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S18_scaffold_8_curated

Search features with annotation key words

Displaying items 1-30 of 287 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
S18_scaffold_8_curated_1
Pseudomonas mendocina, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1..645)
DNA (645bp) protein (215aa)
LysR family transcriptional regulator n=2 Tax=Pseudomonas RepID=J7UNJ4_PSEME rbh
LysR family transcriptional regulator {ECO:0000313|EMBL:ERH53581.1}; TaxID=1390370 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas mendocina EGD-AQ5.;"
LysR family transcriptional regulator rbh
S18_scaffold_8_curated_2
Pseudomonas mendocina, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

775..1617
DNA (843bp) protein (281aa)
Uncharacterized protein n=1 Tax=Pseudomonas mendocina (strain NK-01) RepID=F4DW67_PSEMN rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:AEB57385.1}; TaxID=1001585 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas mendocina (strain NK-01).;"
S18_scaffold_8_curated_3
Pseudomonas mendocina, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1738..3294)
DNA (1557bp) protein (519aa)
FAD-dependent pyridine nucleotide-disulfide oxidoreductase n=1 Tax=Pseudomonas mendocina (strain ymp) RepID=A4XRX3_PSEMY rbh
FAD-dependent pyridine nucleotide-disulfide oxidoreductase rbh
FAD-dependent pyridine nucleotide-disulfide oxidoreductase {ECO:0000313|EMBL:ABP84089.1}; TaxID=399739 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas mendocina (strain ymp).;"
S18_scaffold_8_curated_4
Pseudomonas mendocina, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3446..4009)
DNA (564bp) protein (188aa)
Peroxiredoxin n=1 Tax=Pseudomonas mendocina (strain NK-01) RepID=F4DW65_PSEMN rbh
peroxiredoxin rbh
Peroxiredoxin {ECO:0000313|EMBL:AEB57383.1}; TaxID=1001585 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas mendocina (strain NK-01).;"
S18_scaffold_8_curated_5
Pseudomonas mendocina, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4164..5126)
DNA (963bp) protein (321aa)
Alcohol dehydrogenase n=1 Tax=Pseudomonas mendocina (strain NK-01) RepID=F4DW64_PSEMN rbh
alcohol dehydrogenase rbh
Alcohol dehydrogenase {ECO:0000313|EMBL:AEB57382.1}; TaxID=1001585 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas mendocina (strain NK-01).;"
S18_scaffold_8_curated_6
Pseudomonas mendocina, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5255..7336
DNA (2082bp) protein (694aa)
Carboxyl-terminal protease n=1 Tax=Pseudomonas mendocina (strain NK-01) RepID=F4DW63_PSEMN rbh
carboxyl-terminal protease rbh
Carboxyl-terminal protease {ECO:0000313|EMBL:AEB57381.1}; TaxID=1001585 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas mendocina (strain NK-01).;"
S18_scaffold_8_curated_7
Pseudomonas mendocina, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7437..9191
DNA (1755bp) protein (585aa)
Diguanylate cyclase/phosphodiesterase n=1 Tax=Pseudomonas mendocina (strain NK-01) RepID=F4DVH4_PSEMN rbh
diguanylate cyclase/phosphodiesterase rbh
Diguanylate cyclase/phosphodiesterase {ECO:0000313|EMBL:AEB57379.1}; TaxID=1001585 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas mendocina (strain NK-01).;"
S18_scaffold_8_curated_8
Pseudomonas pseudoalcaligenes, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9180..9665)
DNA (486bp) protein (162aa)
Sel1 domain protein repeat-containing protein n=2 Tax=Pseudomonas mendocina RepID=A4XRW8_PSEMY
Uncharacterized protein {ECO:0000313|EMBL:EZH76900.1}; TaxID=1453503 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas; Pseudomonas oleovorans/pseudoalcaligenes group.;" source="Pseudomonas pseudoalcaligenes AD6.;"
Sel1 domain-containing protein
S18_scaffold_8_curated_9
Pseudomonas mendocina, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9658..10023)
DNA (366bp) protein (122aa)
Uncharacterized protein n=1 Tax=Pseudomonas mendocina (strain NK-01) RepID=F4DVH2_PSEMN
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEB57378.1}; TaxID=1001585 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas mendocina (strain NK-01).;"
S18_scaffold_8_curated_10
Pseudomonas mendocina, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10020..10343)
DNA (324bp) protein (108aa)
Cro/Cl family transcriptional regulator n=1 Tax=Pseudomonas mendocina EGD-AQ5 RepID=U1UEX7_PSEME
Cro/Cl family transcriptional regulator {ECO:0000313|EMBL:ERH53572.1}; TaxID=1390370 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas mendocina EGD-AQ5.;"
XRE family transcriptional regulator
S18_scaffold_8_curated_11
Pseudomonas mendocina, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10563..11006)
DNA (444bp) protein (148aa)
Uncharacterized protein n=1 Tax=Pseudomonas mendocina (strain NK-01) RepID=F4DVH0_PSEMN
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEB57376.1}; TaxID=1001585 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas mendocina (strain NK-01).;"
S18_scaffold_8_curated_12
Pseudomonas mendocina, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11330..12046)
DNA (717bp) protein (239aa)
Peptidyl-prolyl cis-trans isomerase {ECO:0000256|RuleBase:RU003915}; EC=5.2.1.8 {ECO:0000256|RuleBase:RU003915};; TaxID=1001585 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas mendocina (strain NK-01).;"
Peptidyl-prolyl cis-trans isomerase n=1 Tax=Pseudomonas mendocina (strain NK-01) RepID=F4DVG9_PSEMN rbh
FKBP-type peptidylprolyl isomerase rbh
S18_scaffold_8_curated_trna_6
unknown

Not on your lists

comp(12237..12310)
DNA (74bp)
transferRNA Asp
S18_scaffold_8_curated_trna_5
unknown

Not on your lists

comp(12329..12401)
DNA (73bp)
transferRNA Val
S18_scaffold_8_curated_13
Pseudomonas mendocina, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12707..13627
DNA (921bp) protein (307aa)
Recombination-associated protein RdgC n=2 Tax=Pseudomonas mendocina RepID=F4DVG8_PSEMN rbh
recombination associated protein rbh
Recombination-associated protein RdgC {ECO:0000256|HAMAP-Rule:MF_00194, ECO:0000256|SAAS:SAAS00073315}; TaxID=1390370 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas mendocina EGD-AQ5.;"
S18_scaffold_8_curated_14
Pseudomonas mendocina, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13837..15660)
DNA (1824bp) protein (608aa)
Phosphogluconate dehydratase {ECO:0000313|EMBL:ERH53568.1}; EC=4.2.1.12 {ECO:0000313|EMBL:ERH53568.1};; TaxID=1390370 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas mendocina EGD-AQ5.;"
phosphogluconate dehydratase n=1 Tax=Pseudomonas mendocina RepID=UPI0003826316 rbh
phosphogluconate dehydratase rbh
S18_scaffold_8_curated_15
Pseudomonas pseudoalcaligenes, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15791..16792
DNA (1002bp) protein (334aa)
Glyceraldehyde-3-phosphate dehydrogenase {ECO:0000256|RuleBase:RU361160}; EC=1.2.1.- {ECO:0000256|RuleBase:RU361160};; TaxID=1453503 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas; Pseudomonas oleovorans/pseudoalcaligenes group.;" source="Pseudomonas pseudoalcaligenes AD6.;"
gapA; glyceraldehyde-3-phosphate dehydrogenase, type I (EC:1.2.1.12)
glyceraldehyde-3-phosphate dehydrogenase n=1 Tax=Pseudomonas alcaliphila RepID=UPI0002EFEAEC rbh
S18_scaffold_8_curated_16
Pseudomonas mendocina, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16805..17269
DNA (465bp) protein (155aa)
Methylglyoxal synthase {ECO:0000256|HAMAP-Rule:MF_00549, ECO:0000256|SAAS:SAAS00089917}; Short=MGS {ECO:0000256|HAMAP-Rule:MF_00549};; EC=4.2.3.3 {ECO:0000256|HAMAP-Rule:MF_00549, ECO:0000256|SAAS:SAAS00089921};; TaxID=1001585 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas mendocina (strain NK-01).;"
Methylglyoxal synthase n=1 Tax=Pseudomonas mendocina (strain NK-01) RepID=F4DVG5_PSEMN rbh
methylglyoxal synthase rbh
S18_scaffold_8_curated_17
Pseudomonas mendocina, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17680..18171)
DNA (492bp) protein (164aa)
Peptidyl-tRNA hydrolase domain protein n=1 Tax=Pseudomonas mendocina (strain NK-01) RepID=F4DVG4_PSEMN
peptidyl-tRNA hydrolase domain-containing protein
Peptidyl-tRNA hydrolase domain protein {ECO:0000313|EMBL:AEB57370.1}; TaxID=1001585 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas mendocina (strain NK-01).;"
S18_scaffold_8_curated_18
Pseudomonas mendocina, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18224..19288
DNA (1065bp) protein (355aa)
Uncharacterized protein n=1 Tax=Pseudomonas pseudoalcaligenes CECT 5344 RepID=I7IXX9_PSEPS rbh
membrane-bound metal-dependent hydrolase rbh
Membrane-bound metal-dependent hydrolase {ECO:0000313|EMBL:AEB57369.1}; TaxID=1001585 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas mendocina (strain NK-01).;"
S18_scaffold_8_curated_19
Pseudomonas mendocina, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19332..21167
DNA (1836bp) protein (612aa)
multidrug ABC transporter ATP-binding protein n=1 Tax=Pseudomonas mendocina RepID=UPI00036C2CAA rbh
Multidrug ABC transporter ATP-binding protein {ECO:0000313|EMBL:ERH53563.1}; TaxID=1390370 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas mendocina EGD-AQ5.;"
ABC transporter rbh
S18_scaffold_8_curated_20
Pseudomonas mendocina, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21227..22552)
DNA (1326bp) protein (442aa)
DEAD/DEAH box helicase domain-containing protein n=1 Tax=Pseudomonas mendocina (strain NK-01) RepID=F4DVG1_PSEMN rbh
DEAD/DEAH box helicase rbh
DEAD/DEAH box helicase domain-containing protein {ECO:0000313|EMBL:AEB57367.1}; TaxID=1001585 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas mendocina (strain NK-01).;"
S18_scaffold_8_curated_21
Pseudomonas mendocina, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22752..23162
DNA (411bp) protein (137aa)
Uncharacterized protein n=1 Tax=Pseudomonas mendocina (strain NK-01) RepID=F4DVG0_PSEMN
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEB57366.1}; TaxID=1001585 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas mendocina (strain NK-01).;"
S18_scaffold_8_curated_22
Pseudomonas mendocina, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23248..23826
DNA (579bp) protein (193aa)
Deaminase-reductase domain-containing protein n=1 Tax=Pseudomonas mendocina (strain NK-01) RepID=F4DVF9_PSEMN rbh
deaminase-reductase domain-containing protein rbh
Deaminase-reductase domain-containing protein {ECO:0000313|EMBL:AEB57364.1}; TaxID=1001585 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas mendocina (strain NK-01).;"
S18_scaffold_8_curated_23
Pseudomonas pseudoalcaligenes, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23827..24720)
DNA (894bp) protein (298aa)
chemotaxis protein n=1 Tax=Pseudomonas mendocina RepID=UPI00035F6443 rbh
Chemotaxis protein {ECO:0000313|EMBL:EZH76915.1}; TaxID=1453503 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas; Pseudomonas oleovorans/pseudoalcaligenes group.;" source="Pseudomonas pseudoalcaligenes AD6.;"
transporter DMT superfamily protein rbh
S18_scaffold_8_curated_24
Pseudomonas pseudoalcaligenes, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24720..25592)
DNA (873bp) protein (291aa)
membrane protein n=1 Tax=Pseudomonas alcaliphila RepID=UPI0003196027 rbh
Membrane protein {ECO:0000313|EMBL:KJU76855.1}; TaxID=330 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas; Pseudomonas oleovorans/pseudoalcaligenes group.;" source="Pseudomonas pseudoalcaligenes.;"
carboxylate/amino acid/amine transporter
S18_scaffold_8_curated_25
Pseudomonas mendocina, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25756..26355)
DNA (600bp) protein (200aa)
FMN-dependent NADH-azoreductase {ECO:0000256|HAMAP-Rule:MF_01216}; EC=1.7.-.- {ECO:0000256|HAMAP-Rule:MF_01216};; Azo-dye reductase {ECO:0000256|HAMAP-Rule:MF_01216}; FMN-dependent NADH-azo compound oxidoreductase {ECO:0000256|HAMAP-Rule:MF_01216}; TaxID=1001585 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas mendocina (strain NK-01).;"
FMN-dependent NADH-azoreductase n=1 Tax=Pseudomonas mendocina (strain NK-01) RepID=F4DVF6_PSEMN rbh
NAD(P)H dehydrogenase rbh
S18_scaffold_8_curated_26
Pseudomonas mendocina, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26492..26806)
DNA (315bp) protein (105aa)
3-phosphoglycerate kinase n=1 Tax=Pseudomonas mendocina RepID=UPI00036AF754
3-phosphoglycerate kinase {ECO:0000313|EMBL:ERH54182.1}; TaxID=1390370 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas mendocina EGD-AQ5.;"
hypothetical protein
S18_scaffold_8_curated_27
Pseudomonas mendocina, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26865..27791
DNA (927bp) protein (309aa)
LysR family transcriptional regulator n=1 Tax=Pseudomonas mendocina RepID=UPI00036902E9 rbh
LysR family transcriptional regulator rbh
LysR family transcriptional regulator {ECO:0000313|EMBL:AEB57361.1}; TaxID=1001585 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas mendocina (strain NK-01).;"
S18_scaffold_8_curated_28
Pseudomonas pseudoalcaligenes, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27802..28599
DNA (798bp) protein (266aa)
MhpC; 3-oxoadipate enol-lactonase (EC:3.1.1.24)
3-oxoadipate enol-lactonase {ECO:0000313|EMBL:CDM41618.1}; EC=3.1.1.24 {ECO:0000313|EMBL:CDM41618.1};; TaxID=1182590 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas; Pseudomonas oleovorans/pseudoalcaligenes group.;" source="Pseudomonas pseudoalcaligenes CECT 5344.;"
3-oxoadipate enol-lactonase n=1 Tax=Pseudomonas mendocina RepID=UPI000376BA41 rbh
Displaying items 1-30 of 287 in total

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