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S20_scaffold_529_curated

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Displaying 25 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
S20_scaffold_529_curated_trna_4
unknown

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comp(79..151)
DNA (73bp)
transferRNA Thr
S20_scaffold_529_curated_trna_3
unknown

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comp(165..238)
DNA (74bp)
transferRNA Gly
S20_scaffold_529_curated_trna_2
unknown

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comp(354..436)
DNA (83bp)
transferRNA Tyr
S20_scaffold_529_curated_trna_1
unknown

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comp(492..564)
DNA (73bp)
transferRNA Thr
S20_scaffold_529_curated_1
Geobacter soli, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(661..2511)
DNA (1851bp) protein (617aa)
UPF0313 protein GSU2873 n=2 Tax=Geobacter sulfurreducens RepID=Y2873_GEOSL rbh
UPF0313 protein SE37_11670 {ECO:0000256|HAMAP-Rule:MF_01251}; TaxID=1510391 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter soli.;"
radical SAM domain-containing iron-sulfur cluster-binding oxidoreductase rbh
S20_scaffold_529_curated_2
Geobacter uraniireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(2581..3621)
DNA (1041bp) protein (347aa)
argC; N-acetyl-gamma-glutamyl-phosphate reductase (EC:1.2.1.38) rbh
N-acetyl-gamma-glutamyl-phosphate reductase {ECO:0000255|HAMAP-Rule:MF_00150}; Short=AGPR {ECO:0000255|HAMAP-Rule:MF_00150};; EC=1.2.1.38 {ECO:0000255|HAMAP-Rule:MF_00150};; N-acetyl-glutamate semialdehyde dehydrogenase {ECO:0000255|HAMAP-Rule:MF_00150}; Short=NAGSA dehydrogenase {ECO:0000255|HAMAP-Rule:MF_00150};; TaxID=351605 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter uraniireducens (strain Rf4) (Geobacter uraniumreducens).;"
N-acetyl-gamma-glutamyl-phosphate reductase n=1 Tax=Geobacter uraniireducens (strain Rf4) RepID=ARGC_GEOUR rbh
S20_scaffold_529_curated_3
Geobacter uraniireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(3742..4134)
DNA (393bp) protein (131aa)
30S ribosomal protein S9 n=1 Tax=Geobacter uraniireducens (strain Rf4) RepID=RS9_GEOUR
rpsI; 30S ribosomal protein S9
30S ribosomal protein S9 {ECO:0000255|HAMAP-Rule:MF_00532}; TaxID=351605 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter uraniireducens (strain Rf4) (Geobacter uraniumreducens).;"
S20_scaffold_529_curated_4
Geobacter uraniireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(4173..4601)
DNA (429bp) protein (143aa)
50S ribosomal protein L13 n=1 Tax=Geobacter sp. (strain M21) RepID=RL13_GEOSM
rplM; 50S ribosomal protein L13
50S ribosomal protein L13 {ECO:0000256|HAMAP-Rule:MF_01366, ECO:0000256|SAAS:SAAS00083943}; TaxID=351605 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter uraniireducens (strain Rf4) (Geobacter uraniumreducens).;"
S20_scaffold_529_curated_5
Geobacter metallireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4692..5447)
DNA (756bp) protein (252aa)
tRNA pseudouridine synthase A {ECO:0000256|HAMAP-Rule:MF_00171}; EC=5.4.99.12 {ECO:0000256|HAMAP-Rule:MF_00171};; tRNA pseudouridine(38-40) synthase {ECO:0000256|HAMAP-Rule:MF_00171}; tRNA pseudouridylate synthase I {ECO:0000256|HAMAP-Rule:MF_00171}; tRNA-uridine isomerase I {ECO:0000256|HAMAP-Rule:MF_00171}; TaxID=269799 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210).;"
tRNA pseudouridine synthase A n=2 Tax=Geobacter metallireducens RepID=Q39Y26_GEOMG rbh
truA; tRNA pseudouridine synthase A rbh
S20_scaffold_529_curated_6
Geobacter bemidjiensis, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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5545..5913
DNA (369bp) protein (123aa)
Uncharacterized protein n=2 Tax=Bacteria RepID=B5E7X2_GEOBB
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACH38508.1}; TaxID=404380 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter bemidjiensis (strain Bem / ATCC BAA-1014 / DSM 16622).;"
S20_scaffold_529_curated_7
Geobacter lovleyi, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(5988..6746)
DNA (759bp) protein (253aa)
Rhodanese domain protein n=1 Tax=Geobacter lovleyi (strain ATCC BAA-1151 / DSM 17278 / SZ) RepID=B3E3F5_GEOLS
rhodanese
Rhodanese domain protein {ECO:0000313|EMBL:ACD95774.1}; Flags: Precursor;; TaxID=398767 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter lovleyi (strain ATCC BAA-1151 / DSM 17278 / SZ).;"
S20_scaffold_529_curated_8
Geobacter sulfurreducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(6747..7328)
DNA (582bp) protein (194aa)
Three rhodanese homology domain protein, selenocysteine-containing n=2 Tax=Geobacter sulfurreducens RepID=E1PTD0_GEOSK
hypothetical protein
Three rhodanese homology domain protein, selenocysteine-containing {ECO:0000313|EMBL:AAR34257.1}; TaxID=243231 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter sulfurreducens (strain ATCC 51573 / DSM 12127 / PCA).;"
S20_scaffold_529_curated_9
Geobacter sp. OR-1, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(7602..8675)
DNA (1074bp) protein (358aa)
Aspartate-semialdehyde dehydrogenase {ECO:0000256|HAMAP-Rule:MF_02121, ECO:0000256|RuleBase:RU004501}; Short=ASA dehydrogenase {ECO:0000256|HAMAP-Rule:MF_02121};; Short=ASADH {ECO:0000256|HAMAP-Rule:MF_02121};; EC=1.2.1.11 {ECO:0000256|HAMAP-Rule:MF_02121, ECO:0000256|RuleBase:RU004501};; Aspartate-beta-semialdehyde dehydrogenase {ECO:0000256|HAMAP-Rule:MF_02121}; TaxID=1266765 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter sp. OR-1.;"
Aspartate-semialdehyde dehydrogenase n=2 Tax=Geobacter sulfurreducens RepID=D7AMW2_GEOSK rbh
asd; aspartate-4-semialdehyde dehydrogenase rbh
S20_scaffold_529_curated_10
Geobacter pickeringii, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8738..9760)
DNA (1023bp) protein (341aa)
aspartate-semialdehyde dehydrogenase (EC:1.2.1.11)
Aspartate-semialdehyde dehydrogenase {ECO:0000256|HAMAP-Rule:MF_02121, ECO:0000313|EMBL:AJE02513.1}; Short=ASA dehydrogenase {ECO:0000256|HAMAP-Rule:MF_02121};; Short=ASADH {ECO:0000256|HAMAP-Rule:MF_02121};; EC=1.2.1.11 {ECO:0000256|HAMAP-Rule:MF_02121, ECO:0000313|EMBL:AJE02513.1};; Aspartate-beta-semialdehyde dehydrogenase {ECO:0000256|HAMAP-Rule:MF_02121}; TaxID=345632 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter pickeringii.;"
Aspartate-semialdehyde dehydrogenase n=2 Tax=Geobacter metallireducens RepID=Q39Y27_GEOMG rbh
S20_scaffold_529_curated_11
Geobacter daltonii, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9910..10998)
DNA (1089bp) protein (363aa)
3-isopropylmalate dehydrogenase (EC:1.1.1.85) rbh
3-isopropylmalate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_01033, ECO:0000256|RuleBase:RU004445}; EC=1.1.1.85 {ECO:0000256|HAMAP-Rule:MF_01033, ECO:0000256|RuleBase:RU004445};; 3-IPM-DH {ECO:0000256|HAMAP-Rule:MF_01033}; Beta-IPM dehydrogenase {ECO:0000256|HAMAP-Rule:MF_01033}; TaxID=316067 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter daltonii (strain DSM 22248 / JCM 15807 / FRC-32).;"
3-isopropylmalate dehydrogenase n=1 Tax=Geobacter daltonii (strain DSM 22248 / JCM 15807 / FRC-32) RepID=B9M6X3_GEODF rbh
S20_scaffold_529_curated_12
Geobacter pickeringii, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(11092..12270)
DNA (1179bp) protein (393aa)
Hopanoid biosynthesis associated glycosyl transferase protein HpnI n=1 Tax=Geobacter daltonii (strain DSM 22248 / JCM 15807 / FRC-32) RepID=B9M6X9_GEODF rbh
ceramide glucosyltransferase
Ceramide glucosyltransferase {ECO:0000313|EMBL:AJE02661.1}; TaxID=345632 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter pickeringii.;"
S20_scaffold_529_curated_13
Geobacter pickeringii, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12314..12871)
DNA (558bp) protein (186aa)
Efflux pump, RND superfamily, and rRNA methyltransferase, putative n=2 Tax=Geobacter metallireducens RepID=Q39RT7_GEOMG
rRNA methyltransferase
rRNA methyltransferase {ECO:0000313|EMBL:AJE02659.1}; TaxID=345632 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter pickeringii.;"
S20_scaffold_529_curated_14
Geobacter daltonii, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12876..15557)
DNA (2682bp) protein (894aa)
Hopanoid biosynthesis associated RND transporter like protein HpnN n=1 Tax=Geobacter daltonii (strain DSM 22248 / JCM 15807 / FRC-32) RepID=B9M6Y1_GEODF rbh
Efflux pump, RND superfamily, putative {ECO:0000313|EMBL:ACM22002.1}; TaxID=316067 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter daltonii (strain DSM 22248 / JCM 15807 / FRC-32).;"
hopanoid biosynthesis associated RND transporter like protein HpnN rbh
S20_scaffold_529_curated_15
Geobacter uraniireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15860..17893
DNA (2034bp) protein (678aa)
squalene-hopene cyclase (EC:5.4.99.17) rbh
Squalene-hopene cyclase {ECO:0000313|EMBL:ABQ25226.1}; EC=5.4.99.17 {ECO:0000313|EMBL:ABQ25226.1};; TaxID=351605 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter uraniireducens (strain Rf4) (Geobacter uraniumreducens).;"
Squalene-hopene cyclase n=1 Tax=Geobacter uraniireducens (strain Rf4) RepID=A5GB12_GEOUR rbh
S20_scaffold_529_curated_16
Geobacter uraniireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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17966..18964
DNA (999bp) protein (333aa)
NAD-dependent epimerase/dehydratase n=1 Tax=Geobacter uraniireducens (strain Rf4) RepID=A5GB31_GEOUR rbh
NAD-dependent epimerase/dehydratase rbh
NAD-dependent epimerase/dehydratase {ECO:0000313|EMBL:ABQ25225.1}; TaxID=351605 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter uraniireducens (strain Rf4) (Geobacter uraniumreducens).;"
S20_scaffold_529_curated_17
Geobacter daltonii, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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18980..20893
DNA (1914bp) protein (638aa)
1-deoxy-D-xylulose-5-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00315, ECO:0000256|SAAS:SAAS00085897}; EC=2.2.1.7 {ECO:0000256|HAMAP-Rule:MF_00315, ECO:0000256|SAAS:SAAS00085897};; 1-deoxyxylulose-5-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00315}; TaxID=316067 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter daltonii (strain DSM 22248 / JCM 15807 / FRC-32).;"
1-deoxy-D-xylulose-5-phosphate synthase n=1 Tax=Geobacter daltonii (strain DSM 22248 / JCM 15807 / FRC-32) RepID=B9M6Y4_GEODF rbh
1-deoxy-D-xylulose-5-phosphate synthase rbh
S20_scaffold_529_curated_18
Geobacter daltonii, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20988..21986
DNA (999bp) protein (333aa)
Hopanoid biosynthesis associated radical SAM protein HpnH n=1 Tax=Geobacter daltonii (strain DSM 22248 / JCM 15807 / FRC-32) RepID=B9M6Y5_GEODF rbh
hopanoid biosynthesis associated radical SAM protein HpnH rbh
Diploptene adenosyltransferase and reductase {ECO:0000313|EMBL:ACM22006.1}; TaxID=316067 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter daltonii (strain DSM 22248 / JCM 15807 / FRC-32).;"
S20_scaffold_529_curated_19
GWC2_Geobacteraceae_48_7_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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22234..24282
DNA (2049bp) protein (683aa)
Bacterial chemotaxis sensory transducer id=1941894 bin=GWB2_Geobacter-like_52_12 species=Curvibacter putative symbiont of Hydra magnipapillata genus=Curvibacter taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWB2_Geobacter-like_52_12 organism_group=Deltaproteobacteria organism_desc=Good rbh
methyl-accepting chemotaxis sensory transducer rbh
Tax=GWC2_Geobacteraceae_48_7_curated
S20_scaffold_529_curated_20
Geobacter metallireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24482..25156
DNA (675bp) protein (225aa)
Membrane protein, putative n=2 Tax=Geobacter metallireducens RepID=Q39SU3_GEOMG
membrane protein
Membrane protein, putative {ECO:0000313|EMBL:ABB32681.1}; TaxID=269799 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210).;"
S20_scaffold_529_curated_21
Geobacter uraniireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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25251..26144
DNA (894bp) protein (298aa)
Radical SAM domain protein n=1 Tax=Geobacter uraniireducens (strain Rf4) RepID=A5G7Y6_GEOUR rbh
radical SAM domain-containing protein rbh
Radical SAM domain protein {ECO:0000313|EMBL:ABQ27904.1}; TaxID=351605 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter uraniireducens (strain Rf4) (Geobacter uraniumreducens).;"
Displaying 25 items

View Taxonomy