ggKbase home page

S2_scaffold_1185_curated

Search features with annotation key words

Displaying 18 items
Loading...
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
S2_scaffold_1185_curated_1
Sphingobium lucknowense, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(53..856)
DNA (804bp) protein (268aa)
hypothetical protein n=1 Tax=Mesorhizobium sp. WSM4349 RepID=UPI0003812407 rbh
Transposase {ECO:0000313|EMBL:KER37417.1}; TaxID=1450518 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium lucknowense F2.;"
transposase rbh
S2_scaffold_1185_curated_2
Bradyrhizobium oligotrophicum, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(889..1155)
DNA (267bp) protein (89aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium oligotrophicum S58 RepID=M4ZDV0_9BRAD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAM92002.1}; TaxID=1245469 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium oligotrophicum S58.;"
S2_scaffold_1185_curated_3
Mesorhizobium sp. LNHC232B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1538..2773
DNA (1236bp) protein (412aa)
UPI0003CF6A34 related cluster n=1 Tax=unknown RepID=UPI0003CF6A34 rbh
Transposase {ECO:0000313|EMBL:ESY59945.1}; TaxID=1287243 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC232B00.;"
transposase IS116/IS110/IS902 family protein rbh
S2_scaffold_1185_curated_4
GWF2_OD1_45_11, Parcubacteria, Bacteria

Not on your lists

comp(3054..4277)
DNA (1224bp) protein (408aa)
Uncharacterized protein id=3493259 bin=GWC2_Planctomycetes_45_44 species=Clostridium leptum genus=Clostridium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_Planctomycetes_45_44 organism_group=Planctomycetes organism_desc=Novel; good rbh
Uncharacterized protein {ECO:0000313|EMBL:KKT91172.1}; TaxID=1618973 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWF2_45_11.;"
hypothetical protein
S2_scaffold_1185_curated_5
bacterium UASB270, Bacteria

Not on your lists

comp(4311..5303)
DNA (993bp) protein (331aa)
Periplasmic binding protein/LacI transcriptional regulator {ECO:0000313|EMBL:GAK59248.1}; TaxID=1499967 species="Bacteria.;" source="bacterium UASB270.;"
Transcriptional regulator, LacI family id=2576802 bin=GWC2_Spirochaete_52_13 species=unknown genus=Thermoanaerobacter taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_Spirochaete_52_13 organism_group=Spirochaetes
transcriptional regulator, LacI family
S2_scaffold_1185_curated_6
Runella slithyformis, Runella, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(5396..6310)
DNA (915bp) protein (305aa)
Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Runella slithyformis (strain ATCC 29530 / DSM 19594 / LMG 11500 / NCIMB 11436 / LSU 4) RepID=F8EH45_RUNSL
periplasmic binding protein/LacI transcriptional regulator
Periplasmic binding protein/LacI transcriptional regulator {ECO:0000313|EMBL:AEI47073.1}; Flags: Precursor;; TaxID=761193 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Runella.;" source="Runella slithyformis (strain ATCC 29530 / DSM 19594 / LMG 11500 /; NCIMB 11436 / LSU 4).;"
S2_scaffold_1185_curated_7
Geobacillus sp. Y4.1MC1, Geobacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(6367..7353)
DNA (987bp) protein (329aa)
Inner-membrane translocator n=2 Tax=Geobacillus RepID=E3IG14_GEOS0 rbh
sugar ABC transporter permease rbh
Inner-membrane translocator {ECO:0000313|EMBL:ADP74913.1}; TaxID=581103 species="Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Geobacillus.;" source="Geobacillus sp. (strain Y4.1MC1).;"
S2_scaffold_1185_curated_8
Paenibacillus darwinianus, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(7367..8866)
DNA (1500bp) protein (500aa)
Monosaccharide-transporting ATPase {ECO:0000256|SAAS:SAAS00041637}; EC=3.6.3.17 {ECO:0000256|SAAS:SAAS00041637};; TaxID=1380763 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus.;" source="Paenibacillus darwinianus.;"
hypothetical protein n=1 Tax=Cohnella laeviribosi RepID=UPI00037E9049 rbh
rbsA; ribose ABC transporter ATP-binding protein rbh
S2_scaffold_1185_curated_9
Methylocystis sp. SC2, Methylocystis, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9185..9544)
DNA (360bp) protein (120aa)
Uncharacterized protein n=1 Tax=Methylocystis sp. (strain SC2) RepID=J7Q8S5_METSZ
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCJ07272.1}; TaxID=187303 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylocystaceae; Methylocystis.;" source="Methylocystis sp. (strain SC2).;"
S2_scaffold_1185_curated_10
Pandoraea sp. RB-44, Pandoraea, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9630..11246
DNA (1617bp) protein (539aa)
serine recombinase n=1 Tax=Ruegeria conchae RepID=UPI000237A9AA rbh
serine recombinase
Serine recombinase {ECO:0000313|EMBL:AHB77225.1}; TaxID=1380774 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Pandoraea.;" source="Pandoraea sp. RB-44.;"
S2_scaffold_1185_curated_11
Magnetospirillum magneticum, Magnetospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11246..12133
DNA (888bp) protein (296aa)
Predicted transcriptional regulator n=1 Tax=Magnetospirillum magneticum (strain AMB-1 / ATCC 700264) RepID=Q2W825_MAGSA rbh
transcriptional regulator rbh
Predicted transcriptional regulator {ECO:0000313|EMBL:BAE50000.1}; TaxID=342108 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Magnetospirillum.;" source="Magnetospirillum magneticum (strain AMB-1 / ATCC 700264).;"
S2_scaffold_1185_curated_12
Magnetospirillum magneticum, Magnetospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12136..13035
DNA (900bp) protein (300aa)
Predicted transcriptional regulator n=1 Tax=Magnetospirillum magneticum (strain AMB-1 / ATCC 700264) RepID=Q2W826_MAGSA rbh
transcriptional regulator rbh
Predicted transcriptional regulator {ECO:0000313|EMBL:BAE49999.1}; TaxID=342108 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Magnetospirillum.;" source="Magnetospirillum magneticum (strain AMB-1 / ATCC 700264).;"
S2_scaffold_1185_curated_13
unknown

Not on your lists

comp(13337..15112)
DNA (1776bp) protein (592aa)

This feature has no annotations

S2_scaffold_1185_curated_14
Afipia sp. P52-10, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15529..15912
DNA (384bp) protein (128aa)
Uncharacterized protein n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QF73_NITHX
Uncharacterized protein {ECO:0000313|EMBL:ETR74909.1}; TaxID=1429916 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. P52-10.;"
hypothetical protein
S2_scaffold_1185_curated_15
Candidatus Scalindua brodae, Candidatus Scalindua, Candidatus Brocadiales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

15935..16360
DNA (426bp) protein (142aa)
Uncharacterized protein n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1Q419_9BACT
Uncharacterized protein {ECO:0000313|EMBL:KHE94100.1}; TaxID=237368 species="Bacteria; Planctomycetes; Planctomycetia; Candidatus Brocadiales; Candidatus Brocadiaceae; Candidatus Scalindua.;" source="Candidatus Scalindua brodae.;"
heat shock protein Hsp20
S2_scaffold_1185_curated_16
RIFOXYA1_FULL_Bacteriovorax_36_14_curated, Bacteroivoracaceae, Bdellovibrionales, Bdellovibrio, Bacteria

Not on your lists

16387..16782
DNA (396bp) protein (132aa)
Uncharacterized protein n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1Q418_9BACT
heat shock protein Hsp20
Tax=RIFOXYA1_FULL_Bacteriovorax_36_14_curated
S2_scaffold_1185_curated_17
Hyphomicrobium nitrativorans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16899..17249
DNA (351bp) protein (117aa)
hypothetical protein n=1 Tax=Methylocystis rosea RepID=UPI00036ADA86
DNA methylase N-4
DNA methylase N-4 {ECO:0000313|EMBL:AHB47832.1}; TaxID=1029756 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium nitrativorans NL23.;"
S2_scaffold_1185_curated_18
Sphingobium lucknowense, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17322..17588
DNA (267bp) protein (89aa)
Transposase IS3 n=1 Tax=Sphingobium sp. HDIP04 RepID=T0HJF1_9SPHN
Transposase {ECO:0000313|EMBL:KER37418.1}; TaxID=1450518 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium lucknowense F2.;"
transposase IS3/IS911 family protein
Displaying 18 items

View Taxonomy