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S18_scaffold_11_curated

Search features with annotation key words

Displaying items 1-30 of 279 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
S18_scaffold_11_curated_1
Pseudomonas stutzeri, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(1..222)
DNA (222bp) protein (74aa)
Carbamoyl-phosphate synthase (glutamine-hydrolyzing) {ECO:0000256|SAAS:SAAS00086116}; EC=6.3.5.5 {ECO:0000256|SAAS:SAAS00086116};; TaxID=316 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas stutzeri (Pseudomonas perfectomarina).;"
Carbamoyl-phosphate synthase large chain n=1 Tax=Pseudomonas stutzeri KOS6 RepID=K6CZ05_PSEST
carB; carbamoyl phosphate synthase large subunit
S18_scaffold_11_curated_2
Pseudomonas pseudoalcaligenes, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(259..1407)
DNA (1149bp) protein (383aa)
carA; carbamoyl-phosphate synthase, small subunit (EC:6.3.5.5)
Carbamoyl-phosphate synthase small chain {ECO:0000256|HAMAP-Rule:MF_01209}; EC=6.3.5.5 {ECO:0000256|HAMAP-Rule:MF_01209};; Carbamoyl-phosphate synthetase glutamine chain {ECO:0000256|HAMAP-Rule:MF_01209}; TaxID=330 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas; Pseudomonas oleovorans/pseudoalcaligenes group.;" source="Pseudomonas pseudoalcaligenes.;"
Carbamoyl-phosphate synthase small chain n=1 Tax=Pseudomonas pseudoalcaligenes CECT 5344 RepID=I7J1F6_PSEPS rbh
S18_scaffold_11_curated_3
Pseudomonas mendocina, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1598..2401)
DNA (804bp) protein (268aa)
4-hydroxy-tetrahydrodipicolinate reductase {ECO:0000256|HAMAP-Rule:MF_00102, ECO:0000256|SAAS:SAAS00018068}; Short=HTPA reductase {ECO:0000256|HAMAP-Rule:MF_00102};; EC=1.17.1.8 {ECO:0000256|HAMAP-Rule:MF_00102, ECO:0000256|SAAS:SAAS00018030};; TaxID=1390370 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas mendocina EGD-AQ5.;"
dihydrodipicolinate reductase (EC:1.3.1.26) rbh
dihydrodipicolinate reductase n=1 Tax=Pseudomonas alcaliphila RepID=UPI0002FF9A99 rbh
S18_scaffold_11_curated_4
Pseudomonas mendocina, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2479..3606)
DNA (1128bp) protein (376aa)
Chaperone protein DnaJ n=1 Tax=Pseudomonas mendocina (strain NK-01) RepID=F4DVW9_PSEMN rbh
chaperone protein DnaJ rbh
Chaperone protein DnaJ {ECO:0000256|HAMAP-Rule:MF_01152, ECO:0000256|SAAS:SAAS00053159}; TaxID=1001585 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas mendocina (strain NK-01).;"
S18_scaffold_11_curated_5
Pseudomonas mendocina, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3742..5658)
DNA (1917bp) protein (639aa)
Chaperone protein DnaK n=1 Tax=Pseudomonas mendocina (strain NK-01) RepID=F4DVX0_PSEMN rbh
molecular chaperone DnaK rbh
Chaperone protein DnaK {ECO:0000256|HAMAP-Rule:MF_00332}; HSP70 {ECO:0000256|HAMAP-Rule:MF_00332}; Heat shock 70 kDa protein {ECO:0000256|HAMAP-Rule:MF_00332}; Heat shock protein 70 {ECO:0000256|HAMAP-Rule:MF_00332}; TaxID=1001585 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas mendocina (strain NK-01).;"
S18_scaffold_11_curated_6
Pseudomonas mendocina, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5758..6327)
DNA (570bp) protein (190aa)
Protein GrpE n=2 Tax=Pseudomonas mendocina RepID=GRPE_PSEMY rbh
heat shock protein GrpE rbh
Protein GrpE {ECO:0000255|HAMAP-Rule:MF_01151}; HSP-70 cofactor {ECO:0000255|HAMAP-Rule:MF_01151}; TaxID=399739 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas mendocina (strain ymp).;"
S18_scaffold_11_curated_7
Pseudomonas mendocina, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6485..8161
DNA (1677bp) protein (559aa)
DNA repair protein RecN n=1 Tax=Pseudomonas mendocina (strain NK-01) RepID=F4DVX2_PSEMN rbh
DNA repair protein RecN rbh
DNA repair protein RecN {ECO:0000256|PIRNR:PIRNR003128}; Recombination protein N {ECO:0000256|PIRNR:PIRNR003128}; TaxID=1001585 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas mendocina (strain NK-01).;"
S18_scaffold_11_curated_8
Pseudomonas mendocina, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8267..8671)
DNA (405bp) protein (135aa)
Ferric uptake regulator family protein n=1 Tax=Pseudomonas mendocina (strain NK-01) RepID=F4DVX3_PSEMN
ferric uptake regulator family protein
Ferric uptake regulator family protein {ECO:0000313|EMBL:AEB59963.1}; TaxID=1001585 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas mendocina (strain NK-01).;"
S18_scaffold_11_curated_9
Pseudomonas mendocina, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8766..9284
DNA (519bp) protein (173aa)
Outer membrane protein assembly factor BamE n=1 Tax=Pseudomonas mendocina (strain NK-01) RepID=F4DVX4_PSEMN rbh
SmpA/OmlA domain-containing protein rbh
Outer membrane protein assembly factor BamE {ECO:0000256|HAMAP-Rule:MF_00925}; Flags: Precursor;; TaxID=1001585 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas mendocina (strain NK-01).;"
S18_scaffold_11_curated_10
Pseudomonas pseudoalcaligenes, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9360..9680)
DNA (321bp) protein (107aa)
Uncharacterized protein n=1 Tax=Pseudomonas pseudoalcaligenes CECT 5344 RepID=I7J1G2_PSEPS
hypothetical protein
UPF0125 protein PPSAL_0899 {ECO:0000256|HAMAP-Rule:MF_00460}; TaxID=330 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas; Pseudomonas oleovorans/pseudoalcaligenes group.;" source="Pseudomonas pseudoalcaligenes.;"
S18_scaffold_11_curated_11
Pseudomonas mendocina, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9673..10107)
DNA (435bp) protein (145aa)
Cyclase/dehydrase n=1 Tax=Pseudomonas mendocina (strain NK-01) RepID=F4DVX6_PSEMN
cyclase/dehydrase
Cyclase/dehydrase {ECO:0000313|EMBL:AEB59966.1}; TaxID=1001585 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas mendocina (strain NK-01).;"
S18_scaffold_11_curated_12
Pseudomonas mendocina, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10108..11511)
DNA (1404bp) protein (468aa)
Transporter n=1 Tax=Pseudomonas mendocina EGD-AQ5 RepID=U1SD54_PSEME rbh
Transporter {ECO:0000256|RuleBase:RU003732}; TaxID=1390370 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas mendocina EGD-AQ5.;"
sodium:neurotransmitter symporter rbh
S18_scaffold_11_curated_13
Pseudomonas pseudoalcaligenes, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11600..12121
DNA (522bp) protein (174aa)
SsrA-binding protein n=1 Tax=Pseudomonas pseudoalcaligenes CECT 5344 RepID=I7KAI1_PSEPS rbh
smpB; SsrA-binding protein rbh
SsrA-binding protein {ECO:0000256|HAMAP-Rule:MF_00023, ECO:0000256|SAAS:SAAS00023472}; TaxID=1182590 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas; Pseudomonas oleovorans/pseudoalcaligenes group.;" source="Pseudomonas pseudoalcaligenes CECT 5344.;"
S18_scaffold_11_curated_14
Pseudomonas mendocina, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12176..12943)
DNA (768bp) protein (256aa)
GntR family transcriptional regulator n=1 Tax=Pseudomonas mendocina (strain NK-01) RepID=F4DVX9_PSEMN rbh
GntR family transcriptional regulator rbh
GntR family transcriptional regulator {ECO:0000313|EMBL:AEB59969.1}; TaxID=1001585 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas mendocina (strain NK-01).;"
S18_scaffold_11_curated_15
Pseudomonas mendocina, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13239..14930
DNA (1692bp) protein (564aa)
lactate permease n=1 Tax=Pseudomonas mendocina RepID=UPI0003711354 rbh
L-lactate transport rbh
L-lactate transport {ECO:0000313|EMBL:AEB59970.1}; TaxID=1001585 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas mendocina (strain NK-01).;"
S18_scaffold_11_curated_16
Pseudomonas mendocina, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15015..16154
DNA (1140bp) protein (380aa)
L-lactate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_01559, ECO:0000256|SAAS:SAAS00019080}; EC=1.1.-.- {ECO:0000256|HAMAP-Rule:MF_01559, ECO:0000256|SAAS:SAAS00019079};; TaxID=1001585 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas mendocina (strain NK-01).;"
L-lactate dehydrogenase [cytochrome] n=1 Tax=Pseudomonas mendocina (strain NK-01) RepID=F4DVY1_PSEMN rbh
L-lactate dehydrogenase rbh
S18_scaffold_11_curated_17
Pseudomonas mendocina, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16159..17871
DNA (1713bp) protein (571aa)
D-lactate dehydrogenase {ECO:0000256|PIRNR:PIRNR000101}; EC=1.1.1.28 {ECO:0000256|PIRNR:PIRNR000101};; TaxID=1001585 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas mendocina (strain NK-01).;"
D-lactate dehydrogenase n=1 Tax=Pseudomonas mendocina DLHK RepID=J7UQF4_PSEME rbh
D-lactate dehydrogenase rbh
S18_scaffold_11_curated_18
Pseudomonas mendocina, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18071..20635)
DNA (2565bp) protein (855aa)
ATPase AAA-2 domain protein n=1 Tax=Pseudomonas mendocina (strain ymp) RepID=A4XYH1_PSEMY rbh
ATPase rbh
Chaperone protein ClpB {ECO:0000256|RuleBase:RU362034}; TaxID=399739 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas mendocina (strain ymp).;"
S18_scaffold_11_curated_19
Pseudomonas pseudoalcaligenes, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20755..21495)
DNA (741bp) protein (247aa)
nitroreductase (EC:1.-.-.-)
Nitroreductase n=1 Tax=Pseudomonas mendocina EGD-AQ5 RepID=U1U3X9_PSEME rbh
Nitroreductase {ECO:0000313|EMBL:KJU80732.1}; TaxID=330 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas; Pseudomonas oleovorans/pseudoalcaligenes group.;" source="Pseudomonas pseudoalcaligenes.;"
S18_scaffold_11_curated_20
Pseudomonas mendocina, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21623..22108)
DNA (486bp) protein (162aa)
glutathione peroxidase family protein (EC:1.11.1.9)
Glutathione peroxidase n=3 Tax=Pseudomonas aeruginosa group RepID=F4DWM3_PSEMN rbh
Glutathione peroxidase {ECO:0000256|RuleBase:RU000499}; TaxID=1001585 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas mendocina (strain NK-01).;"
S18_scaffold_11_curated_21
Pseudomonas mendocina, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22295..22780)
DNA (486bp) protein (162aa)
Peptidyl-prolyl cis-trans isomerase {ECO:0000256|RuleBase:RU003915, ECO:0000256|RuleBase:RU004231}; EC=5.2.1.8 {ECO:0000256|RuleBase:RU003915};; TaxID=399739 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas mendocina (strain ymp).;"
Peptidyl-prolyl cis-trans isomerase n=2 Tax=Pseudomonas mendocina RepID=A4XYH4_PSEMY rbh
FKBP-type peptidylprolyl isomerase rbh
S18_scaffold_11_curated_22
Pseudomonas mendocina, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23077..24261
DNA (1185bp) protein (395aa)
Acetate kinase {ECO:0000256|HAMAP-Rule:MF_00020}; EC=2.7.2.1 {ECO:0000256|HAMAP-Rule:MF_00020};; Acetokinase {ECO:0000256|HAMAP-Rule:MF_00020}; TaxID=1001585 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas mendocina (strain NK-01).;"
Acetate kinase n=1 Tax=Pseudomonas mendocina (strain NK-01) RepID=F4DWM5_PSEMN rbh
acetate kinase rbh
S18_scaffold_11_curated_23
Pseudomonas mendocina, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24271..26364
DNA (2094bp) protein (698aa)
Phosphate acetyltransferase {ECO:0000256|PIRNR:PIRNR006107}; EC=2.3.1.8 {ECO:0000256|PIRNR:PIRNR006107};; Phosphotransacetylase {ECO:0000256|PIRNR:PIRNR006107}; TaxID=1001585 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas mendocina (strain NK-01).;"
Phosphate acetyltransferase n=1 Tax=Pseudomonas mendocina (strain NK-01) RepID=F4DWM6_PSEMN rbh
phosphate acetyltransferase rbh
S18_scaffold_11_curated_24
Pseudomonas mendocina, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26662..27558
DNA (897bp) protein (299aa)
acyltransferase n=1 Tax=Pseudomonas mendocina RepID=UPI00037F89C2 rbh
putative acyltransferase rbh
Putative acyltransferase {ECO:0000313|EMBL:AEB59979.1}; TaxID=1001585 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas mendocina (strain NK-01).;"
S18_scaffold_11_curated_25
Pseudomonas mendocina, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27574..29751)
DNA (2178bp) protein (726aa)
diguanylate cyclase n=1 Tax=Pseudomonas mendocina RepID=UPI00038207E0 rbh
response regulator receiver modulated diguanylate cyclase/phosphodiesterase rbh
Response regulator receiver modulated diguanylate cyclase/phosphodiesterase {ECO:0000313|EMBL:AEB59980.1}; TaxID=1001585 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas mendocina (strain NK-01).;"
S18_scaffold_11_curated_26
Pseudomonas mendocina, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29767..33483)
DNA (3717bp) protein (1239aa)
sensor histidine kinase n=1 Tax=Pseudomonas alcaliphila RepID=UPI0002F86B93 rbh
Sensor histidine kinase {ECO:0000313|EMBL:ERH49739.1}; TaxID=1390370 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas mendocina EGD-AQ5.;"
multi-sensor hybrid histidine kinase rbh
S18_scaffold_11_curated_27
Pseudomonas pseudoalcaligenes, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(33727..34383)
DNA (657bp) protein (219aa)
membrane protein n=1 Tax=Pseudomonas alcaliphila RepID=UPI0002F8EE78 rbh
Membrane protein {ECO:0000313|EMBL:KJU80724.1}; TaxID=330 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas; Pseudomonas oleovorans/pseudoalcaligenes group.;" source="Pseudomonas pseudoalcaligenes.;"
OmpA/MotB domain-containing protein
S18_scaffold_11_curated_28
Pseudomonas mendocina, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(34525..35193)
DNA (669bp) protein (223aa)
OmpA/MotB domain-containing protein n=1 Tax=Pseudomonas mendocina (strain NK-01) RepID=F4DWN1_PSEMN rbh
OmpA/MotB domain-containing protein rbh
OmpA/MotB domain-containing protein {ECO:0000313|EMBL:AEB59983.1}; TaxID=1001585 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas mendocina (strain NK-01).;"
S18_scaffold_11_curated_29
Pseudomonas mendocina, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(35258..35899)
DNA (642bp) protein (214aa)
beta-lactamase n=1 Tax=Pseudomonas alcaliphila RepID=UPI00031B49ED rbh
beta-lactamase domain-containing protein rbh
Beta-lactamase domain-containing protein {ECO:0000313|EMBL:AEB59984.1}; TaxID=1001585 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas mendocina (strain NK-01).;"
S18_scaffold_11_curated_30
Pseudomonas fluorescens, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

36082..38448
DNA (2367bp) protein (789aa)
DEAD/DEAH box helicase n=1 Tax=Pseudomonas alcaliphila RepID=UPI0002F2BCEB rbh
restriction endonuclease
Restriction endonuclease {ECO:0000313|EMBL:AIG04736.1}; TaxID=294 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas fluorescens.;"
Displaying items 1-30 of 279 in total

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