ggKbase home page

S22_scaffold_378_curated

Search features with annotation key words

Displaying 18 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
S22_scaffold_378_curated_1
Rhizobium sp. UR51a, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(224..823)
DNA (600bp) protein (200aa)
Uncharacterized protein n=1 Tax=Rhizobium sp. IRBG74 RepID=U4Q851_9RHIZ rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:KIV60709.1}; TaxID=1604021 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. UR51a.;"
S22_scaffold_378_curated_2
Rhizobium sp. IRBG74, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(840..1157)
DNA (318bp) protein (106aa)
Uncharacterized protein n=1 Tax=Rhizobium sp. IRBG74 RepID=U4Q4S4_9RHIZ
conserved exported protein of unknown function
Uncharacterized protein {ECO:0000313|EMBL:CDI12238.1}; TaxID=424182 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. IRBG74.;"
S22_scaffold_378_curated_3
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1758..2018)
DNA (261bp) protein (87aa)
hypothetical protein n=1 Tax=Rhizobium radiobacter RepID=UPI0003637EB0
Uncharacterized protein {ECO:0000313|EMBL:EPR21234.1}; TaxID=1336745 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium radiobacter DSM 30147.;"
Virulence-associated protein-related protein
S22_scaffold_378_curated_4
Rhizobium sp. H41, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2158..2700)
DNA (543bp) protein (181aa)
Putative transcriptional regulator, NnrR-like, Crp/Fnr family n=1 Tax=Rhizobium sp. IRBG74 RepID=U4Q858_9RHIZ
putative transcriptional regulator, NnrR-like, Crp/Fnr family
Crp/Fnr family transcriptional regulator {ECO:0000313|EMBL:KGE80775.1}; TaxID=1510041 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. H41.;"
S22_scaffold_378_curated_5
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2854..3663
DNA (810bp) protein (270aa)
ABC transporter, membrane spanning protein (Anion) n=1 Tax=Agrobacterium tumefaciens CCNWGS0286 RepID=G6XT31_RHIRD rbh
ABC transporter, membrane spanning protein (Anion) {ECO:0000313|EMBL:EHH07098.1}; TaxID=1082932 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium tumefaciens CCNWGS0286.;"
anion ABC transporter permease
S22_scaffold_378_curated_6
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3660..4412
DNA (753bp) protein (251aa)
ABC transporter ATPase n=1 Tax=Rhizobium radiobacter RepID=UPI0003615B26 rbh
ABC transporter ATPase {ECO:0000313|EMBL:EPR22484.1}; TaxID=1336745 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium radiobacter DSM 30147.;"
ABC transporter ATP-binding protein (tauB-like) rbh
S22_scaffold_378_curated_7
Rhizobium sp. H41, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4409..4558
DNA (150bp) protein (50aa)
Uncharacterized protein n=1 Tax=Agrobacterium tumefaciens str. Cherry 2E-2-2 RepID=M8BGB6_RHIRD
Uncharacterized protein {ECO:0000313|EMBL:KGE80752.1}; TaxID=1510041 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. H41.;"
conserved membrane protein of unknown function
S22_scaffold_378_curated_8
Rhizobium sp. H41, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4555..4845
DNA (291bp) protein (97aa)
Periplasmic nitrate reductase, four-heme c-type cytochrome (NapC/NirT) n=1 Tax=Rhizobium sp. IRBG74 RepID=U4Q4R8_9RHIZ
Cytochrome c-type protein {ECO:0000256|PIRNR:PIRNR000013}; TaxID=1510041 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. H41.;"
napC; Periplasmic nitrate reductase, four-heme c-type cytochrome (NapC/NirT)
S22_scaffold_378_curated_9
Rhizobium sp. H41, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5067..5843)
DNA (777bp) protein (259aa)
exodeoxyribonuclease III (Exonuclease III) (EXO III) (AP endonuclease VI) (EC:3.1.11.2) rbh
Exodeoxyribonuclease III n=1 Tax=Rhizobium lupini HPC(L) RepID=K5D000_RHILU rbh
Exodeoxyribonuclease III {ECO:0000313|EMBL:KGE80745.1}; TaxID=1510041 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. H41.;"
S22_scaffold_378_curated_10
Rhizobium sp. LPU83, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5850..6026)
DNA (177bp) protein (59aa)
Uncharacterized protein n=1 Tax=Rhizobium lupini HPC(L) RepID=K5CZ10_RHILU
Uncharacterized protein {ECO:0000313|EMBL:CDM60289.1}; TaxID=348824 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. LPU83.;"
hypothetical protein
S22_scaffold_378_curated_11
Rhizobium sp. IRBG74, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6227..7126
DNA (900bp) protein (300aa)
Probable DNA repair protein BN877_p0683 n=1 Tax=Rhizobium sp. IRBG74 RepID=U4Q8U1_9RHIZ rbh
conserved hypothetical protein; putative Ku protein rbh
Non-homologous end joining protein Ku {ECO:0000256|HAMAP-Rule:MF_01875}; TaxID=424182 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. IRBG74.;"
S22_scaffold_378_curated_12
Rhizobium sp. H41, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7139..7951
DNA (813bp) protein (271aa)
Probable DNA repair protein C241_17023 n=1 Tax=Rhizobium lupini HPC(L) RepID=K5C0J3_RHILU rbh
Non-homologous end joining protein Ku {ECO:0000256|HAMAP-Rule:MF_01875}; TaxID=1510041 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. H41.;"
conserved hypothetical protein; putative Ku family protein rbh
S22_scaffold_378_curated_13
Rhizobium sp. IRBG74, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7948..8118
DNA (171bp) protein (57aa)
ATP-dependent DNA ligase n=2 Tax=Rhizobium RepID=U4QFY4_9RHIZ
ATP-dependent DNA ligase
ATP-dependent DNA ligase {ECO:0000313|EMBL:CDI12395.1}; TaxID=424182 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. IRBG74.;"
S22_scaffold_378_curated_14
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8073..8966
DNA (894bp) protein (298aa)
ATP-dependent DNA ligase n=2 Tax=Rhizobium RepID=U4QFY4_9RHIZ rbh
ATP-dependent DNA ligase {ECO:0000313|EMBL:KAJ35612.1}; TaxID=358 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Rhizobium radiobacter (Agrobacterium tumefaciens) (Agrobacterium; radiobacter).;"
ATP-dependent DNA ligase rbh
S22_scaffold_378_curated_15
Rhizobium lupini, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9136..9612
DNA (477bp) protein (159aa)
Small heat shock protein n=1 Tax=Rhizobium lupini HPC(L) RepID=K5CNK7_RHILU rbh
Small heat shock protein {ECO:0000313|EMBL:EKJ94974.1}; TaxID=1229491 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium lupini HPC(L).;"
small heat shock protein, HSP20-like chaperone (modular protein) rbh
S22_scaffold_378_curated_16
Rhizobium sp. UR51a, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9682..9981
DNA (300bp) protein (100aa)
Uncharacterized protein n=1 Tax=Rhizobium lupini HPC(L) RepID=K5D005_RHILU
Carbamoylphosphate synthase large subunit {ECO:0000313|EMBL:KIV60897.1}; TaxID=1604021 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. UR51a.;"
hypothetical protein
S22_scaffold_378_curated_17
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9996..10187
DNA (192bp) protein (64aa)
Uncharacterized protein n=1 Tax=Rhizobium lupini HPC(L) RepID=K5CZ16_RHILU
Uncharacterized protein {ECO:0000313|EMBL:KAJ35615.1}; TaxID=358 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Rhizobium radiobacter (Agrobacterium tumefaciens) (Agrobacterium; radiobacter).;"
hypothetical protein
S22_scaffold_378_curated_18
Rhizobium sp. IRBG74, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10246..12423)
DNA (2178bp) protein (726aa)
Putative ATP-dependent DNA ligase {ECO:0000313|EMBL:CDI12391.1}; EC=6.5.1.1 {ECO:0000313|EMBL:CDI12391.1};; TaxID=424182 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. IRBG74.;"
putative ATP-dependent DNA ligase (EC:6.5.1.1) rbh
Putative ATP-dependent DNA ligase n=1 Tax=Rhizobium sp. IRBG74 RepID=U4QIX7_9RHIZ rbh
Displaying 18 items

View Taxonomy