ggKbase home page

S15_scaffold_75_curated

Search features with annotation key words

Displaying items 1-30 of 191 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
S15_scaffold_75_curated_1
Pseudomonas sp. Os17, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2..1672)
DNA (1671bp) protein (557aa)
Outer membrane autotransporter n=1 Tax=Pseudomonas sp. CF161 RepID=S6IU07_9PSED rbh
Cell surface receptor IPT/TIG domain-containing protein {ECO:0000313|EMBL:BAQ75352.1}; TaxID=1500686 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. Os17.;"
IPT/TIG domain/outer membrane autotransporter barrel domain-containing protein
S15_scaffold_75_curated_2
Aeromonas salmonicida, Aeromonas, Aeromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1790..2326)
DNA (537bp) protein (179aa)
Acetyltransferase n=1 Tax=Pseudomonas sp. CF161 RepID=S6K0B6_9PSED rbh
GNAT family acetyltransferase {ECO:0000313|EMBL:KFN17611.1}; TaxID=645 species="Bacteria; Proteobacteria; Gammaproteobacteria; Aeromonadales; Aeromonadaceae; Aeromonas.;" source="Aeromonas salmonicida.;"
GNAT family acetyltransferase
S15_scaffold_75_curated_3
Aeromonas salmonicida, Aeromonas, Aeromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2323..2874)
DNA (552bp) protein (184aa)
Phage tail collar domain-containing protein n=1 Tax=Pseudomonas sp. CF161 RepID=S6KB44_9PSED rbh
Tail collar protein {ECO:0000313|EMBL:KFN17612.1}; TaxID=645 species="Bacteria; Proteobacteria; Gammaproteobacteria; Aeromonadales; Aeromonadaceae; Aeromonas.;" source="Aeromonas salmonicida.;"
hypothetical protein
S15_scaffold_75_curated_4
Aeromonas salmonicida, Aeromonas, Aeromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2904..3479)
DNA (576bp) protein (192aa)
Uncharacterized protein n=1 Tax=Pseudomonas sp. CF161 RepID=S6IPN3_9PSED rbh
Uncharacterized protein {ECO:0000313|EMBL:KFN17613.1}; TaxID=645 species="Bacteria; Proteobacteria; Gammaproteobacteria; Aeromonadales; Aeromonadaceae; Aeromonas.;" source="Aeromonas salmonicida.;"
hypothetical protein
S15_scaffold_75_curated_5
Aeromonas salmonicida, Aeromonas, Aeromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3515..4060)
DNA (546bp) protein (182aa)
Uncharacterized protein n=1 Tax=Pseudomonas sp. CF161 RepID=S6ILV7_9PSED rbh
Uncharacterized protein {ECO:0000313|EMBL:KFN17614.1}; TaxID=645 species="Bacteria; Proteobacteria; Gammaproteobacteria; Aeromonadales; Aeromonadaceae; Aeromonas.;" source="Aeromonas salmonicida.;"
phage tail collar domain-containing protein
S15_scaffold_75_curated_6
Pseudomonas sp. Os17, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4662..5795)
DNA (1134bp) protein (378aa)
Branched-chain amino acid ABC transporter, periplasmic branched-chain amino acid-binding protein n=2 Tax=Pseudomonas protegens RepID=Q4KAW5_PSEF5 rbh
leucine ABC transporter subunit substrate-binding protein LivK
Leucine ABC transporter subunit substrate-binding protein LivK {ECO:0000313|EMBL:BAQ75347.1}; TaxID=1500686 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. Os17.;"
S15_scaffold_75_curated_7
Pseudomonas sp. Os17, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5931..7190)
DNA (1260bp) protein (420aa)
megL; methionine gamma-lyase (EC:4.4.1.11) rbh
Methionine gamma-lyase n=1 Tax=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) RepID=Q4KAW6_PSEF5 rbh
Methionine gamma-lyase {ECO:0000313|EMBL:BAQ75346.1}; TaxID=1500686 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. Os17.;"
S15_scaffold_75_curated_8
Pseudomonas protegens, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7315..7785
DNA (471bp) protein (157aa)
Transcriptional regulator, AsnC family n=2 Tax=Pseudomonas protegens RepID=Q4KAW7_PSEF5
ybaO1; HTH-type transcriptional regulator YbaO
Transcriptional regulator, AsnC family {ECO:0000313|EMBL:AAY92780.1}; TaxID=220664 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477).;"
S15_scaffold_75_curated_9
Pseudomonas protegens, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7937..8446)
DNA (510bp) protein (170aa)
Flavin reductase domain protein n=2 Tax=Pseudomonas protegens RepID=Q4KAW8_PSEF5 rbh
flavin reductase domain-containing protein rbh
Flavin reductase domain protein {ECO:0000313|EMBL:AAY92779.1}; TaxID=220664 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477).;"
S15_scaffold_75_curated_10
Pseudomonas protegens, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8560..9597)
DNA (1038bp) protein (346aa)
metE2; putative methylcobalamin:homocysteine methyltransferase MetE (EC:2.1.1.-) rbh
Methionine synthase family protein, vitamin-B12 independent {ECO:0000313|EMBL:AAY92778.1}; EC=2.1.1.14 {ECO:0000313|EMBL:AAY92778.1};; TaxID=220664 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477).;"
5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase n=1 Tax=Pseudomonas fluorescens RepID=UPI0002E5F0F9 rbh
S15_scaffold_75_curated_11
Pseudomonas protegens, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9622..10605)
DNA (984bp) protein (328aa)
Uncharacterized protein n=1 Tax=Pseudomonas protegens CHA0 RepID=R4RLH0_9PSED rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:AAY92777.1}; TaxID=220664 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477).;"
S15_scaffold_75_curated_12
Pseudomonas protegens, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11072..12127
DNA (1056bp) protein (352aa)
AP endonuclease family 2 protein n=1 Tax=Pseudomonas protegens CHA0 RepID=R4RAD5_9PSED rbh
xylose isomerase domain-containing protein
AP endonuclease, family 2 {ECO:0000313|EMBL:AAY92774.1}; TaxID=220664 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477).;"
S15_scaffold_75_curated_13
Pseudomonas sp. St29, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12150..13037
DNA (888bp) protein (296aa)
soluble epoxide hydrolase (EC:3.3.2.10) rbh
alpha/beta hydrolase n=1 Tax=Pseudomonas fluorescens RepID=UPI0002EA6263 rbh
Alpha/beta hydrolase {ECO:0000313|EMBL:BAQ81538.1}; TaxID=1500687 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. St29.;"
S15_scaffold_75_curated_14
Pseudomonas protegens, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13180..13776
DNA (597bp) protein (199aa)
Transcriptional regulator, TetR family n=2 Tax=Pseudomonas protegens RepID=Q4KAX5_PSEF5 rbh
TetR family transcriptional regulator rbh
Transcriptional regulator, TetR family {ECO:0000313|EMBL:AAY92772.1}; TaxID=220664 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477).;"
S15_scaffold_75_curated_15
Pseudomonas sp. St29, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13937..15115
DNA (1179bp) protein (393aa)
Sugar efflux transporter B n=2 Tax=Pseudomonas protegens RepID=Q4KAX6_PSEF5 rbh
Arabinose transporter {ECO:0000313|EMBL:BAQ81536.1}; TaxID=1500687 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. St29.;"
sotB; putative sugar efflux transporter SotB rbh
S15_scaffold_75_curated_16
Pseudomonas fluorescens, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15423..16637)
DNA (1215bp) protein (405aa)
MFS transporter n=1 Tax=Pseudomonas fluorescens RepID=UPI0003115BCD rbh
major facilitator family transporter
FetF {ECO:0000313|EMBL:AFJ49123.1}; TaxID=294 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas fluorescens.;"
S15_scaffold_75_curated_17
Pseudomonas sp. St29, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16641..17471)
DNA (831bp) protein (277aa)
Iron-chelate uptake ABC transporter, FeCT family, ATP-binding protein n=1 Tax=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) RepID=Q4KAX8_PSEF5 rbh
FeCT family iron-chelate ABC transporter ATP-binding protein {ECO:0000313|EMBL:BAQ81534.1}; TaxID=1500687 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. St29.;"
FeCT family iron-chelate ABC transporter ATP-binding protein
S15_scaffold_75_curated_18
Pseudomonas protegens, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17468..18535)
DNA (1068bp) protein (356aa)
Iron-chelate uptake ABC transporter, FeCT family, permease protein n=1 Tax=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) RepID=Q4KAX9_PSEF5 rbh
ABC transporter
Iron-chelate uptake ABC transporter, FeCT family, permease protein {ECO:0000313|EMBL:AAY92768.1}; TaxID=220664 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477).;"
S15_scaffold_75_curated_19
Pseudomonas fluorescens, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18532..19665)
DNA (1134bp) protein (378aa)
Solute-binding periplasmic protein of iron/siderophore ABC transporter n=2 Tax=Pseudomonas fluorescens group RepID=R4RLF8_9PSED rbh
solute-binding periplasmic protein of iron/siderophore ABC transporter rbh
FetC {ECO:0000313|EMBL:AFJ49120.1}; TaxID=294 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas fluorescens.;"
S15_scaffold_75_curated_20
Pseudomonas fluorescens, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19652..20533)
DNA (882bp) protein (294aa)
PepSY-associated membrane protein n=2 Tax=Pseudomonas fluorescens group RepID=R4RLS5_9PSED rbh
PepSY-associated membrane protein rbh
FetB {ECO:0000313|EMBL:AFJ49119.1}; TaxID=294 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas fluorescens.;"
S15_scaffold_75_curated_21
Pseudomonas sp. Os17, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20541..22772)
DNA (2232bp) protein (744aa)
Ferrichrysobactin receptor n=2 Tax=Pseudomonas fluorescens group RepID=R4RHW1_9PSED rbh
TonB-dependent outermembrane enantio-pyochelin receptor {ECO:0000313|EMBL:BAQ75335.1}; TaxID=1500686 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. Os17.;"
fct6; ferrichrysobactin receptor rbh
S15_scaffold_75_curated_22
Pseudomonas sp. St29, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22916..23818)
DNA (903bp) protein (301aa)
Regulatory protein PchR n=1 Tax=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) RepID=Q4KAY3_PSEF5 rbh
Regulatory protein PchR {ECO:0000313|EMBL:BAQ81529.1}; TaxID=1500687 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. St29.;"
pchR; regulatory protein PchR
S15_scaffold_75_curated_23
Pseudomonas protegens, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24194..25861
DNA (1668bp) protein (556aa)
Salicyl-AMP ligase n=1 Tax=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) RepID=Q4KAY4_PSEF5 rbh
pchD; salicyl-AMP ligase rbh
Salicyl-AMP ligase {ECO:0000313|EMBL:AAY92763.1}; TaxID=220664 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477).;"
S15_scaffold_75_curated_24
Pseudomonas sp. Os17, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25848..27599
DNA (1752bp) protein (584aa)
Putative ABC transporter, permease/ATP-binding protein n=1 Tax=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) RepID=Q4KAY5_PSEF5 rbh
ABC transporter permease/ATP-binding protein {ECO:0000313|EMBL:BAQ75332.1}; TaxID=1500686 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. Os17.;"
pchH; ABC transporter permease/ATP-binding protein rbh
S15_scaffold_75_curated_25
Pseudomonas sp. St29, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27596..29359
DNA (1764bp) protein (588aa)
ABC transporter permease n=1 Tax=Pseudomonas fluorescens RepID=UPI00031116F0 rbh
ABC transporter permease/ATP-binding protein {ECO:0000313|EMBL:BAQ81526.1}; TaxID=1500687 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. St29.;"
pchI; ABC transporter permease/ATP-binding protein rbh
S15_scaffold_75_curated_26
Pseudomonas fluorescens, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29352..32822
DNA (3471bp) protein (1157aa)
High-molecular-weight protein n=2 Tax=Pseudomonas fluorescens group RepID=R4RHV7_9PSED rbh
PchE {ECO:0000313|EMBL:ABW70809.1}; TaxID=294 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas fluorescens.;"
irp2; high-molecular-weight protein rbh
S15_scaffold_75_curated_27
Pseudomonas fluorescens, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

32819..38239
DNA (5421bp) protein (1807aa)
enantio-pyochelin synthetase F n=1 Tax=Pseudomonas fluorescens RepID=UPI0002E16FFD rbh
PchF {ECO:0000313|EMBL:ABW70808.1}; TaxID=294 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas fluorescens.;"
irp1; high-molecular-weight protein rbh
S15_scaffold_75_curated_28
Pseudomonas fluorescens, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

38236..39351
DNA (1116bp) protein (372aa)
PchK n=2 Tax=Pseudomonas fluorescens group RepID=R4R7S7_9PSED rbh
pchK; saccharopine dehydrogenase PchK
PchK {ECO:0000313|EMBL:ABW70807.1}; TaxID=294 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas fluorescens.;"
S15_scaffold_75_curated_29
Pseudomonas sp. Os17, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

39348..40127
DNA (780bp) protein (260aa)
pchC; enantio-pyochelin biosynthetic protein PchC (EC:3.1.2.-) rbh
enantio-pyochelin biosynthetic protein PchC n=1 Tax=Pseudomonas fluorescens RepID=UPI00036F06CF rbh
Enantio-pyochelin biosynthetic protein PchC {ECO:0000313|EMBL:BAQ75327.1}; TaxID=1500686 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. Os17.;"
S15_scaffold_75_curated_30
Pseudomonas sp. St29, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

40100..40474
DNA (375bp) protein (125aa)
PchB n=1 Tax=Pseudomonas fluorescens RepID=A8U039_PSEFL
pchB; isochorismate-pyruvate lyase
Isochorismate-pyruvate lyase {ECO:0000313|EMBL:BAQ81521.1}; TaxID=1500687 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. St29.;"
Displaying items 1-30 of 191 in total

View Taxonomy