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S21_scaffold_215_curated

Search features with annotation key words

Displaying items 1-30 of 35 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
S21_scaffold_215_curated_1
Pseudomonas stutzeri, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(1..1896)
DNA (1896bp) protein (632aa)
Electron transport complex protein RnfC n=1 Tax=Pseudomonas stutzeri (strain ATCC 17588 / DSM 5190 / CCUG 11256 / JCM 5965 / LMG 11199 / NCIMB 11358 / Stanier 221) RepID=F8H1A0_PSEUT rbh
rnfC; electron transport complex protein RnfC rbh
Electron transport complex subunit C {ECO:0000256|HAMAP-Rule:MF_00461}; TaxID=96563 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas stutzeri (strain ATCC 17588 / DSM 5190 / CCUG 11256 / JCM; 5965 / LMG 11199 / NCIMB 11358 / Stanier 221).;"
S21_scaffold_215_curated_2
Pseudomonas stutzeri, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1893..2468)
DNA (576bp) protein (192aa)
Electron transport complex protein RnfB n=4 Tax=Pseudomonas stutzeri RepID=RNFB_PSEU5 rbh
rnfB; electron transport complex protein RnfB rbh
Electron transport complex subunit B {ECO:0000256|HAMAP-Rule:MF_00463}; TaxID=96563 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas stutzeri (strain ATCC 17588 / DSM 5190 / CCUG 11256 / JCM; 5965 / LMG 11199 / NCIMB 11358 / Stanier 221).;"
S21_scaffold_215_curated_3
Pseudomonas stutzeri, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2465..3049)
DNA (585bp) protein (195aa)
Electron transport complex protein rnfA n=4 Tax=Pseudomonas stutzeri RepID=A4VIV6_PSEU5 rbh
rnfA-2; electron transport complex protein rnfA rbh
Electron transport complex subunit A {ECO:0000256|HAMAP-Rule:MF_00459}; TaxID=96563 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas stutzeri (strain ATCC 17588 / DSM 5190 / CCUG 11256 / JCM; 5965 / LMG 11199 / NCIMB 11358 / Stanier 221).;"
S21_scaffold_215_curated_4
Pseudomonas stutzeri, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3282..3704
DNA (423bp) protein (141aa)
Uncharacterized protein n=1 Tax=Pseudomonas stutzeri B1SMN1 RepID=S6JGQ8_PSEST rbh
Uncharacterized protein {ECO:0000313|EMBL:EPL59803.1}; TaxID=1212549 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas stutzeri B1SMN1.;"
hypothetical protein rbh
S21_scaffold_215_curated_5
R_Pseudomonadales_64_12, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3712..4818)
DNA (1107bp) protein (369aa)
crotonase n=1 Tax=Pseudomonas stutzeri RepID=UPI0003069E1B rbh
enoyl-CoA hydratase/isomerase rbh
Tax=RIFCSPHIGHO2_01_FULL_Pseudomonadales_64_12_curated
S21_scaffold_215_curated_6
Pseudomonas stutzeri, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4852..5670)
DNA (819bp) protein (273aa)
Enoyl-CoA hydratase n=1 Tax=Pseudomonas stutzeri (strain ATCC 17588 / DSM 5190 / CCUG 11256 / JCM 5965 / LMG 11199 / NCIMB 11358 / Stanier 221) RepID=F8H1A5_PSEUT rbh
enoyl-CoA hydratase rbh
Enoyl-CoA hydratase {ECO:0000313|EMBL:AEJ04403.1}; TaxID=96563 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas stutzeri (strain ATCC 17588 / DSM 5190 / CCUG 11256 / JCM; 5965 / LMG 11199 / NCIMB 11358 / Stanier 221).;"
S21_scaffold_215_curated_7
Pseudomonas stutzeri, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5827..7071)
DNA (1245bp) protein (415aa)
Possible branched-chain amino acid transport system substrate-binding protein n=2 Tax=Pseudomonas stutzeri RepID=A4VIV9_PSEU5 rbh
branched chain amino-acid ABC transporter substrate-binding protein rbh
Possible branched-chain amino acid transport system substrate-binding protein {ECO:0000313|EMBL:ABP78910.1}; TaxID=379731 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas stutzeri (strain A1501).;"
S21_scaffold_215_curated_8
Pseudomonas stutzeri, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7322..8017
DNA (696bp) protein (232aa)
Uracil-DNA glycosylase {ECO:0000256|HAMAP-Rule:MF_00148, ECO:0000256|RuleBase:RU003780}; Short=UDG {ECO:0000256|HAMAP-Rule:MF_00148};; EC=3.2.2.27 {ECO:0000256|HAMAP-Rule:MF_00148, ECO:0000256|RuleBase:RU003780};; TaxID=996285 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas stutzeri (strain DSM 4166 / CMT.9.A).;"
Uracil-DNA glycosylase n=4 Tax=Pseudomonas stutzeri RepID=F2MWY6_PSEU6 rbh
uracil-DNA glycosylase rbh
S21_scaffold_215_curated_9
R_Pseudomonadales_64_12, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8054..8569)
DNA (516bp) protein (172aa)
Predicted outer membrane protein n=4 Tax=Pseudomonas stutzeri RepID=A4VIW1_PSEU5 rbh
outer membrane protein rbh
Tax=RIFCSPHIGHO2_01_FULL_Pseudomonadales_64_12_curated
S21_scaffold_215_curated_10
R_Pseudomonadales_64_12, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8712..9548)
DNA (837bp) protein (279aa)
Predicted signal transduction protein n=2 Tax=Pseudomonas stutzeri RepID=A4VIW2_PSEU5 rbh
signal transduction protein rbh
Tax=RIFCSPHIGHO2_01_FULL_Pseudomonadales_64_12_curated
S21_scaffold_215_curated_11
Pseudomonas stutzeri, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9656..10603)
DNA (948bp) protein (316aa)
Aminomethyltransferase n=1 Tax=Pseudomonas stutzeri (strain ATCC 17588 / DSM 5190 / CCUG 11256 / JCM 5965 / LMG 11199 / NCIMB 11358 / Stanier 221) RepID=F8H1B0_PSEUT rbh
aminomethyltransferase rbh
tRNA-modifying protein YgfZ {ECO:0000256|SAAS:SAAS00211200}; TaxID=1212549 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas stutzeri B1SMN1.;"
S21_scaffold_215_curated_12
Pseudomonas stutzeri, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10750..11004
DNA (255bp) protein (85aa)
Uncharacterized protein n=4 Tax=Pseudomonas stutzeri RepID=A4VIW4_PSEU5
hypothetical protein
Pseudomonas stutzeri DSM 4166, complete genome {ECO:0000313|EMBL:AEA83093.1}; TaxID=996285 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas stutzeri (strain DSM 4166 / CMT.9.A).;"
S21_scaffold_215_curated_13
Pseudomonas stutzeri, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11412..13028)
DNA (1617bp) protein (539aa)
L-aspartate oxidase {ECO:0000256|RuleBase:RU362049}; EC=1.4.3.16 {ECO:0000256|RuleBase:RU362049};; TaxID=996285 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas stutzeri (strain DSM 4166 / CMT.9.A).;"
L-aspartate oxidase n=2 Tax=Pseudomonas stutzeri RepID=F2MWZ2_PSEU6 rbh
nadB; L-aspartate oxidase rbh
S21_scaffold_215_curated_14
Pseudomonas stutzeri, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13376..13957
DNA (582bp) protein (194aa)
RNA polymerase sigma factor n=10 Tax=Pseudomonas stutzeri subgroup RepID=A4VIW7_PSEU5 rbh
algU; RNA polymerase sigma factor AlgU rbh
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000716}; TaxID=1218352 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas stutzeri KOS6.;"
S21_scaffold_215_curated_15
Pseudomonas stutzeri, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13989..14576
DNA (588bp) protein (196aa)
Anti-sigma factor MucA n=3 Tax=Pseudomonas stutzeri RepID=A4VIW8_PSEU5 rbh
mucA; anti-sigma factor MucA rbh
Anti-sigma factor MucA {ECO:0000313|EMBL:EPL59791.1}; TaxID=1212549 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas stutzeri B1SMN1.;"
S21_scaffold_215_curated_16
Pseudomonas stutzeri, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14585..15529
DNA (945bp) protein (315aa)
Negative regulator for alginate biosynthesis MucB n=1 Tax=Pseudomonas stutzeri (strain DSM 4166 / CMT.9.A) RepID=F2MWZ5_PSEU6 rbh
mucB; negative regulator for alginate biosynthesis MucB rbh
MucB protein {ECO:0000313|EMBL:AEA83098.1}; TaxID=996285 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas stutzeri (strain DSM 4166 / CMT.9.A).;"
S21_scaffold_215_curated_17
Pseudomonas stutzeri, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15526..15978
DNA (453bp) protein (151aa)
Positive regulator for alginate biosynthesis MucC n=2 Tax=Pseudomonas stutzeri RepID=F2MWZ6_PSEU6
mucC; positive regulator for alginate biosynthesis MucC
Positive regulator for alginate biosynthesis MucC {ECO:0000313|EMBL:AEJ04415.1}; TaxID=96563 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas stutzeri (strain ATCC 17588 / DSM 5190 / CCUG 11256 / JCM; 5965 / LMG 11199 / NCIMB 11358 / Stanier 221).;"
S21_scaffold_215_curated_18
R_Pseudomonadales_64_12, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16014..17435
DNA (1422bp) protein (474aa)
Serine protease MucD n=3 Tax=Pseudomonas stutzeri RepID=A4VIX1_PSEU5 rbh
mucD; serine protease MucD rbh
Tax=RIFCSPHIGHO2_01_FULL_Pseudomonadales_64_12_curated
S21_scaffold_215_curated_19
Pseudomonas stutzeri, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17615..19414
DNA (1800bp) protein (600aa)
Elongation factor 4 {ECO:0000256|HAMAP-Rule:MF_00071}; Short=EF-4 {ECO:0000256|HAMAP-Rule:MF_00071};; EC=3.6.5.n1 {ECO:0000256|HAMAP-Rule:MF_00071};; Ribosomal back-translocase LepA {ECO:0000256|HAMAP-Rule:MF_00071}; TaxID=996285 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas stutzeri (strain DSM 4166 / CMT.9.A).;"
Elongation factor 4 n=2 Tax=Pseudomonas stutzeri RepID=F2MWZ8_PSEU6 rbh
lepA; GTP-binding protein LepA rbh
S21_scaffold_215_curated_20
Pseudomonas stutzeri, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19416..20270
DNA (855bp) protein (285aa)
Signal peptidase I {ECO:0000256|RuleBase:RU003993}; EC=3.4.21.89 {ECO:0000256|RuleBase:RU003993};; TaxID=96563 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas stutzeri (strain ATCC 17588 / DSM 5190 / CCUG 11256 / JCM; 5965 / LMG 11199 / NCIMB 11358 / Stanier 221).;"
Signal peptidase I n=1 Tax=Pseudomonas stutzeri (strain ATCC 17588 / DSM 5190 / CCUG 11256 / JCM 5965 / LMG 11199 / NCIMB 11358 / Stanier 221) RepID=F8H1C0_PSEUT rbh
lepB; signal peptidase I rbh
S21_scaffold_215_curated_21
Pseudomonas stutzeri, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20363..20740
DNA (378bp) protein (126aa)
Uncharacterized protein n=4 Tax=Pseudomonas stutzeri RepID=A4VIX4_PSEU5
hypothetical protein
Pseudomonas stutzeri DSM 4166, complete genome {ECO:0000313|EMBL:AEA83103.1}; TaxID=996285 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas stutzeri (strain DSM 4166 / CMT.9.A).;"
S21_scaffold_215_curated_22
Pseudomonas stutzeri, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20737..21426
DNA (690bp) protein (230aa)
Ribonuclease 3 {ECO:0000256|HAMAP-Rule:MF_00104, ECO:0000256|SAAS:SAAS00231299}; EC=3.1.26.3 {ECO:0000256|HAMAP-Rule:MF_00104, ECO:0000256|SAAS:SAAS00231445};; Ribonuclease III {ECO:0000256|HAMAP-Rule:MF_00104}; TaxID=96563 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas stutzeri (strain ATCC 17588 / DSM 5190 / CCUG 11256 / JCM; 5965 / LMG 11199 / NCIMB 11358 / Stanier 221).;"
Ribonuclease 3 n=4 Tax=Pseudomonas stutzeri RepID=F2MX01_PSEU6 rbh
rnc; ribonuclease III rbh
S21_scaffold_215_curated_23
Pseudomonas stutzeri, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21419..22330
DNA (912bp) protein (304aa)
GTPase Era n=4 Tax=Pseudomonas stutzeri RepID=A4VIX6_PSEU5 rbh
yqfH; GTP-binding protein Era rbh
GTPase Era {ECO:0000256|HAMAP-Rule:MF_00367, ECO:0000256|SAAS:SAAS00085723}; TaxID=96563 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas stutzeri (strain ATCC 17588 / DSM 5190 / CCUG 11256 / JCM; 5965 / LMG 11199 / NCIMB 11358 / Stanier 221).;"
S21_scaffold_215_curated_24
Pseudomonas stutzeri, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22379..23068
DNA (690bp) protein (230aa)
DNA repair protein RecO n=4 Tax=Pseudomonas stutzeri RepID=RECO_PSEU5 rbh
recO; DNA repair protein RecO rbh
DNA repair protein RecO {ECO:0000256|HAMAP-Rule:MF_00201, ECO:0000256|SAAS:SAAS00018750}; Recombination protein O {ECO:0000256|HAMAP-Rule:MF_00201}; TaxID=996285 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas stutzeri (strain DSM 4166 / CMT.9.A).;"
S21_scaffold_215_curated_25
Pseudomonas stutzeri, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23061..23807
DNA (747bp) protein (249aa)
Pyridoxine 5'-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00279, ECO:0000256|SAAS:SAAS00088558}; Short=PNP synthase {ECO:0000256|HAMAP-Rule:MF_00279};; EC=2.6.99.2 {ECO:0000256|HAMAP-Rule:MF_00279, ECO:0000256|SAAS:SAAS00088588};; TaxID=1212549 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas stutzeri B1SMN1.;"
Pyridoxine 5'-phosphate synthase n=3 Tax=Pseudomonas stutzeri RepID=PDXJ_PSEU5 rbh
pdxJ; pyridoxine 5'-phosphate synthase rbh
S21_scaffold_215_curated_26
Pseudomonas stutzeri, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23863..24069)
DNA (207bp) protein (69aa)
Uncharacterized protein n=4 Tax=Pseudomonas stutzeri RepID=A4VIX9_PSEU5
hypothetical protein
Pseudomonas stutzeri DSM 4166, complete genome {ECO:0000313|EMBL:AEA83108.1}; TaxID=996285 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas stutzeri (strain DSM 4166 / CMT.9.A).;"
S21_scaffold_215_curated_27
Pseudomonas stutzeri, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24054..25004)
DNA (951bp) protein (317aa)
Transcriptional regulator n=4 Tax=Pseudomonas stutzeri RepID=F2MX06_PSEU6 rbh
transcriptional regulator rbh
Transcriptional regulator {ECO:0000313|EMBL:EPL59779.1}; TaxID=1212549 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas stutzeri B1SMN1.;"
S21_scaffold_215_curated_28
R_Pseudomonadales_64_12, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25143..25415
DNA (273bp) protein (91aa)
Uncharacterized protein n=3 Tax=Pseudomonas stutzeri RepID=F8H1T5_PSEUT
hypothetical protein
Tax=RIFCSPHIGHO2_01_FULL_Pseudomonadales_64_12_curated
S21_scaffold_215_curated_29
R_Pseudomonadales_64_12, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25435..26397)
DNA (963bp) protein (321aa)
tRNA methyltransferase n=1 Tax=Pseudomonas stutzeri RepID=UPI00030E973E rbh
methyltransferase rbh
Tax=RIFCSPHIGHO2_01_FULL_Pseudomonadales_64_12_curated
S21_scaffold_215_curated_30
Pseudomonas stutzeri, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26394..27137)
DNA (744bp) protein (248aa)
tRNA (cmo5U34)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01589}; EC=2.1.1.- {ECO:0000256|HAMAP-Rule:MF_01589};; TaxID=1212549 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas stutzeri B1SMN1.;"
tRNA (cmo5U34)-methyltransferase n=2 Tax=Pseudomonas stutzeri RepID=CMOA_PSEU5 rbh
methyltransferase rbh
Displaying items 1-30 of 35 in total

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