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S15_scaffold_427_curated

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Displaying 26 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
S15_scaffold_427_curated_1
Pseudomonas protegens, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(247..2637)
DNA (2391bp) protein (797aa)
General secretion pathway protein D n=1 Tax=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) RepID=Q4KD20_PSEF5 rbh
gspD; general secretion protein D rbh
General secretion pathway protein D {ECO:0000313|EMBL:AAY92029.1}; TaxID=220664 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477).;"
S15_scaffold_427_curated_2
Pseudomonas sp. Os17, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2634..3206)
DNA (573bp) protein (191aa)
Putative type II secretion system protein n=1 Tax=Pseudomonas protegens CHA0 RepID=R4RJA7_9PSED
General secretion protein M {ECO:0000313|EMBL:BAQ74991.1}; TaxID=1500686 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. Os17.;"
putative type II secretion system protein
S15_scaffold_427_curated_3
Pseudomonas sp. Os17, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3199..4383)
DNA (1185bp) protein (395aa)
Type II secretion system protein L n=1 Tax=Pseudomonas protegens CHA0 RepID=R4RJP2_9PSED rbh
General secretion protein L {ECO:0000313|EMBL:BAQ74992.1}; TaxID=1500686 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. Os17.;"
general secretion pathway protein L rbh
S15_scaffold_427_curated_4
Pseudomonas protegens, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4380..5363)
DNA (984bp) protein (328aa)
Type II secretion system protein K n=1 Tax=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) RepID=Q4KD23_PSEF5 rbh
general secretion protein K rbh
Type II secretion system protein K {ECO:0000256|PIRNR:PIRNR002786}; TaxID=220664 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477).;"
S15_scaffold_427_curated_5
Pseudomonas sp. St29, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5372..5818)
DNA (447bp) protein (149aa)
General secretion pathway protein G n=2 Tax=Pseudomonas protegens RepID=Q4KD24_PSEF5
General secretion pathway protein GspG {ECO:0000313|EMBL:BAQ81292.1}; TaxID=1500687 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. St29.;"
general secretion pathway protein GspG
S15_scaffold_427_curated_6
Pseudomonas sp. Os17, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5967..6353
DNA (387bp) protein (129aa)
General secretion pathway protein I n=1 Tax=Pseudomonas sp. CMAA1215 RepID=U6ZSS1_9PSED
Type II secretion pseudopilin HxcV {ECO:0000313|EMBL:BAQ74995.1}; TaxID=1500686 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. Os17.;"
gspI; general secretion protein I
S15_scaffold_427_curated_7
Pseudomonas protegens, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6357..6797)
DNA (441bp) protein (147aa)
Uncharacterized protein n=2 Tax=Pseudomonas protegens RepID=R4RJA4_9PSED
general secretion protein C
Putative general secretion pathway protein C {ECO:0000313|EMBL:AAY92023.2}; TaxID=220664 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477).;"
S15_scaffold_427_curated_8
Pseudomonas protegens, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6913..7377
DNA (465bp) protein (155aa)
General secretion pathway protein H n=2 Tax=Pseudomonas protegens RepID=R4RJN7_9PSED
general secretion pathway protein GspH
General secretion pathway protein H {ECO:0000313|EMBL:AAY92022.1}; TaxID=220664 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477).;"
S15_scaffold_427_curated_9
Pseudomonas protegens, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7374..7982
DNA (609bp) protein (203aa)
Putative general secretion pathway protein J n=1 Tax=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) RepID=Q4KD28_PSEF5 rbh
general secretion protein J rbh
Putative general secretion pathway protein J {ECO:0000313|EMBL:AAY92021.1}; TaxID=220664 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477).;"
S15_scaffold_427_curated_10
Pseudomonas protegens, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8212..9162)
DNA (951bp) protein (317aa)
Sigma factor regulatory protein, FecR/PupR family n=1 Tax=Pseudomonas protegens CHA0 RepID=R4R8C9_9PSED rbh
sigma factor regulatory protein, FecR/PupR family rbh
Sigma factor regulatory protein, FecR/PupR family {ECO:0000313|EMBL:AAY92020.1}; TaxID=220664 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477).;"
S15_scaffold_427_curated_11
Pseudomonas protegens, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9201..9746)
DNA (546bp) protein (182aa)
RNA polymerase sigma-70 factor, ECF family n=2 Tax=Pseudomonas protegens RepID=Q4KD30_PSEF5 rbh
RNA polymerase sigma-70 factor, ECF subfamily rbh
RNA polymerase sigma-70 factor, ECF family {ECO:0000313|EMBL:AAY92019.1}; TaxID=220664 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477).;"
S15_scaffold_427_curated_12
Pseudomonas sp. Os17, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9743..10489)
DNA (747bp) protein (249aa)
Putative TonB-dependent siderophore receptor n=1 Tax=Pseudomonas protegens CHA0 RepID=R4RJA1_9PSED rbh
putative TonB-dependent siderophore receptor rbh
Secretin and TonB N terminus short domain-containing protein {ECO:0000313|EMBL:BAQ75001.1}; TaxID=1500686 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. Os17.;"
S15_scaffold_427_curated_13
Pseudomonas protegens, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10643..10957
DNA (315bp) protein (105aa)
Uncharacterized protein n=2 Tax=Pseudomonas protegens RepID=Q4KD32_PSEF5
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AAY92017.1}; TaxID=220664 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477).;"
S15_scaffold_427_curated_14
Pseudomonas sp. Os17, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11140..12504
DNA (1365bp) protein (455aa)
Putative membrane protein n=2 Tax=Pseudomonas protegens RepID=Q4KD33_PSEF5 rbh
Putative membrane protein {ECO:0000313|EMBL:BAQ75003.1}; TaxID=1500686 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. Os17.;"
hypothetical protein
S15_scaffold_427_curated_15
Pseudomonas sp. Os17, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12850..13575
DNA (726bp) protein (242aa)
Uncharacterized protein n=1 Tax=Pseudomonas protegens CHA0 RepID=R4R8C6_9PSED rbh
META domain-containing protein {ECO:0000313|EMBL:BAQ75004.1}; TaxID=1500686 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. Os17.;"
hypothetical protein rbh
S15_scaffold_427_curated_16
Pseudomonas protegens, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13676..18535)
DNA (4860bp) protein (1620aa)
NAD-glutamate dehydrogenase {ECO:0000313|EMBL:AAY92014.2}; EC=1.4.1.2 {ECO:0000313|EMBL:AAY92014.2};; TaxID=220664 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477).;"
NAD-glutamate dehydrogenase n=1 Tax=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) RepID=Q4KD35_PSEF5 rbh
NAD-glutamate dehydrogenase
S15_scaffold_427_curated_17
Pseudomonas sp. St29, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19089..19445
DNA (357bp) protein (119aa)
Uncharacterized protein n=1 Tax=Pseudomonas protegens CHA0 RepID=R4RJ99_9PSED
Uncharacterized protein {ECO:0000313|EMBL:BAQ81304.1}; TaxID=1500687 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. St29.;"
hypothetical protein
S15_scaffold_427_curated_18
Pseudomonas fluorescens, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19703..20662
DNA (960bp) protein (320aa)
MoxR n=8 Tax=Pseudomonas RepID=K0WH41_PSEFL rbh
ATPase AAA
MoxR {ECO:0000313|EMBL:EJZ58702.1}; TaxID=743713 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas fluorescens R124.;"
S15_scaffold_427_curated_19
Pseudomonas sp. St29, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20668..21609
DNA (942bp) protein (314aa)
Uncharacterized protein n=2 Tax=Pseudomonas protegens RepID=Q4KD38_PSEF5 rbh
PF01882 family protein {ECO:0000313|EMBL:BAQ81306.1}; TaxID=1500687 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. St29.;"
hypothetical protein rbh
S15_scaffold_427_curated_20
Pseudomonas protegens, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21606..22100
DNA (495bp) protein (165aa)
Uncharacterized protein n=2 Tax=Pseudomonas protegens RepID=Q4KD39_PSEF5 rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:AAY92010.1}; TaxID=220664 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477).;"
S15_scaffold_427_curated_21
Pseudomonas sp. Os17, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22093..23169
DNA (1077bp) protein (359aa)
von willebrand factor type A domain protein BatA n=1 Tax=Pseudomonas protegens CHA0 RepID=R4R5W3_9PSED rbh
von Willebrand factor type A domain-containing protein {ECO:0000313|EMBL:BAQ75010.1}; TaxID=1500686 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. Os17.;"
batA; von willebrand factor type A domain protein BatA rbh
S15_scaffold_427_curated_22
Pseudomonas sp. Os17, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23166..24908
DNA (1743bp) protein (581aa)
Tetratricopeptide repeat protein n=1 Tax=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) RepID=Q4KD41_PSEF5 rbh
TPR domain-containing protein {ECO:0000313|EMBL:BAQ75011.1}; TaxID=1500686 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. Os17.;"
TPR domain-containing protein
S15_scaffold_427_curated_23
Pseudomonas sp. St29, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24905..26542
DNA (1638bp) protein (546aa)
Uncharacterized protein n=1 Tax=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) RepID=Q4KD42_PSEF5 rbh
Protein BatD {ECO:0000313|EMBL:BAQ81310.1}; TaxID=1500687 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. St29.;"
hypothetical protein rbh
S15_scaffold_427_curated_24
Pseudomonas sp. Os17, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26797..28041
DNA (1245bp) protein (415aa)
Exonuclease SbcCD, D subunit n=1 Tax=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) RepID=Q4KD46_PSEF5 rbh
Exonuclease SbcD {ECO:0000313|EMBL:BAQ75013.1}; TaxID=1500686 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. Os17.;"
exonuclease SbcD
S15_scaffold_427_curated_25
Pseudomonas sp. St29, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28038..31679
DNA (3642bp) protein (1214aa)
Nuclease SbcCD, C subunit n=1 Tax=Pseudomonas sp. CF161 RepID=S6JDM1_9PSED rbh
Exonuclease SbcC {ECO:0000313|EMBL:BAQ81312.1}; TaxID=1500687 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. St29.;"
sbcC; nuclease sbcCD subunit C rbh
S15_scaffold_427_curated_26
Pseudomonas sp. Os17, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

31676..32302
DNA (627bp) protein (209aa)
Glutathione S-transferase domain protein n=1 Tax=Pseudomonas protegens CHA0 RepID=R4R5V9_9PSED rbh
Glutathione S-transferase-like protein {ECO:0000313|EMBL:BAQ75015.1}; TaxID=1500686 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. Os17.;"
glutathione S-transferase domain protein rbh
Displaying 26 items

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