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S15_scaffold_978_curated

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Displaying 14 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
S15_scaffold_978_curated_1
Pseudomonas sp. St29, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(2..517)
DNA (516bp) protein (172aa)
tuf; elongation factor Tu (EC:3.6.5.3)
Elongation factor Tu n=1 Tax=Pseudomonas fulva (strain 12-X) RepID=F6AJ92_PSEF1 rbh
Elongation factor Tu {ECO:0000256|HAMAP-Rule:MF_00118, ECO:0000256|RuleBase:RU004061}; Short=EF-Tu {ECO:0000256|HAMAP-Rule:MF_00118};; TaxID=1500687 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. St29.;"
S15_scaffold_978_curated_2
Pseudomonas protegens, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(552..2699)
DNA (2148bp) protein (716aa)
Elongation factor G n=9 Tax=Pseudomonas RepID=EFG_PSEF5 rbh
Elongation factor G {ECO:0000255|HAMAP-Rule:MF_00054}; Short=EF-G {ECO:0000255|HAMAP-Rule:MF_00054};; TaxID=220664 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477).;"
fusA3; elongation factor G rbh
S15_scaffold_978_curated_3
Pseudomonas sp. MRSN12121, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(2730..3200)
DNA (471bp) protein (157aa)
30S ribosomal protein S7 n=12 Tax=Pseudomonas RepID=RS7_PSEF5 rbh
30S ribosomal protein S7
30S ribosomal protein S7 {ECO:0000256|HAMAP-Rule:MF_00480}; TaxID=1611770 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. MRSN12121.;"
S15_scaffold_978_curated_4
Pseudomonas sp. G5(2012), Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(3312..3683)
DNA (372bp) protein (124aa)
30S ribosomal protein S12 n=30 Tax=Pseudomonas RepID=RS12_PSEF5
rpsL; protein RpsL
30S ribosomal protein S12 {ECO:0000256|HAMAP-Rule:MF_00403, ECO:0000256|RuleBase:RU003623}; TaxID=1268068 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. G5(2012).;"
S15_scaffold_978_curated_5
Pseudomonas sp. Os17, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(3885..8084)
DNA (4200bp) protein (1400aa)
DNA-directed RNA polymerase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; Short=RNAP subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_01322};; RNA polymerase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; Transcriptase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; TaxID=1500686 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. Os17.;"
rpoC; DNA-directed RNA polymerase subunit beta (EC:2.7.7.6) rbh
DNA-directed RNA polymerase subunit beta' n=3 Tax=Pseudomonas fluorescens group RepID=RPOC_PSEF5 rbh
S15_scaffold_978_curated_6
Pseudomonas sp. Os17, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(8149..12222)
DNA (4074bp) protein (1358aa)
DNA-directed RNA polymerase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; Short=RNAP subunit beta {ECO:0000256|HAMAP-Rule:MF_01321};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_01321};; RNA polymerase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; Transcriptase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; TaxID=1500686 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. Os17.;"
rpoB; DNA-directed RNA polymerase subunit beta (EC:2.7.7.6) rbh
DNA-directed RNA polymerase subunit beta n=10 Tax=Pseudomonas RepID=RPOB_PSEF5 rbh
S15_scaffold_978_curated_7
Pseudomonas protegens, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(12444..12809)
DNA (366bp) protein (122aa)
50S ribosomal protein L7/L12 n=2 Tax=Pseudomonas protegens RepID=RL7_PSEF5
ribosomal protein L7/L12
50S ribosomal protein L7/L12 {ECO:0000255|HAMAP-Rule:MF_00368}; TaxID=220664 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477).;"
S15_scaffold_978_curated_8
Pseudomonas sp. Os17, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(12890..13390)
DNA (501bp) protein (167aa)
50S ribosomal protein L10 n=2 Tax=Pseudomonas protegens RepID=RL10_PSEF5 rbh
50S ribosomal protein L10 {ECO:0000256|HAMAP-Rule:MF_00362, ECO:0000256|RuleBase:RU003636}; TaxID=1500686 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. Os17.;"
rplJ; 50S ribosomal protein L10
S15_scaffold_978_curated_9
Pseudomonas sp. St29, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(13591..14286)
DNA (696bp) protein (232aa)
50S ribosomal protein L1 n=2 Tax=Pseudomonas protegens RepID=RL1_PSEF5 rbh
rplA; 50S ribosomal protein L1 rbh
50S ribosomal protein L1 {ECO:0000256|HAMAP-Rule:MF_01318}; TaxID=1500687 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. St29.;"
S15_scaffold_978_curated_10
Pseudomonas fluorescens, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(14286..14717)
DNA (432bp) protein (144aa)
50S ribosomal protein L11 n=23 Tax=Pseudomonas RepID=RL11_PSEF5
rplK; 50S ribosomal protein L11
50S ribosomal protein L11 {ECO:0000256|HAMAP-Rule:MF_00736, ECO:0000256|SAAS:SAAS00021680}; TaxID=1038923 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas fluorescens Q8r1-96.;"
S15_scaffold_978_curated_11
Pseudomonas savastanoi, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(14836..15315)
DNA (480bp) protein (160aa)
Transcription termination/antitermination protein NusG n=14 Tax=Pseudomonas RepID=D7I5T5_PSESS rbh
nusG; transcription antitermination protein NusG rbh
Transcription termination/antitermination protein NusG {ECO:0000256|HAMAP-Rule:MF_00948, ECO:0000256|SAAS:SAAS00078489}; TaxID=875329 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas savastanoi pv. glycinea str. B076.;"
S15_scaffold_978_curated_12
Pseudomonas sp. St29, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(15379..15747)
DNA (369bp) protein (123aa)
Protein translocase subunit SecE n=1 Tax=Pseudomonas sp. CF161 RepID=S6ISJ9_9PSED
Protein translocase subunit SecE {ECO:0000256|HAMAP-Rule:MF_00422}; TaxID=1500687 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. St29.;"
secE; preprotein translocase subunit SecE
S15_scaffold_978_curated_trna_1
unknown

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comp(15796..15868)
DNA (73bp)
transferRNA Trp
S15_scaffold_978_curated_13
unknown

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15893..15985
DNA (93bp) protein (31aa)

This feature has no annotations

Displaying 14 items

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