria
hypothetical protein
Tax=CG_Rhodof_04
Displaying items 1-30 of 150 in total

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