ggKbase home page

S16_scaffold_834_curated

Search features with annotation key words

Displaying 13 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
S16_scaffold_834_curated_1
Stenotrophomonas sp. RIT309, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1..195)
DNA (195bp) protein (65aa)
Uncharacterized protein n=1 Tax=Stenotrophomonas maltophilia (strain R551-3) RepID=B4SNB6_STRM5
Uncharacterized protein {ECO:0000313|EMBL:EZP45440.1}; TaxID=1470590 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas sp. RIT309.;"
hypothetical protein
S16_scaffold_834_curated_2
Stenotrophomonas sp. RIT309, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(517..1053)
DNA (537bp) protein (179aa)
Uncharacterized protein n=2 Tax=Stenotrophomonas maltophilia RepID=J7VU06_STEMA rbh
Uncharacterized protein {ECO:0000313|EMBL:EZP45441.1}; TaxID=1470590 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas sp. RIT309.;"
hypothetical protein rbh
S16_scaffold_834_curated_3
Stenotrophomonas sp. RIT309, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1444..1668)
DNA (225bp) protein (75aa)
hypothetical protein n=1 Tax=Pseudomonas geniculata RepID=UPI00029AD346
Uncharacterized protein {ECO:0000313|EMBL:EZP45442.1}; TaxID=1470590 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas sp. RIT309.;"
S16_scaffold_834_curated_4
Stenotrophomonas sp. RIT309, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1736..1987)
DNA (252bp) protein (84aa)
Putative lipoprotein n=1 Tax=Stenotrophomonas maltophilia (strain K279a) RepID=B2FJG6_STRMK
Putative lipoprotein {ECO:0000313|EMBL:EZP45443.1}; TaxID=1470590 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas sp. RIT309.;"
lipoprotein
S16_scaffold_834_curated_5
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2118..2636)
DNA (519bp) protein (173aa)
Conserved hypothetical exported protein n=1 Tax=Stenotrophomonas maltophilia (strain K279a) RepID=B2FJG7_STRMK rbh
hypothetical protein rbh
Conserved hypothetical exported protein {ECO:0000313|EMBL:CAQ46446.1}; TaxID=522373 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas; Stenotrophomonas maltophilia group.;" source="Stenotrophomonas maltophilia (strain K279a).;"
S16_scaffold_834_curated_6
Stenotrophomonas sp. RIT309, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2648..3805)
DNA (1158bp) protein (386aa)
Putative type IV secretion system transmembrane protein n=1 Tax=Stenotrophomonas maltophilia (strain K279a) RepID=B2FJG8_STRMK rbh
Putative type IV secretion system transmembrane protein {ECO:0000313|EMBL:EZP45445.1}; TaxID=1470590 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas sp. RIT309.;"
trwI; type IV secretion system transmembrane protein rbh
S16_scaffold_834_curated_7
Stenotrophomonas sp. RIT309, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3881..4711)
DNA (831bp) protein (277aa)
Conserved hypothetical exported protein n=1 Tax=Stenotrophomonas maltophilia (strain K279a) RepID=B2FJG9_STRMK rbh
Uncharacterized protein {ECO:0000313|EMBL:EZP45446.1}; TaxID=1470590 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas sp. RIT309.;"
hypothetical protein rbh
S16_scaffold_834_curated_8
Stenotrophomonas sp. RIT309, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4734..7181)
DNA (2448bp) protein (816aa)
Putative type IV secretion conjugal transfer protein n=1 Tax=Stenotrophomonas maltophilia (strain K279a) RepID=B2FJH0_STRMK rbh
Type IV secretion/conjugal transfer ATPase, VirB4 family {ECO:0000313|EMBL:EZP45447.1}; TaxID=1470590 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas sp. RIT309.;"
type IV secretion conjugal transfer protein rbh
S16_scaffold_834_curated_9
Stenotrophomonas sp. RIT309, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7266..7532)
DNA (267bp) protein (89aa)
Inner membrane protein forms channel for type IV secretion of T-DNA complex (VirB3) n=2 Tax=Stenotrophomonas maltophilia RepID=I0KQ25_STEMA
Type IV secretory pathway VirB3 family protein {ECO:0000313|EMBL:EZP45448.1}; TaxID=1470590 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas sp. RIT309.;"
inner membrane protein forms channel for type IV secretion of T-DNA complex (VirB3)
S16_scaffold_834_curated_10
Stenotrophomonas sp. RIT309, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7567..7992)
DNA (426bp) protein (142aa)
Putative type IV secretion system protein n=1 Tax=Stenotrophomonas maltophilia (strain K279a) RepID=B2FJH2_STRMK
Putative type IV secretion system protein {ECO:0000313|EMBL:EZP45449.1}; TaxID=1470590 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas sp. RIT309.;"
type IV secretion system protein
S16_scaffold_834_curated_11
Stenotrophomonas sp. RIT309, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8066..9037)
DNA (972bp) protein (324aa)
type VI secretion protein n=1 Tax=Stenotrophomonas maltophilia RepID=UPI00036AB61B rbh
Lytic transglycosylase {ECO:0000313|EMBL:EZP45450.1}; TaxID=1470590 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas sp. RIT309.;"
lytic transglycosylase rbh
S16_scaffold_834_curated_12
Stenotrophomonas sp. RIT309, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9041..10084)
DNA (1044bp) protein (348aa)
Putative type IV secretion system conjugal transfer protein n=1 Tax=Stenotrophomonas maltophilia (strain K279a) RepID=B2FJH4_STRMK rbh
P-type DNA transfer ATPase VirB11 {ECO:0000313|EMBL:EZP45451.1}; TaxID=1470590 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas sp. RIT309.;"
type IV secretion system conjugal transfer protein rbh
S16_scaffold_834_curated_13
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10177..10494
DNA (318bp) protein (106aa)
Thiamine biosynthesis protein ThiF (Fragment) n=1 Tax=mine drainage metagenome RepID=T1AI59_9ZZZZ
thiF; thiamine biosynthesis protein ThiF
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
Displaying 13 items

View Taxonomy