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S16_scaffold_399_curated

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Displaying items 1-30 of 33 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
S16_scaffold_399_curated_1
Stenotrophomonas sp. RIT309, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2..160)
DNA (159bp) protein (53aa)
hypothetical protein n=1 Tax=Stenotrophomonas maltophilia RepID=UPI0002F6082E
Cation transporter {ECO:0000313|EMBL:EZP42327.1}; TaxID=1470590 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas sp. RIT309.;"
czcD1; cation diffusion facilitator
S16_scaffold_399_curated_2
Stenotrophomonas sp. RIT309, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

298..990
DNA (693bp) protein (231aa)
Aspartate racemase n=2 Tax=Stenotrophomonas maltophilia RepID=B4SQG2_STRM5 rbh
Aspartate racemase {ECO:0000313|EMBL:EZP42326.1}; TaxID=1470590 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas sp. RIT309.;"
aspartate racemase rbh
S16_scaffold_399_curated_3
Stenotrophomonas sp. RIT309, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1042..1410)
DNA (369bp) protein (123aa)
Uncharacterized protein n=1 Tax=Stenotrophomonas maltophilia Ab55555 RepID=J7VPA4_STEMA
Uncharacterized protein {ECO:0000313|EMBL:EZP42325.1}; TaxID=1470590 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas sp. RIT309.;"
hypothetical protein
S16_scaffold_399_curated_4
Stenotrophomonas sp. RIT309, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1684..2193
DNA (510bp) protein (170aa)
Uncharacterized protein n=1 Tax=Stenotrophomonas maltophilia AU12-09 RepID=M5TJC3_STEMA
Uncharacterized protein {ECO:0000313|EMBL:EZP42324.1}; TaxID=1470590 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas sp. RIT309.;"
hypothetical protein
S16_scaffold_399_curated_5
Stenotrophomonas sp. RIT309, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2253..2606
DNA (354bp) protein (118aa)
Uncharacterized protein n=2 Tax=Stenotrophomonas maltophilia RepID=M3EYG2_STEMA
Putative transmembrane protein {ECO:0000313|EMBL:EZP42323.1}; TaxID=1470590 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas sp. RIT309.;"
transmembrane protein
S16_scaffold_399_curated_6
Stenotrophomonas sp. RIT309, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2603..3052
DNA (450bp) protein (150aa)
GCN5-related N-acetyltransferase n=1 Tax=Stenotrophomonas maltophilia SKK35 RepID=M5CPC9_STEMA
GCN5-related N-acetyltransferase {ECO:0000313|EMBL:EZP42322.1}; TaxID=1470590 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas sp. RIT309.;"
N-acetyltransferase GCN5
S16_scaffold_399_curated_7
Stenotrophomonas sp. RIT309, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3022..3363)
DNA (342bp) protein (114aa)
Protein-tyrosine phosphatase n=1 Tax=Stenotrophomonas maltophilia MF89 RepID=T5L5K2_STEMA
Protein-tyrosine phosphatase, low molecular weight {ECO:0000313|EMBL:EZP42321.1}; TaxID=1470590 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas sp. RIT309.;"
protein-tyrosine phosphatase, low molecular weight
S16_scaffold_399_curated_8
Stenotrophomonas sp. RIT309, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3357..3560)
DNA (204bp) protein (68aa)
Uncharacterized protein n=1 Tax=Stenotrophomonas maltophilia MF89 RepID=T5L7U4_STEMA
Uncharacterized protein {ECO:0000313|EMBL:EZP42320.1}; TaxID=1470590 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas sp. RIT309.;"
hypothetical protein
S16_scaffold_399_curated_trna_1
unknown

Not on your lists

comp(3682..3755)
DNA (74bp)
transferRNA Pro
S16_scaffold_399_curated_9
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3823..4179)
DNA (357bp) protein (119aa)
Transcriptional regulator, MerR family n=11 Tax=Stenotrophomonas RepID=B4SQG7_STRM5
MerR family transcriptional regulator
HTH-type transcriptional regulator glnR {ECO:0000313|EMBL:CCP17581.1}; TaxID=1118157 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas; Stenotrophomonas maltophilia group.;" source="Stenotrophomonas maltophilia RA8.;"
S16_scaffold_399_curated_10
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4160..4459)
DNA (300bp) protein (100aa)
Integration host factor subunit alpha n=11 Tax=Stenotrophomonas RepID=IHFA_STRM5
integration host factor subunit alpha
Integration host factor subunit alpha {ECO:0000256|HAMAP-Rule:MF_00380, ECO:0000256|RuleBase:RU004485}; Short=IHF-alpha {ECO:0000256|HAMAP-Rule:MF_00380};; TaxID=1451188 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas; Stenotrophomonas maltophilia group.;" source="Stenotrophomonas maltophilia M30.;"
S16_scaffold_399_curated_11
Stenotrophomonas sp. RIT309, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(4487..6895)
DNA (2409bp) protein (803aa)
Phenylalanine--tRNA ligase beta subunit {ECO:0000256|HAMAP-Rule:MF_00283, ECO:0000256|SAAS:SAAS00103829}; EC=6.1.1.20 {ECO:0000256|HAMAP-Rule:MF_00283, ECO:0000256|SAAS:SAAS00022425};; Phenylalanyl-tRNA synthetase beta subunit {ECO:0000256|HAMAP-Rule:MF_00283}; TaxID=1470590 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas sp. RIT309.;"
pheT; phenylalanyl-tRNA synthetase subunit beta (EC:6.1.1.20) rbh
Phenylalanine--tRNA ligase beta subunit n=1 Tax=Stenotrophomonas maltophilia (strain R551-3) RepID=B4SQG9_STRM5 rbh
S16_scaffold_399_curated_12
Stenotrophomonas sp. RIT309, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(6952..7947)
DNA (996bp) protein (332aa)
Phenylalanine--tRNA ligase alpha subunit {ECO:0000256|HAMAP-Rule:MF_00281, ECO:0000256|SAAS:SAAS00016813}; EC=6.1.1.20 {ECO:0000256|HAMAP-Rule:MF_00281, ECO:0000256|SAAS:SAAS00089474};; Phenylalanyl-tRNA synthetase alpha subunit {ECO:0000256|HAMAP-Rule:MF_00281}; TaxID=1470590 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas sp. RIT309.;"
Phenylalanine--tRNA ligase alpha subunit n=1 Tax=Stenotrophomonas maltophilia SKK35 RepID=M5CPD3_STEMA rbh
pheS; phenylalanyl-tRNA synthetase subunit alpha rbh
S16_scaffold_399_curated_13
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(8142..8501)
DNA (360bp) protein (120aa)
50S ribosomal protein L20 n=10 Tax=cellular organisms RepID=RL20_STRMK
rplT; 50S ribosomal protein L20
50S ribosomal protein L20 {ECO:0000256|HAMAP-Rule:MF_00382, ECO:0000256|RuleBase:RU000560}; TaxID=1118156 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas; Stenotrophomonas maltophilia group.;" source="Stenotrophomonas maltophilia SKK35.;"
S16_scaffold_399_curated_14
Xanthomonas axonopodis, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(8512..8709)
DNA (198bp) protein (66aa)
50S ribosomal protein L35 n=24 Tax=Xanthomonas RepID=RL35_XANAC
rpmI; probable 50S ribosomal protein L35
50S ribosomal protein L35 {ECO:0000256|HAMAP-Rule:MF_00514, ECO:0000256|RuleBase:RU000568}; TaxID=1304892 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas axonopodis Xac29-1.;"
S16_scaffold_399_curated_15
Stenotrophomonas sp. RIT309, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8983..9462)
DNA (480bp) protein (160aa)
Translation initiation factor IF-3 n=1 Tax=Stenotrophomonas maltophilia AU12-09 RepID=M5TUJ7_STEMA rbh
Translation initiation factor IF-3 {ECO:0000256|HAMAP-Rule:MF_00080, ECO:0000256|RuleBase:RU000646}; TaxID=1470590 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas sp. RIT309.;"
infC; translation initiation factor IF-3 rbh
S16_scaffold_399_curated_16
Stenotrophomonas sp. RIT309, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9575..11476)
DNA (1902bp) protein (634aa)
Threonine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00184, ECO:0000256|SAAS:SAAS00106033}; EC=6.1.1.3 {ECO:0000256|HAMAP-Rule:MF_00184, ECO:0000256|SAAS:SAAS00106033};; Threonyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00184}; TaxID=1470590 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas sp. RIT309.;"
Threonine--tRNA ligase n=1 Tax=Stenotrophomonas maltophilia (strain R551-3) RepID=SYT_STRM5 rbh
thrS; threonyl-tRNA synthetase rbh
S16_scaffold_399_curated_17
Stenotrophomonas sp. RIT309, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11896..12192
DNA (297bp) protein (99aa)
Membrane protein n=1 Tax=Stenotrophomonas maltophilia MF89 RepID=T5L7T0_STEMA
Membrane protein {ECO:0000313|EMBL:EZP47163.1}; TaxID=1470590 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas sp. RIT309.;"
hypothetical protein
S16_scaffold_399_curated_18
Stenotrophomonas sp. RIT309, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12192..12455
DNA (264bp) protein (88aa)
Uncharacterized protein n=1 Tax=Stenotrophomonas maltophilia AU12-09 RepID=M5TJK2_STEMA
Membrane protein {ECO:0000313|EMBL:EZP47164.1}; TaxID=1470590 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas sp. RIT309.;"
hypothetical protein
S16_scaffold_399_curated_19
Stenotrophomonas sp. RIT309, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12466..14025
DNA (1560bp) protein (520aa)
Putative iron-regulated membrane protein n=1 Tax=Stenotrophomonas maltophilia D457 RepID=I0KQY9_STEMA rbh
PepSY-associated TM helix domain-containing protein {ECO:0000313|EMBL:EZP47165.1}; TaxID=1470590 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas sp. RIT309.;"
iron-regulated membrane protein rbh
S16_scaffold_399_curated_20
Stenotrophomonas sp. RIT309, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14051..14443)
DNA (393bp) protein (131aa)
virulence protein n=1 Tax=Xanthomonadaceae RepID=UPI00029A33C0
Biphenyl-2,3-diol 1,2-dioxygenase III-related protein {ECO:0000313|EMBL:EZP47166.1}; TaxID=1470590 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas sp. RIT309.;"
biphenyl-2,3-diol 1,2-dioxygenase
S16_scaffold_399_curated_21
Stenotrophomonas sp. RIT309, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14547..15737)
DNA (1191bp) protein (397aa)
Chitinase A1 {ECO:0000313|EMBL:EZP47167.1}; EC=3.2.1.14 {ECO:0000313|EMBL:EZP47167.1};; TaxID=1470590 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas sp. RIT309.;"
Glycoside hydrolase family 18 n=1 Tax=Stenotrophomonas maltophilia (strain R551-3) RepID=B4SQH8_STRM5 rbh
glycoside hydrolase family protein rbh
S16_scaffold_399_curated_22
Stenotrophomonas sp. RIT309, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15913..16926
DNA (1014bp) protein (338aa)
Uncharacterized protein n=1 Tax=Stenotrophomonas maltophilia (strain R551-3) RepID=B4SQR5_STRM5 rbh
Tetratricopeptide repeat domain protein {ECO:0000313|EMBL:EZP47168.1}; TaxID=1470590 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas sp. RIT309.;"
hypothetical protein rbh
S16_scaffold_399_curated_23
Stenotrophomonas sp. RIT309, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17041..18105
DNA (1065bp) protein (355aa)
Beta-lactamase n=1 Tax=Stenotrophomonas sp. SKA14 RepID=B8L4J7_9GAMM rbh
Beta-lactamase {ECO:0000313|EMBL:EZP47169.1}; TaxID=1470590 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas sp. RIT309.;"
putative beta-lactamase
S16_scaffold_399_curated_24
Stenotrophomonas sp. RIT309, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18074..19639)
DNA (1566bp) protein (522aa)
Tetratricopeptide repeat domain protein n=1 Tax=Stenotrophomonas sp. SKA14 RepID=B8L4J6_9GAMM rbh
Tetratricopeptide repeat domain protein {ECO:0000313|EMBL:EZP47170.1}; TaxID=1470590 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas sp. RIT309.;"
hypothetical protein rbh
S16_scaffold_399_curated_25
Stenotrophomonas sp. RIT309, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19773..21881)
DNA (2109bp) protein (703aa)
Polyribonucleotide nucleotidyltransferase {ECO:0000256|HAMAP-Rule:MF_01595}; EC=2.7.7.8 {ECO:0000256|HAMAP-Rule:MF_01595};; Polynucleotide phosphorylase {ECO:0000256|HAMAP-Rule:MF_01595}; TaxID=1470590 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas sp. RIT309.;"
polynucleotide phosphorylase/polyadenylase (EC:2.7.7.8) rbh
Polyribonucleotide nucleotidyltransferase n=1 Tax=Stenotrophomonas maltophilia (strain R551-3) RepID=PNP_STRM5 rbh
S16_scaffold_399_curated_26
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(22030..22290)
DNA (261bp) protein (87aa)
30S ribosomal protein S15 n=6 Tax=Stenotrophomonas maltophilia RepID=RS15_STRM5
rpsO; 30S ribosomal protein S15
30S ribosomal protein S15 {ECO:0000255|HAMAP-Rule:MF_01343}; TaxID=391008 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas; Stenotrophomonas maltophilia group.;" source="Stenotrophomonas maltophilia (strain R551-3).;"
S16_scaffold_399_curated_27
Stenotrophomonas sp. RIT309, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22468..22743)
DNA (276bp) protein (92aa)
tRNA pseudouridine synthase B {ECO:0000256|HAMAP-Rule:MF_01080, ECO:0000256|SAAS:SAAS00043744}; EC=5.4.99.25 {ECO:0000256|HAMAP-Rule:MF_01080, ECO:0000256|SAAS:SAAS00043720};; tRNA pseudouridine(55) synthase {ECO:0000256|HAMAP-Rule:MF_01080}; tRNA pseudouridylate synthase {ECO:0000256|HAMAP-Rule:MF_01080}; tRNA-uridine isomerase {ECO:0000256|HAMAP-Rule:MF_01080}; TaxID=1470590 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas sp. RIT309.;"
tRNA pseudouridine synthase B n=1 Tax=Stenotrophomonas maltophilia SKK35 RepID=M5CNX7_STEMA
tRNA pseudouridine synthase B
S16_scaffold_399_curated_28
Stenotrophomonas sp. RIT309, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22722..23333)
DNA (612bp) protein (204aa)
tRNA pseudouridine synthase B {ECO:0000256|HAMAP-Rule:MF_01080, ECO:0000256|SAAS:SAAS00043744}; EC=5.4.99.25 {ECO:0000256|HAMAP-Rule:MF_01080, ECO:0000256|SAAS:SAAS00043720};; tRNA pseudouridine(55) synthase {ECO:0000256|HAMAP-Rule:MF_01080}; tRNA pseudouridylate synthase {ECO:0000256|HAMAP-Rule:MF_01080}; tRNA-uridine isomerase {ECO:0000256|HAMAP-Rule:MF_01080}; TaxID=1470590 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas sp. RIT309.;"
tRNA pseudouridine synthase B n=1 Tax=Stenotrophomonas sp. SKA14 RepID=B8L4J3_9GAMM
tRNA pseudouridine synthase B
S16_scaffold_399_curated_29
Stenotrophomonas sp. RIT309, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23443..23826)
DNA (384bp) protein (128aa)
ribosome-binding factor A n=1 Tax=Stenotrophomonas maltophilia RepID=UPI0003714F35
Ribosome-binding factor A {ECO:0000256|HAMAP-Rule:MF_00003, ECO:0000256|SAAS:SAAS00023386}; TaxID=1470590 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas sp. RIT309.;"
rbfA; ribosome-binding factor A
Displaying items 1-30 of 33 in total

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