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S16_scaffold_1015_curated

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Displaying 9 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
S16_scaffold_1015_curated_1
Stenotrophomonas sp. RIT309, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(3..149)
DNA (147bp) protein (49aa)
Threonylcarbamoyl-AMP synthase {ECO:0000256|HAMAP-Rule:MF_01852, ECO:0000256|SAAS:SAAS00012127}; Short=TC-AMP synthase {ECO:0000256|HAMAP-Rule:MF_01852};; EC=2.7.7.87 {ECO:0000256|HAMAP-Rule:MF_01852, ECO:0000256|SAAS:SAAS00012122};; L-threonylcarbamoyladenylate synthase {ECO:0000256|HAMAP-Rule:MF_01852}; t(6)A37 threonylcarbamoyladenosine biosynthesis protein TsaC {ECO:0000256|HAMAP-Rule:MF_01852}; tRNA threonylcarbamoyladenosine biosynthesis protein TsaC {ECO:0000256|HAMAP-Rule:MF_01852}; TaxID=1470590 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas sp. RIT309.;"
tRNA threonylcarbamoyladenosine biosynthesis protein RimN n=1 Tax=Stenotrophomonas maltophilia RepID=UPI0002E10E79
hypothetical protein
S16_scaffold_1015_curated_2
Stenotrophomonas sp. RIT309, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(271..2748)
DNA (2478bp) protein (826aa)
DNA topoisomerase 1 {ECO:0000256|HAMAP-Rule:MF_00952}; EC=5.99.1.2 {ECO:0000256|HAMAP-Rule:MF_00952};; DNA topoisomerase I {ECO:0000256|HAMAP-Rule:MF_00952}; TaxID=1470590 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas sp. RIT309.;"
topA; DNA topoisomerase I (EC:5.99.1.2) rbh
DNA topoisomerase 1 n=1 Tax=Stenotrophomonas maltophilia Ab55555 RepID=J7VSH2_STEMA rbh
S16_scaffold_1015_curated_3
Stenotrophomonas sp. RIT309, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(2971..3900)
DNA (930bp) protein (310aa)
membrane protein n=1 Tax=Stenotrophomonas maltophilia RepID=UPI0002F2A091 rbh
RDD domain-containing protein {ECO:0000313|EMBL:EZP44734.1}; TaxID=1470590 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas sp. RIT309.;"
hypothetical protein rbh
S16_scaffold_1015_curated_4
Stenotrophomonas sp. RIT309, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(3949..4683)
DNA (735bp) protein (245aa)
Fimbrial protein pilin n=1 Tax=Stenotrophomonas maltophilia (strain R551-3) RepID=B4SKI1_STRM5 rbh
Fimbrial protein {ECO:0000313|EMBL:EZP44735.1}; TaxID=1470590 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas sp. RIT309.;"
fimbrial protein pilin rbh
S16_scaffold_1015_curated_5
Stenotrophomonas sp. RIT309, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(4723..5196)
DNA (474bp) protein (158aa)
Protein Smg homolog n=3 Tax=Stenotrophomonas maltophilia RepID=G0K531_STEMA rbh
Protein Smg homolog {ECO:0000256|HAMAP-Rule:MF_00598}; TaxID=1470590 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas sp. RIT309.;"
protein smg rbh
S16_scaffold_1015_curated_6
Stenotrophomonas sp. RIT309, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5240..6367)
DNA (1128bp) protein (376aa)
DNA protecting protein DprA n=1 Tax=Stenotrophomonas maltophilia AU12-09 RepID=M5TGV3_STEMA rbh
DNA protecting protein DprA {ECO:0000313|EMBL:EZP44737.1}; TaxID=1470590 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas sp. RIT309.;"
DNA protecting protein DprA rbh
S16_scaffold_1015_curated_7
Stenotrophomonas sp. RIT309, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6500..7375)
DNA (876bp) protein (292aa)
Uncharacterized protein n=3 Tax=Stenotrophomonas maltophilia RepID=M3FDH0_STEMA rbh
Peptidoglycan-binding protein LysM {ECO:0000313|EMBL:EZP44738.1}; TaxID=1470590 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas sp. RIT309.;"
LysM family cell wall degradation protein rbh
S16_scaffold_1015_curated_8
Stenotrophomonas sp. RIT309, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7756..8268
DNA (513bp) protein (171aa)
Peptide deformylase {ECO:0000256|HAMAP-Rule:MF_00163, ECO:0000256|RuleBase:RU003335}; Short=PDF {ECO:0000256|HAMAP-Rule:MF_00163};; EC=3.5.1.88 {ECO:0000256|HAMAP-Rule:MF_00163, ECO:0000256|SAAS:SAAS00013131};; Polypeptide deformylase {ECO:0000256|HAMAP-Rule:MF_00163}; TaxID=1470590 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas sp. RIT309.;"
def; peptide deformylase (EC:3.5.1.88) rbh
Peptide deformylase n=2 Tax=Stenotrophomonas maltophilia RepID=DEF_STRM5 rbh
S16_scaffold_1015_curated_9
Stenotrophomonas sp. RIT309, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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8390..9313
DNA (924bp) protein (308aa)
Methionyl-tRNA formyltransferase {ECO:0000256|HAMAP-Rule:MF_00182, ECO:0000256|SAAS:SAAS00043680}; EC=2.1.2.9 {ECO:0000256|HAMAP-Rule:MF_00182, ECO:0000256|SAAS:SAAS00150580};; TaxID=1470590 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas sp. RIT309.;"
fmt; methionyl-tRNA formyltransferase (EC:2.1.2.9) rbh
methionyl-tRNA formyltransferase n=1 Tax=Stenotrophomonas maltophilia RepID=UPI000368CA83 rbh
Displaying 9 items

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