ggKbase home page

S15_scaffold_528_curated

Search features with annotation key words

Displaying items 1-30 of 38 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
S15_scaffold_528_curated_1
Chlorobium sp. GBChlB, Chlorobium, Chlorobiales, Chlorobia, Chlorobi, Bacteria

Not on your lists

3..1418
DNA (1416bp) protein (472aa)
Glutamine synthetase catalytic region n=1 Tax=Caldithrix abyssi DSM 13497 RepID=H1XUF2_9BACT rbh
Glutamine synthetase {ECO:0000313|EMBL:KER09917.1}; TaxID=1519464 species="Bacteria; Chlorobi; Chlorobia; Chlorobiales; Chlorobiaceae; Chlorobium/Pelodictyon group; Chlorobium.;" source="Chlorobium sp. GBChlB.;"
glutamine synthetase rbh
S15_scaffold_528_curated_2
unknown

Not on your lists

comp(1479..2048)
DNA (570bp) protein (190aa)

This feature has no annotations

S15_scaffold_528_curated_3
Isosphaera pallida, Isosphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(2144..2632)
DNA (489bp) protein (163aa)
D-alpha,beta-D-heptose 7-phosphate 1-kinase (EC:2.7.1.- 2.7.7.-)
RfaE bifunctional protein n=1 Tax=Holophaga foetida DSM 6591 RepID=H1P583_9BACT
Bifunctional protein HldE {ECO:0000256|HAMAP-Rule:MF_01603, ECO:0000256|SAAS:SAAS00015122}; TaxID=575540 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Isosphaera.;" source="Isosphaera pallida (strain ATCC 43644 / DSM 9630 / IS1B).;"
S15_scaffold_528_curated_4
RIFOXYD2_FULL_Proteobacteria_50_16_curated, Proteobacteria, Bacteria

Not on your lists

2688..2957
DNA (270bp) protein (90aa)
regulatory protein, FmdB family n=1 Tax=Methylovulum miyakonense RepID=UPI00035E5DA0
hypothetical protein
Tax=RIFOXYD2_FULL_Proteobacteria_50_16_curated
S15_scaffold_528_curated_5
Bacteroides sp. CAG:661, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists


3138..3539
DNA (402bp) protein (134aa)
30S ribosomal protein S12 n=1 Tax=Holophaga foetida DSM 6591 RepID=H1P582_9BACT
30S ribosomal protein S12 {ECO:0000256|HAMAP-Rule:MF_00403, ECO:0000256|RuleBase:RU003623}; TaxID=1262746 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides; environmental samples.;" source="Bacteroides sp. CAG:661.;"
30S ribosomal protein S12
S15_scaffold_528_curated_6
Geoalkalibacter subterraneus, Geoalkalibacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists


3553..4023
DNA (471bp) protein (157aa)
30S ribosomal protein S7 n=1 Tax=Holophaga foetida DSM 6591 RepID=H1P581_9BACT
30S ribosomal protein S7
30S ribosomal protein S7 {ECO:0000256|HAMAP-Rule:MF_00480}; TaxID=483547 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geoalkalibacter.;" source="Geoalkalibacter subterraneus.;"
S15_scaffold_528_curated_7
Geobacter metallireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4129..6237
DNA (2109bp) protein (703aa)
Elongation factor G n=1 Tax=Holophaga foetida DSM 6591 RepID=H1P580_9BACT rbh
fusA-3; elongation factor G rbh
Elongation factor G 1 {ECO:0000255|HAMAP-Rule:MF_00054}; Short=EF-G 1 {ECO:0000255|HAMAP-Rule:MF_00054};; TaxID=269799 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210).;"
S15_scaffold_528_curated_8
RIFCSPLOWO2_12_FULL_Acidobacteria_59_11_curated, Acidobacteria, Bacteria

Not on your lists


6526..6852
DNA (327bp) protein (109aa)
30S ribosomal protein S10 n=1 Tax=Holophaga foetida DSM 6591 RepID=H1P579_9BACT
30S ribosomal protein S10
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_59_11_curated
S15_scaffold_528_curated_9
R_Acidobacteria_59_13, Acidobacteria, Bacteria

Not on your lists


6868..7494
DNA (627bp) protein (209aa)
50S ribosomal protein L3 n=1 Tax=Holophaga foetida DSM 6591 RepID=H1P578_9BACT rbh
50S ribosomal protein L3P
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_59_13_curated
S15_scaffold_528_curated_10
Granulicella tundricola, Granulicella, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists


7496..8131
DNA (636bp) protein (212aa)
50S ribosomal protein L4 n=1 Tax=Holophaga foetida DSM 6591 RepID=H1P577_9BACT rbh
50S ribosomal protein L4
50S ribosomal protein L4 {ECO:0000256|HAMAP-Rule:MF_01328}; TaxID=1198114 species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Granulicella.;" source="Granulicella tundricola (strain ATCC BAA-1859 / DSM 23138 / MP5ACTX9).;"
S15_scaffold_528_curated_11
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists


8128..8403
DNA (276bp) protein (92aa)
50S ribosomal protein L23 n=1 Tax=Holophaga foetida DSM 6591 RepID=H1P576_9BACT
ribosomal protein L25/L23
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
S15_scaffold_528_curated_12
Thermovibrio ammonificans, Thermovibrio, Desulfurobacteriales, Aquificae, Aquificae, Bacteria

Not on your lists


8485..9306
DNA (822bp) protein (274aa)
50S ribosomal protein L2 n=1 Tax=Holophaga foetida DSM 6591 RepID=H1P575_9BACT rbh
ribosomal protein L2 rbh
50S ribosomal protein L2 {ECO:0000256|HAMAP-Rule:MF_01320}; TaxID=648996 species="Bacteria; Aquificae; Desulfurobacteriales; Desulfurobacteriaceae; Thermovibrio.;" source="Thermovibrio ammonificans (strain DSM 15698 / JCM 12110 / HB-1).;"
S15_scaffold_528_curated_13
Denitrovibrio acetiphilus, Denitrovibrio, Deferribacterales, Deferribacteres, Deferribacteres, Bacteria

Not on your lists


9318..9602
DNA (285bp) protein (95aa)
30S ribosomal protein S19 n=1 Tax=Holophaga foetida DSM 6591 RepID=H1P574_9BACT
30S ribosomal protein S19
30S ribosomal protein S19 {ECO:0000256|HAMAP-Rule:MF_00531}; TaxID=522772 species="Bacteria; Deferribacteres; Deferribacterales; Deferribacteraceae; Denitrovibrio.;" source="Denitrovibrio acetiphilus (strain DSM 12809 / N2460).;"
S15_scaffold_528_curated_14
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists


9605..9961
DNA (357bp) protein (119aa)
50S ribosomal protein L22 n=1 Tax=Holophaga foetida DSM 6591 RepID=H1P573_9BACT
50S ribosomal protein L22
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
S15_scaffold_528_curated_15
RBG_16_Acidobacteria_64_8_curated, Acidobacteria, Bacteria

Not on your lists


9964..10611
DNA (648bp) protein (216aa)
30S ribosomal protein S3 n=1 Tax=Holophaga foetida DSM 6591 RepID=H1P572_9BACT rbh
30S ribosomal protein S3
Tax=RBG_16_Acidobacteria_64_8_curated
S15_scaffold_528_curated_16
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists


10621..11040
DNA (420bp) protein (140aa)
50S ribosomal protein L16 n=1 Tax=Holophaga foetida DSM 6591 RepID=H1P571_9BACT
50S ribosomal protein L16 {ECO:0000256|HAMAP-Rule:MF_01342, ECO:0000256|RuleBase:RU004414}; TaxID=454194 species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
50S ribosomal protein L16
S15_scaffold_528_curated_17
Thalassospira permensis, Thalassospira, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


11046..11246
DNA (201bp) protein (67aa)
50S ribosomal protein L29 n=1 Tax=Holophaga foetida DSM 6591 RepID=H1P570_9BACT
50S ribosomal protein L29
50S ribosomal protein L29 {ECO:0000256|HAMAP-Rule:MF_00374}; TaxID=1353532 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Thalassospira.;" source="Thalassospira permensis NBRC 106175.;"
S15_scaffold_528_curated_18
uncultured Bacteroidetes bacterium, Bacteroidetes, Bacteria

Not on your lists


11255..11512
DNA (258bp) protein (86aa)
30S ribosomal protein S17 n=1 Tax=Holophaga foetida DSM 6591 RepID=H1P569_9BACT
30S ribosomal protein S17 {ECO:0000256|HAMAP-Rule:MF_01345, ECO:0000256|RuleBase:RU003873}; TaxID=152509 species="Bacteria; Bacteroidetes; environmental samples.;" source="uncultured Bacteroidetes bacterium.;"
30S ribosomal protein S17
S15_scaffold_528_curated_19
R_Acidobacteria_61_28, Acidobacteria, Bacteria

Not on your lists


11522..11890
DNA (369bp) protein (123aa)
50S ribosomal protein L14 n=1 Tax=Holophaga foetida DSM 6591 RepID=H1P568_9BACT
50S ribosomal protein L14
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_61_28_curated
S15_scaffold_528_curated_20
Alicyclobacillus acidocaldarius, Alicyclobacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists


11890..12168
DNA (279bp) protein (93aa)
50S ribosomal protein L24 n=1 Tax=Holophaga foetida DSM 6591 RepID=H1P567_9BACT
rplX; 50S ribosomal protein L24
50S ribosomal protein L24 {ECO:0000256|HAMAP-Rule:MF_01326}; TaxID=1048834 species="Bacteria; Firmicutes; Bacilli; Bacillales; Alicyclobacillaceae; Alicyclobacillus.;" source="Alicyclobacillus acidocaldarius (strain Tc-4-1) (Bacillus; acidocaldarius).;"
S15_scaffold_528_curated_21
GWC2_Deltaproteobacteria_55_46b_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists


12361..12924
DNA (564bp) protein (188aa)
50S ribosomal protein L5 n=1 Tax=Holophaga foetida DSM 6591 RepID=H1P566_9BACT rbh
rplE; 50S ribosomal protein L5
Tax=GWC2_Deltaproteobacteria_55_46b_curated
S15_scaffold_528_curated_22
GWC2_OP11_38_9_partial, Curtissbacteria, Microgenomates, Bacteria

Not on your lists


12943..13128
DNA (186bp) protein (62aa)
30S ribosomal protein S14 type Z n=1 Tax=Holophaga foetida DSM 6591 RepID=H1P565_9BACT
30S ribosomal protein S14 type Z {ECO:0000313|EMBL:KKQ89702.1}; TaxID=1618414 species="Bacteria; Microgenomates.;" source="Microgenomates (Curtissbacteria) bacterium GW2011_GWC2_38_9.;"
30S ribosomal protein S14
S15_scaffold_528_curated_23
Clostridium sp. CAG:62, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


13141..13536
DNA (396bp) protein (132aa)
30S ribosomal protein S8 n=1 Tax=Holophaga foetida DSM 6591 RepID=H1P564_9BACT
30S ribosomal protein S8 {ECO:0000256|HAMAP-Rule:MF_01302}; TaxID=1262828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:62.;"
30S ribosomal protein S8
S15_scaffold_528_curated_24
RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated, Acidobacteria, Bacteria

Not on your lists


13585..14121
DNA (537bp) protein (179aa)
50S ribosomal protein L6 n=1 Tax=Holophaga foetida DSM 6591 RepID=H1P563_9BACT rbh
50S ribosomal protein L6P
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated
S15_scaffold_528_curated_25
Paenibacillus larvae, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists


14131..14493
DNA (363bp) protein (121aa)
50S ribosomal protein L18 n=1 Tax=Holophaga foetida DSM 6591 RepID=H1P562_9BACT
rplR; 50S ribosomal protein L18
50S ribosomal protein L18 {ECO:0000256|HAMAP-Rule:MF_01337}; TaxID=697286 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus.;" source="Paenibacillus larvae subsp. larvae DSM 25719.;"
S15_scaffold_528_curated_26
R_Acidobacteria_68_18, Acidobacteria, Bacteria

Not on your lists


14503..15027
DNA (525bp) protein (175aa)
30S ribosomal protein S5 n=1 Tax=Holophaga foetida DSM 6591 RepID=H1P561_9BACT
30S ribosomal protein S5
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_68_18_curated
S15_scaffold_528_curated_27
unknown

Not on your lists


15029..15226
DNA (198bp) protein (66aa)
LSU ribosomal protein L30P n=1 Tax=Holophaga foetida DSM 6591 RepID=H1P560_9BACT
S15_scaffold_528_curated_28
Peptoniphilus duerdenii, Peptoniphilus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


15230..15691
DNA (462bp) protein (154aa)
50S ribosomal protein L15 n=1 Tax=Holophaga foetida DSM 6591 RepID=H1P559_9BACT
50S ribosomal protein L15 {ECO:0000256|HAMAP-Rule:MF_01341, ECO:0000256|RuleBase:RU003889}; TaxID=862517 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptoniphilaceae; Peptoniphilus.;" source="Peptoniphilus duerdenii ATCC BAA-1640.;"
50S ribosomal protein L15
S15_scaffold_528_curated_29
GWC2_Geobacteraceae_55_20_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists


15698..17053
DNA (1356bp) protein (452aa)
Protein translocase subunit SecY n=1 Tax=Holophaga foetida DSM 6591 RepID=H1P558_9BACT rbh
secY; preprotein translocase subunit SecY rbh
Tax=GWC2_Geobacteraceae_55_20_curated
S15_scaffold_528_curated_30
Aurantimonas manganoxydans, Aurantimonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17050..17709
DNA (660bp) protein (220aa)
Adenylate kinase {ECO:0000256|HAMAP-Rule:MF_00235, ECO:0000256|RuleBase:RU003331}; Short=AK {ECO:0000256|HAMAP-Rule:MF_00235};; EC=2.7.4.3 {ECO:0000256|HAMAP-Rule:MF_00235, ECO:0000256|RuleBase:RU003331};; ATP-AMP transphosphorylase {ECO:0000256|HAMAP-Rule:MF_00235}; ATP:AMP phosphotransferase {ECO:0000256|HAMAP-Rule:MF_00235}; Adenylate monophosphate kinase {ECO:0000256|HAMAP-Rule:MF_00235}; TaxID=287752 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Aurantimonadaceae; Aurantimonas.;" source="Manganese-oxidizing bacterium (strain SI85-9A1).;"
adenylate kinase (EC:2.7.4.3)
Adenylate kinase n=1 Tax=Holophaga foetida DSM 6591 RepID=H1P557_9BACT rbh
Displaying items 1-30 of 38 in total

View Taxonomy