ggKbase home page

S16_scaffold_337_curated

Search features with annotation key words

Displaying 26 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
S16_scaffold_337_curated_1
Stenotrophomonas sp. RIT309, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3..587)
DNA (585bp) protein (195aa)
Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit B n=1 Tax=Stenotrophomonas maltophilia Ab55555 RepID=J7V6I1_STEMA rbh
Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit B {ECO:0000313|EMBL:EZP45302.1}; TaxID=1470590 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas sp. RIT309.;"
lpsJ; succinyl-CoA:3-ketoacid-coenzyme A transferase subunit B rbh
S16_scaffold_337_curated_2
Stenotrophomonas sp. RIT309, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(589..1320)
DNA (732bp) protein (244aa)
3-oxoacid CoA-transferase subunit A {ECO:0000313|EMBL:EZP45303.1}; EC=2.8.3.5 {ECO:0000313|EMBL:EZP45303.1};; TaxID=1470590 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas sp. RIT309.;"
3-oxoacid CoA-transferase subunit A (EC:2.8.3.5) rbh
Succinyl-CoA:3-ketoacid-CoA transferase n=1 Tax=Stenotrophomonas maltophilia MF89 RepID=T5KIU6_STEMA rbh
S16_scaffold_337_curated_3
Stenotrophomonas sp. RIT309, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1494..4112
DNA (2619bp) protein (873aa)
Helicase n=1 Tax=Stenotrophomonas maltophilia MF89 RepID=T5KIW4_STEMA rbh
Helicase {ECO:0000313|EMBL:EZP45304.1}; TaxID=1470590 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas sp. RIT309.;"
helicase rbh
S16_scaffold_337_curated_4
Stenotrophomonas sp. RIT309, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4059..5525)
DNA (1467bp) protein (489aa)
Uncharacterized protein n=1 Tax=Stenotrophomonas maltophilia (strain R551-3) RepID=B4SJ52_STRM5 rbh
Uncharacterized protein {ECO:0000313|EMBL:EZP45305.1}; TaxID=1470590 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas sp. RIT309.;"
hypothetical protein rbh
S16_scaffold_337_curated_5
Stenotrophomonas sp. RIT309, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5500..5916)
DNA (417bp) protein (139aa)
Uncharacterized protein n=1 Tax=Stenotrophomonas maltophilia RA8 RepID=M5D6D5_STEMA
Uncharacterized protein {ECO:0000313|EMBL:EZP45306.1}; TaxID=1470590 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas sp. RIT309.;"
hypothetical protein
S16_scaffold_337_curated_6
Stenotrophomonas sp. RIT309, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5977..6576)
DNA (600bp) protein (200aa)
Uncharacterized protein n=1 Tax=Stenotrophomonas maltophilia Ab55555 RepID=J7SXY4_STEMA rbh
Uncharacterized protein {ECO:0000313|EMBL:EZP45307.1}; TaxID=1470590 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas sp. RIT309.;"
hypothetical protein rbh
S16_scaffold_337_curated_7
Stenotrophomonas sp. RIT309, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6573..6974)
DNA (402bp) protein (134aa)
GtrA family protein n=2 Tax=Stenotrophomonas maltophilia RepID=B4SJ49_STRM5
GtrA family protein {ECO:0000313|EMBL:EZP45308.1}; TaxID=1470590 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas sp. RIT309.;"
GtrA family protein
S16_scaffold_337_curated_8
Stenotrophomonas sp. RIT309, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6952..7896)
DNA (945bp) protein (315aa)
Glycosyl transferase family 2 n=1 Tax=Stenotrophomonas maltophilia (strain R551-3) RepID=B4SJ48_STRM5 rbh
Dolichol-phosphate mannosyltransferase {ECO:0000313|EMBL:EZP45309.1}; TaxID=1470590 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas sp. RIT309.;"
family 2 glycosyl transferase rbh
S16_scaffold_337_curated_9
Stenotrophomonas sp. RIT309, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7907..8863)
DNA (957bp) protein (319aa)
dTDP-glucose 4,6-dehydratase n=1 Tax=Stenotrophomonas maltophilia RA8 RepID=M5CTK3_STEMA rbh
NAD-dependent epimerase/dehydratase {ECO:0000313|EMBL:EZP45310.1}; TaxID=1470590 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas sp. RIT309.;"
NAD-dependent epimerase/dehydratase rbh
S16_scaffold_337_curated_10
Stenotrophomonas sp. RIT309, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9027..9926)
DNA (900bp) protein (300aa)
dTDP-4-dehydrorhamnose reductase {ECO:0000313|EMBL:EZP45311.1}; EC=1.1.1.133 {ECO:0000313|EMBL:EZP45311.1};; TaxID=1470590 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas sp. RIT309.;"
dTDP-4-dehydrorhamnose reductase (EC:1.1.1.133) rbh
dTDP-4-dehydrorhamnose reductase n=1 Tax=Stenotrophomonas maltophilia JV3 RepID=G0JWA7_STEMA rbh
S16_scaffold_337_curated_11
Stenotrophomonas sp. RIT309, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9923..10480)
DNA (558bp) protein (186aa)
dTDP-4-dehydrorhamnose 3,5-epimerase n=1 Tax=Pseudomonas geniculata RepID=UPI00029B3000 rbh
dTDP-4-dehydrorhamnose 3,5-epimerase {ECO:0000313|EMBL:EZP45312.1}; TaxID=1470590 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas sp. RIT309.;"
rmlC; DTDP-dehydrorhamnose 3,5-epimerase rbh
S16_scaffold_337_curated_12
Stenotrophomonas sp. RIT309, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10477..11364)
DNA (888bp) protein (296aa)
Glucose-1-phosphate thymidylyltransferase {ECO:0000256|RuleBase:RU003706}; EC=2.7.7.24 {ECO:0000256|RuleBase:RU003706};; TaxID=1470590 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas sp. RIT309.;"
Glucose-1-phosphate thymidylyltransferase n=1 Tax=Stenotrophomonas maltophilia (strain R551-3) RepID=B4SJ41_STRM5 rbh
glucose-1-phosphate thymidylyltransferase rbh
S16_scaffold_337_curated_13
Stenotrophomonas sp. RIT309, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11379..12434)
DNA (1056bp) protein (352aa)
dTDP-glucose 4,6-dehydratase {ECO:0000256|RuleBase:RU004473}; EC=4.2.1.46 {ECO:0000256|RuleBase:RU004473};; TaxID=1470590 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas sp. RIT309.;"
rfbB; dTDP-glucose 4,6-dehydratase (EC:4.2.1.46) rbh
dTDP-glucose 4,6-dehydratase n=1 Tax=Stenotrophomonas maltophilia (strain K279a) RepID=B2FMP7_STRMK rbh
S16_scaffold_337_curated_14
Stenotrophomonas sp. RIT309, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12717..13463
DNA (747bp) protein (249aa)
Uncharacterized protein n=1 Tax=Stenotrophomonas maltophilia Ab55555 RepID=J7SXY1_STEMA rbh
Electron transfer flavoprotein alpha/beta-subunit {ECO:0000313|EMBL:EZP45315.1}; TaxID=1470590 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas sp. RIT309.;"
electron transfer flavoprotein alpha/beta-subunit rbh
S16_scaffold_337_curated_15
Stenotrophomonas sp. RIT309, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13463..14404
DNA (942bp) protein (314aa)
electron transfer flavoprotein subunit beta n=1 Tax=Pseudomonas geniculata RepID=UPI00029A64DA rbh
Electron transfer flavoprotein subunit alpha {ECO:0000313|EMBL:EZP45316.1}; TaxID=1470590 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas sp. RIT309.;"
etfA; electron transfer flavoprotein subunit alpha rbh
S16_scaffold_337_curated_16
Stenotrophomonas sp. RIT309, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14548..15906
DNA (1359bp) protein (453aa)
Phosphoglucomutase {ECO:0000313|EMBL:EZP45317.1}; EC=5.4.2.8 {ECO:0000313|EMBL:EZP45317.1};; TaxID=1470590 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas sp. RIT309.;"
Phosphohexose mutase n=1 Tax=Stenotrophomonas maltophilia Ab55555 RepID=J7V6G1_STEMA rbh
phosphohexose mutases rbh
S16_scaffold_337_curated_17
Stenotrophomonas sp. RIT309, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15921..17330
DNA (1410bp) protein (470aa)
manA; mannose-1-phosphate guanylyltransferase (EC:2.7.7.22) rbh
Mannose-1-phosphate guanylyltransferase n=1 Tax=Stenotrophomonas maltophilia RA8 RepID=M5CTX9_STEMA rbh
Phosphomannose isomerase/GDP-mannose pyrophosphorylase {ECO:0000313|EMBL:EZP45318.1}; TaxID=1470590 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas sp. RIT309.;"
S16_scaffold_337_curated_18
Stenotrophomonas sp. RIT309, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17334..18764
DNA (1431bp) protein (477aa)
UbiA prenyltransferase n=1 Tax=Stenotrophomonas maltophilia JV3 RepID=G0JW99_STEMA rbh
UbiA prenyltransferase {ECO:0000313|EMBL:EZP45319.1}; TaxID=1470590 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas sp. RIT309.;"
UbiA prenyltransferase rbh
S16_scaffold_337_curated_19
Stenotrophomonas sp. RIT309, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18785..19480)
DNA (696bp) protein (232aa)
tRNA (Mo5U34)-methyltransferase {ECO:0000313|EMBL:EZP45320.1}; EC=2.1.1.- {ECO:0000313|EMBL:EZP45320.1};; TaxID=1470590 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas sp. RIT309.;"
hypothetical protein n=1 Tax=Actinomycetospora chiangmaiensis RepID=UPI000374982D
methyltransferase type 11
S16_scaffold_337_curated_20
Stenotrophomonas sp. RIT309, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19658..20794)
DNA (1137bp) protein (379aa)
Uncharacterized protein n=1 Tax=Eubacterium plexicaudatum ASF492 RepID=N2AAB2_9FIRM
Glycosyl transferase group 1 {ECO:0000313|EMBL:EZP45321.1}; TaxID=1470590 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas sp. RIT309.;"
group 1 glycosyl transferase
S16_scaffold_337_curated_21
Stenotrophomonas sp. RIT309, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20798..21148)
DNA (351bp) protein (117aa)
Uncharacterized protein n=1 Tax=Caldilinea aerophila (strain DSM 14535 / JCM 11387 / NBRC 104270 / STL-6-O1) RepID=I0I8P2_CALAS
EamA-like transporter family protein {ECO:0000313|EMBL:EZP45322.1}; TaxID=1470590 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas sp. RIT309.;"
hypothetical protein
S16_scaffold_337_curated_22
Stenotrophomonas sp. RIT309, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21263..23509)
DNA (2247bp) protein (749aa)
Uncharacterized protein {ECO:0000313|EMBL:EZP45323.1}; TaxID=1470590 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas sp. RIT309.;"
S16_scaffold_337_curated_23
Stenotrophomonas sp. RIT309, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23693..24634)
DNA (942bp) protein (314aa)
UDP-glucose 4-epimerase {ECO:0000313|EMBL:EZP45324.1}; EC=1.1.1.187 {ECO:0000313|EMBL:EZP45324.1};; TaxID=1470590 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas sp. RIT309.;"
GDP-6-deoxy-D-lyxo-4-hexulose reductase n=1 Tax=Xylella fastidiosa 6c RepID=V8KG39_XYLFS rbh
GDP-6-deoxy-D-lyxo-4-hexulose reductase
S16_scaffold_337_curated_24
Stenotrophomonas sp. RIT309, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24618..25658)
DNA (1041bp) protein (347aa)
GDP-mannose 4,6-dehydratase {ECO:0000256|HAMAP-Rule:MF_00955}; EC=4.2.1.47 {ECO:0000256|HAMAP-Rule:MF_00955};; GDP-D-mannose dehydratase {ECO:0000256|HAMAP-Rule:MF_00955}; TaxID=1470590 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas sp. RIT309.;"
GDP-mannose 4,6-dehydratase n=1 Tax=Stenotrophomonas maltophilia Ab55555 RepID=J7V6F7_STEMA rbh
gmd; putative GDP-mannose 4,6-dehydratase
S16_scaffold_337_curated_25
Stenotrophomonas sp. RIT309, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25763..28279)
DNA (2517bp) protein (839aa)
Glycogen synthase {ECO:0000313|EMBL:EZP45326.1}; EC=2.4.1.21 {ECO:0000313|EMBL:EZP45326.1};; TaxID=1470590 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas sp. RIT309.;"
Bifunctional glycosyltransferase n=1 Tax=Xanthomonas axonopodis pv. malvacearum str. GSPB1386 RepID=K8G6B8_9XANT rbh
wbdA1; bifunctional glycosyltransferase rbh
S16_scaffold_337_curated_26
Stenotrophomonas sp. RIT309, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28279..30123)
DNA (1845bp) protein (615aa)
Methyltransferase domain protein n=1 Tax=Xanthomonas citri pv. mangiferaeindicae LMG 941 RepID=H8FCX0_XANCI rbh
Bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase {ECO:0000313|EMBL:EZP45327.1}; TaxID=1470590 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas sp. RIT309.;"
wxcB; protein kinase rbh
Displaying 26 items

View Taxonomy