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S2_scaffold_150_curated

Search features with annotation key words

Displaying items 1-30 of 93 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
S2_scaffold_150_curated_1
Youngiibacter fragilis, Youngiibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3..959)
DNA (957bp) protein (319aa)
Recombinase n=1 Tax=Youngiibacter fragilis 232.1 RepID=V7IAD3_9CLOT
Recombinase {ECO:0000313|EMBL:ETA82304.1}; TaxID=994573 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Youngiibacter.;" source="Youngiibacter fragilis 232.1.;"
resolvase domain-containing protein
S2_scaffold_150_curated_2
Alkaliphilus metalliredigens, Alkaliphilus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1021..1236)
DNA (216bp) protein (72aa)
Putative uncharacterized protein n=1 Tax=Alkaliphilus metalliredigens (strain QYMF) RepID=A6TV72_ALKMQ
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABR50090.1}; TaxID=293826 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Alkaliphilus.;" source="Alkaliphilus metalliredigens (strain QYMF).;"
S2_scaffold_150_curated_3
Clostridium sp. BNL1100, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1302..3332)
DNA (2031bp) protein (677aa)
DNA polymerase n=1 Tax=Listeria innocua FSL S4-378 RepID=E3YZT6_LISIO rbh
DNA polymerase I family protein
DNA polymerase I family protein with 3'-5'-exonuclease and polymerase domains {ECO:0000313|EMBL:AEY67689.1}; TaxID=755731 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. BNL1100.;"
S2_scaffold_150_curated_4
Clostridium sp. BNL1100, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3316..3867)
DNA (552bp) protein (184aa)
Phage-associated protein n=1 Tax=Listeria innocua FSL S4-378 RepID=E3YZT7_LISIO rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:AEY67690.1}; TaxID=755731 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. BNL1100.;"
S2_scaffold_150_curated_5
Clostridium sp. BNL1100, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3873..5009)
DNA (1137bp) protein (379aa)
Phage-associated protein n=1 Tax=Listeria innocua FSL S4-378 RepID=E3YZT8_LISIO rbh
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEY67691.1}; TaxID=755731 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. BNL1100.;"
S2_scaffold_150_curated_6
Clostridium sp. BNL1100, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5002..5319)
DNA (318bp) protein (106aa)
rRNA biogenesis protein Rrp5, putative n=1 Tax=Listeria innocua FSL S4-378 RepID=E3YZT9_LISIO
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEY67692.1}; TaxID=755731 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. BNL1100.;"
S2_scaffold_150_curated_7
Clostridium sp. BNL1100, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5294..5512)
DNA (219bp) protein (73aa)
Uncharacterized protein n=1 Tax=Listeria innocua FSL S4-378 RepID=E3YZU0_LISIO
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEY67693.1}; TaxID=755731 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. BNL1100.;"
S2_scaffold_150_curated_8
Atopobium minutum, Atopobium, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(5652..6590)
DNA (939bp) protein (313aa)
hypothetical protein n=1 Tax=Allofustis seminis RepID=UPI00035E9D06 rbh
Uncharacterized protein {ECO:0000313|EMBL:EMZ41925.1}; TaxID=997872 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Atopobiaceae; Atopobium.;" source="Atopobium minutum 10063974.;"
glycosyl hydrolase family 25
S2_scaffold_150_curated_9
Eubacterium sp. CAG:202, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6593..7003)
DNA (411bp) protein (137aa)
holin n=1 Tax=Allofustis seminis RepID=UPI00037F4D26
Toxin secretion/phage lysis holin {ECO:0000313|EMBL:CDC01701.1}; TaxID=1262884 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:202.;"
toxin secretion/phage lysis holin
S2_scaffold_150_curated_10
Clostridium bornimense, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7064..9532)
DNA (2469bp) protein (823aa)
Glycosyl hydrolases family 18 (EC:3.2.1.-)
Glycosyl hydrolases family 18 {ECO:0000313|EMBL:CDM67794.1}; EC=3.2.1.- {ECO:0000313|EMBL:CDM67794.1};; TaxID=1216932 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium bornimense.;"
glycosyl hydrolase n=1 Tax=Allofustis seminis RepID=UPI0003643917 rbh
S2_scaffold_150_curated_11
Enterococcus faecium, Enterococcus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(9532..10116)
DNA (585bp) protein (195aa)
hypothetical protein n=1 Tax=Allofustis seminis RepID=UPI000380FA47 rbh
Uncharacterized protein {ECO:0000313|EMBL:EJX87754.1}; TaxID=1134824 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Enterococcaceae; Enterococcus.;" source="Enterococcus faecium ERV26.;"
hypothetical protein
S2_scaffold_150_curated_12
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10319..12844)
DNA (2526bp) protein (842aa)
hypothetical protein n=1 Tax=Allofustis seminis RepID=UPI00036EE230 rbh
phage minor structural protein, N-terminal region rbh
Phage minor structural protein, N-terminal region {ECO:0000313|EMBL:CBL33604.1}; TaxID=717961 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum V10Sc8a.;"
S2_scaffold_150_curated_13
Clostridium sp. CAG:242, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12849..13625)
DNA (777bp) protein (259aa)
tail protein n=1 Tax=Allofustis seminis RepID=UPI00036E5316 rbh
Phage tail protein {ECO:0000313|EMBL:CDA79304.1}; TaxID=1262783 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:242.;"
Phage tail protein rbh
S2_scaffold_150_curated_14
Clostridium cellulovorans, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13638..16244)
DNA (2607bp) protein (869aa)
hypothetical protein n=1 Tax=Allofustis seminis RepID=UPI00037C4868 rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:ADL53630.1}; TaxID=573061 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium cellulovorans (strain ATCC 35296 / DSM 3052 / OCM 3 /; 743B).;"
S2_scaffold_150_curated_15
Ruminococcus sp. CAG:579, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16450..16833)
DNA (384bp) protein (128aa)
Uncharacterized protein n=1 Tax=Listeria innocua FSL S4-378 RepID=E3YZU8_LISIO
Uncharacterized protein {ECO:0000313|EMBL:CDA71299.1}; TaxID=1262963 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:579.;"
hypothetical protein
S2_scaffold_150_curated_16
Eubacterium sp. CAG:786, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16847..17431)
DNA (585bp) protein (195aa)
Phi13 family phage major tail protein n=1 Tax=Listeria innocua FSL S4-378 RepID=E3YZU9_LISIO rbh
Phi13 family phage major tail protein {ECO:0000313|EMBL:CCY17247.1}; TaxID=1262893 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:786.;"
phi13 family phage major tail protein
S2_scaffold_150_curated_17
Clostridium bornimense, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17435..17776)
DNA (342bp) protein (114aa)
Uncharacterized protein n=1 Tax=Listeria innocua FSL S4-378 RepID=E3YZV0_LISIO
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CDM67787.1}; TaxID=1216932 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium bornimense.;"
S2_scaffold_150_curated_18
Ruminococcus sp. CAG:579, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17773..18204)
DNA (432bp) protein (144aa)
hypothetical protein n=1 Tax=Allofustis seminis RepID=UPI00037DAEA4
Phage protein HK97 gp10 family {ECO:0000313|EMBL:CDA71303.1}; TaxID=1262963 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:579.;"
hypothetical protein
S2_scaffold_150_curated_19
Ruminococcus sp. CAG:579, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18191..18517)
DNA (327bp) protein (109aa)
Phage head-tail adaptor, putative n=1 Tax=Listeria innocua FSL S4-378 RepID=E3YZV1_LISIO
Phage head-tail adaptor putative {ECO:0000313|EMBL:CDA71305.1}; TaxID=1262963 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:579.;"
phage head-tail adaptor
S2_scaffold_150_curated_20
Eubacterium acidaminophilum, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18535..18843)
DNA (309bp) protein (103aa)
hypothetical protein n=1 Tax=Allofustis seminis RepID=UPI0003731DAA
putative phage protein
Putative phage protein {ECO:0000313|EMBL:AHM55838.1}; TaxID=1286171 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium acidaminophilum DSM 3953.;"
S2_scaffold_150_curated_21
Eubacterium acidaminophilum, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18868..19092)
DNA (225bp) protein (75aa)
Putative uncharacterized protein id=4072755 bin=GWF2_Clostridiales_38_85 species=Listeria innocua genus=Listeria taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWF2_Clostridiales_38_85 organism_group=Firmicute organism_desc=a212
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AHM55837.1}; TaxID=1286171 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium acidaminophilum DSM 3953.;"
S2_scaffold_150_curated_22
Eubacterium siraeum CAG:80, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19105..20301)
DNA (1197bp) protein (399aa)
Phage major capsid protein, HK97 family n=1 Tax=Listeria innocua FSL S4-378 RepID=E3YZV3_LISIO rbh
Phage major capsid protein HK97 family {ECO:0000313|EMBL:CDC46995.1}; TaxID=1263080 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium siraeum CAG:80.;"
Phage major capsid protein HK97 family
S2_scaffold_150_curated_23
Subdoligranulum sp. 4_3_54A2FAA, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20318..20929)
DNA (612bp) protein (204aa)
peptidase S14 n=1 Tax=Allofustis seminis RepID=UPI00038066D2 rbh
ATP-dependent Clp protease proteolytic subunit {ECO:0000256|RuleBase:RU003567}; TaxID=665956 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum sp. 4_3_54A2FAA.;"
protease subunit of ATP-dependent protease
S2_scaffold_150_curated_24
Subdoligranulum sp. 4_3_54A2FAA, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20985..22307)
DNA (1323bp) protein (441aa)
histone H1 n=1 Tax=Allofustis seminis RepID=UPI000374C84E rbh
HK97 family phage portal protein {ECO:0000313|EMBL:EHL74379.1}; TaxID=665956 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum sp. 4_3_54A2FAA.;"
phage portal protein, HK97 family rbh
S2_scaffold_150_curated_25
Erysipelotrichaceae bacterium 5_2_54FAA, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(22323..23888)
DNA (1566bp) protein (522aa)
hypothetical protein n=1 Tax=Allofustis seminis RepID=UPI000366D7B8 rbh
Uncharacterized protein {ECO:0000313|EMBL:EFE46520.2}; TaxID=552396 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae.;" source="Erysipelotrichaceae bacterium 5_2_54FAA.;"
putative phage terminase, large subunit
S2_scaffold_150_curated_26
Alkaliphilus metalliredigens, Alkaliphilus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24031..24255)
DNA (225bp) protein (75aa)
Putative uncharacterized protein n=1 Tax=Alkaliphilus metalliredigens (strain QYMF) RepID=A6TV98_ALKMQ
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABR50116.1}; TaxID=293826 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Alkaliphilus.;" source="Alkaliphilus metalliredigens (strain QYMF).;"
S2_scaffold_150_curated_27
Alkaliphilus metalliredigens, Alkaliphilus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24271..24627)
DNA (357bp) protein (119aa)
Putative uncharacterized protein n=1 Tax=Alkaliphilus metalliredigens (strain QYMF) RepID=A6TV99_ALKMQ
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABR50117.1}; TaxID=293826 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Alkaliphilus.;" source="Alkaliphilus metalliredigens (strain QYMF).;"
S2_scaffold_150_curated_28
Eubacterium acidaminophilum, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24740..25051)
DNA (312bp) protein (104aa)
Putative uncharacterized protein n=1 Tax=Alkaliphilus metalliredigens (strain QYMF) RepID=A6TVA0_ALKMQ
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AHM55883.1}; TaxID=1286171 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium acidaminophilum DSM 3953.;"
S2_scaffold_150_curated_29
Alkaliphilus metalliredigens, Alkaliphilus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25280..25954)
DNA (675bp) protein (225aa)
Virulence-related protein n=1 Tax=Alkaliphilus metalliredigens (strain QYMF) RepID=A6TVA2_ALKMQ rbh
virulence-like protein rbh
Virulence-related protein {ECO:0000313|EMBL:ABR50120.1}; TaxID=293826 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Alkaliphilus.;" source="Alkaliphilus metalliredigens (strain QYMF).;"
S2_scaffold_150_curated_30
Youngiibacter fragilis, Youngiibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26037..27269)
DNA (1233bp) protein (411aa)
Transcriptional regulator n=1 Tax=Youngiibacter fragilis 232.1 RepID=V7I5S0_9CLOT rbh
Transcriptional regulator {ECO:0000313|EMBL:ETA80544.1}; TaxID=994573 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Youngiibacter.;" source="Youngiibacter fragilis 232.1.;"
DNA methylase N-4/N-6 domain protein
Displaying items 1-30 of 93 in total

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