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S15_scaffold_5_curated

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Displaying items 1-30 of 342 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
S15_scaffold_5_curated_1
Pseudomonas chlororaphis, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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3..179
DNA (177bp) protein (59aa)
Uncharacterized protein n=1 Tax=Pseudomonas sp. GM80 RepID=J3IFB7_9PSED
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AIC21851.1}; TaxID=587753 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas chlororaphis.;"
S15_scaffold_5_curated_2
Pseudomonas sp. St29, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(578..1729)
DNA (1152bp) protein (384aa)
mmgC5; acyl-CoA dehydrogenase MmgC (EC:1.3.99.-) rbh
Acyl-CoA dehydrogenase n=2 Tax=Pseudomonas protegens RepID=Q4KC64_PSEF5 rbh
Acyl-CoA dehydrogenase {ECO:0000313|EMBL:BAQ81051.1}; TaxID=1500687 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. St29.;"
S15_scaffold_5_curated_3
Pseudomonas sp. Os17, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1734..2840)
DNA (1107bp) protein (369aa)
Enoyl-CoA hydratase/isomerase family protein n=1 Tax=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) RepID=Q4KC65_PSEF5 rbh
Enoyl-CoA hydratase/isomerase {ECO:0000313|EMBL:BAQ74760.1}; TaxID=1500686 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. Os17.;"
enoyl-CoA hydratase rbh
S15_scaffold_5_curated_4
Pseudomonas sp. St29, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3104..3967
DNA (864bp) protein (288aa)
Transcriptional regulator, LysR family n=1 Tax=Pseudomonas protegens CHA0 RepID=R4RGJ8_9PSED rbh
Transcriptional regulator, LysR family {ECO:0000313|EMBL:BAQ81042.1}; TaxID=1500687 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. St29.;"
transcriptional regulator, LysR family rbh
S15_scaffold_5_curated_5
Pseudomonas sp. Os17, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4161..4865)
DNA (705bp) protein (235aa)
CBS domain protein n=1 Tax=Pseudomonas protegens CHA0 RepID=R4R941_9PSED rbh
Membrane protein {ECO:0000313|EMBL:BAQ74751.1}; TaxID=1500686 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. Os17.;"
HPP family protein
S15_scaffold_5_curated_6
Pseudomonas sp. St29, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5175..5690)
DNA (516bp) protein (172aa)
Acetyltransferase, GNAT family n=1 Tax=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) RepID=Q4KC75_PSEF5
GNAT family acetyltransferase {ECO:0000313|EMBL:BAQ81040.1}; TaxID=1500687 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. St29.;"
GNAT family acetyltransferase
S15_scaffold_5_curated_7
Pseudomonas sp. St29, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5732..7357)
DNA (1626bp) protein (542aa)
Putative membrane protein n=1 Tax=Pseudomonas protegens CHA0 RepID=R4RK37_9PSED rbh
Dolichyl-phosphate-mannose-protein mannosyltransferase {ECO:0000313|EMBL:BAQ81039.1}; TaxID=1500687 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. St29.;"
dolichyl-phosphate-mannose-protein mannosyltransferase
S15_scaffold_5_curated_8
Pseudomonas sp. Os17, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7358..8722)
DNA (1365bp) protein (455aa)
UDP-glucose 6-dehydrogenase n=2 Tax=Pseudomonas protegens RepID=Q4KC77_PSEF5 rbh
UDP-glucose 6-dehydrogenase {ECO:0000313|EMBL:BAQ74748.1}; TaxID=1500686 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. Os17.;"
UDP-glucose 6-dehydrogenase
S15_scaffold_5_curated_9
Pseudomonas sp. St29, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8719..9132)
DNA (414bp) protein (138aa)
Probable 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF n=1 Tax=Pseudomonas protegens CHA0 RepID=R4RGJ4_9PSED
Probable 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF {ECO:0000256|HAMAP-Rule:MF_00538, ECO:0000256|SAAS:SAAS00016708}; Short=L-Ara4N-phosphoundecaprenol flippase subunit ArnF {ECO:0000256|HAMAP-Rule:MF_00538};; Undecaprenyl phosphate-aminoarabinose flippase subunit ArnF {ECO:0000256|HAMAP-Rule:MF_00538}; TaxID=1500687 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. St29.;"
4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF
S15_scaffold_5_curated_10
Pseudomonas sp. St29, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9129..9473)
DNA (345bp) protein (115aa)
Probable 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE n=1 Tax=Pseudomonas sp. CMAA1215 RepID=U6ZNE9_9PSED
Probable 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE {ECO:0000256|HAMAP-Rule:MF_01869, ECO:0000256|SAAS:SAAS00166808}; Short=L-Ara4N-phosphoundecaprenol flippase subunit ArnE {ECO:0000256|HAMAP-Rule:MF_01869};; Undecaprenyl phosphate-aminoarabinose flippase subunit ArnE {ECO:0000256|HAMAP-Rule:MF_01869}; TaxID=1500687 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. St29.;"
SMR family multidrug resistance protein
S15_scaffold_5_curated_11
Pseudomonas sp. St29, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9470..11119)
DNA (1650bp) protein (550aa)
Undecaprenyl phosphate-alpha-4-amino-4-deoxy-L-arabinose arabinosyl transferase {ECO:0000256|HAMAP-Rule:MF_01165}; EC=2.4.2.43 {ECO:0000256|HAMAP-Rule:MF_01165};; 4-amino-4-deoxy-L-arabinose lipid A transferase {ECO:0000256|HAMAP-Rule:MF_01165}; Lipid IV(A) 4-amino-4-deoxy-L-arabinosyltransferase {ECO:0000256|HAMAP-Rule:MF_01165}; Undecaprenyl phosphate-alpha-L-Ara4N transferase {ECO:0000256|HAMAP-Rule:MF_01165}; TaxID=1500687 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. St29.;"
arnT_1; 4-amino-4-deoxy-L-arabinose transferase (EC:2.-.-.-) rbh
Undecaprenyl phosphate-alpha-4-amino-4-deoxy-L-arabinose arabinosyl transferase 1 n=2 Tax=Pseudomonas protegens RepID=ARNT1_PSEF5 rbh
S15_scaffold_5_curated_12
Pseudomonas protegens, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11116..12000)
DNA (885bp) protein (295aa)
Probable 4-deoxy-4-formamido-L-arabinose-phosphoundecaprenol deformylase ArnD {ECO:0000255|HAMAP-Rule:MF_01870}; EC=3.5.1.n3 {ECO:0000255|HAMAP-Rule:MF_01870};; TaxID=220664 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477).;"
Probable 4-deoxy-4-formamido-L-arabinose-phosphoundecaprenol deformylase ArnD n=1 Tax=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) RepID=ARND_PSEF5 rbh
polysaccharide deacetylase rbh
S15_scaffold_5_curated_13
Pseudomonas sp. Os17, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12000..14006)
DNA (2007bp) protein (669aa)
arnA; bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase (EC:1.1.1.- 2.1.2.-) rbh
Bifunctional polymyxin resistance protein ArnA n=1 Tax=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) RepID=ARNA_PSEF5 rbh
Bifunctional polymyxin resistance protein ArnA {ECO:0000256|HAMAP-Rule:MF_01166, ECO:0000256|SAAS:SAAS00018678}; TaxID=1500686 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. Os17.;"
S15_scaffold_5_curated_14
Pseudomonas sp. Os17, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14003..15022)
DNA (1020bp) protein (340aa)
Undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase {ECO:0000256|HAMAP-Rule:MF_01164, ECO:0000256|SAAS:SAAS00016541}; EC=2.4.2.53 {ECO:0000256|HAMAP-Rule:MF_01164, ECO:0000256|SAAS:SAAS00016513};; Undecaprenyl-phosphate Ara4FN transferase {ECO:0000256|HAMAP-Rule:MF_01164}; TaxID=1500686 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. Os17.;"
Undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase n=2 Tax=Pseudomonas protegens RepID=ARNC_PSEF5 rbh
glycosyl transferase ArnC
S15_scaffold_5_curated_15
Pseudomonas sp. St29, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15028..16167)
DNA (1140bp) protein (380aa)
UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase {ECO:0000256|HAMAP-Rule:MF_01167, ECO:0000256|SAAS:SAAS00016536}; EC=2.6.1.87 {ECO:0000256|HAMAP-Rule:MF_01167, ECO:0000256|SAAS:SAAS00016523};; UDP-(beta-L-threo-pentapyranosyl-4''-ulose diphosphate) aminotransferase {ECO:0000256|HAMAP-Rule:MF_01167}; UDP-4-amino-4-deoxy-L-arabinose aminotransferase {ECO:0000256|HAMAP-Rule:MF_01167}; TaxID=1500687 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. St29.;"
arnB; UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase (EC:2.6.1.-) rbh
UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase n=1 Tax=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) RepID=ARNB_PSEF5 rbh
S15_scaffold_5_curated_16
Pseudomonas sp. St29, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16645..17589
DNA (945bp) protein (315aa)
Site-specific recombinase, phage integrase family n=2 Tax=Pseudomonas protegens RepID=Q4KC85_PSEF5 rbh
Phage integrase family site specific recombinase {ECO:0000313|EMBL:BAQ81029.1}; TaxID=1500687 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. St29.;"
site-specific recombinase, phage integrase family rbh
S15_scaffold_5_curated_17
Pseudomonas protegens, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17601..17864)
DNA (264bp) protein (88aa)
Uncharacterized protein n=2 Tax=Pseudomonas protegens RepID=Q4KC86_PSEF5
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AAY92311.1}; TaxID=220664 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477).;"
S15_scaffold_5_curated_18
Pseudomonas protegens, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17969..18493
DNA (525bp) protein (175aa)
Uncharacterized protein n=1 Tax=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) RepID=Q4KC90_PSEF5
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AAY92307.1}; TaxID=220664 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477).;"
S15_scaffold_5_curated_19
Pseudomonas sp. CMAA1215, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18487..18957
DNA (471bp) protein (157aa)
Uncharacterized protein n=1 Tax=Pseudomonas sp. CMAA1215 RepID=U6ZLA1_9PSED
Uncharacterized protein {ECO:0000313|EMBL:ERO59932.1}; TaxID=1387231 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. CMAA1215.;"
lipoprotein
S15_scaffold_5_curated_20
Pseudomonas sp. Os17, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18976..19293)
DNA (318bp) protein (106aa)
Uncharacterized protein n=1 Tax=Pseudomonas sp. CF161 RepID=S6IIE0_9PSED
Uncharacterized protein {ECO:0000313|EMBL:BAQ74733.1}; TaxID=1500686 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. Os17.;"
hypothetical protein
S15_scaffold_5_curated_21
Pseudomonas sp. Os17, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19290..20000)
DNA (711bp) protein (237aa)
Uncharacterized protein n=1 Tax=Pseudomonas sp. CF161 RepID=S6ILJ6_9PSED rbh
Branched-chain amino acid permease {ECO:0000313|EMBL:BAQ74732.1}; TaxID=1500686 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. Os17.;"
hypothetical protein
S15_scaffold_5_curated_22
Pseudomonas protegens, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20126..20605)
DNA (480bp) protein (160aa)
Uncharacterized protein n=1 Tax=Pseudomonas protegens CHA0 RepID=R4R921_9PSED
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AAY92304.1}; TaxID=220664 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477).;"
S15_scaffold_5_curated_23
Pseudomonas protegens, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20686..22164)
DNA (1479bp) protein (493aa)
Uncharacterized protein n=1 Tax=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) RepID=Q4KC94_PSEF5 rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:AAY92303.1}; TaxID=220664 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477).;"
S15_scaffold_5_curated_24
Pseudomonas sp. St29, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22161..22838)
DNA (678bp) protein (226aa)
Uncharacterized protein n=1 Tax=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) RepID=Q4KC95_PSEF5 rbh
Uncharacterized protein {ECO:0000313|EMBL:BAQ81019.1}; TaxID=1500687 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. St29.;"
hypothetical protein rbh
S15_scaffold_5_curated_25
Pseudomonas sp. Os17, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23053..24468
DNA (1416bp) protein (472aa)
Transporter, major facilitator family n=2 Tax=Pseudomonas protegens RepID=Q4KC96_PSEF5 rbh
Major facilitator family transporter {ECO:0000313|EMBL:BAQ74728.1}; TaxID=1500686 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. Os17.;"
major facilitator family transporter rbh
S15_scaffold_5_curated_26
Pseudomonas sp. Os17, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24505..25836
DNA (1332bp) protein (444aa)
hypothetical protein n=1 Tax=Pseudomonas fluorescens RepID=UPI0002F96BA2 rbh
Uncharacterized protein {ECO:0000313|EMBL:BAQ74727.1}; TaxID=1500686 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. Os17.;"
hypothetical protein rbh
S15_scaffold_5_curated_27
unknown

Not on your lists

26236..26760
DNA (525bp) protein (175aa)

This feature has no annotations

S15_scaffold_5_curated_28
Pseudomonas sp. St29, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27166..27783
DNA (618bp) protein (206aa)
methyltransferase n=1 Tax=Pseudomonas fluorescens RepID=UPI000319851C rbh
Methyltransferase {ECO:0000313|EMBL:BAQ81016.1}; TaxID=1500687 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. St29.;"
methyltransferase rbh
S15_scaffold_5_curated_29
Pseudomonas sp. Os17, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27892..28371)
DNA (480bp) protein (160aa)
Uncharacterized protein n=1 Tax=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) RepID=Q4KCA2_PSEF5
Transporter {ECO:0000313|EMBL:BAQ74725.1}; TaxID=1500686 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. Os17.;"
hypothetical protein
S15_scaffold_5_curated_30
Pseudomonas sp. St29, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28371..29021)
DNA (651bp) protein (217aa)
SCO2-like protein n=2 Tax=Pseudomonas protegens RepID=R4RK02_9PSED rbh
Sco1/SenC family protein {ECO:0000313|EMBL:BAQ81014.1}; TaxID=1500687 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. St29.;"
SCO2-like protein rbh
Displaying items 1-30 of 342 in total

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