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S22_scaffold_106_curated

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Displaying items 1-30 of 115 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
S22_scaffold_106_curated_1
Xanthobacter autotrophicus, Xanthobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2..244
DNA (243bp) protein (81aa)
3-hydroxyacyl-CoA dehydrogenase NAD-binding n=1 Tax=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) RepID=A7IDR4_XANP2
NAD-binding 3-hydroxyacyl-CoA dehydrogenase
3-hydroxyacyl-CoA dehydrogenase NAD-binding {ECO:0000313|EMBL:ABS66157.1}; TaxID=78245 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Xanthobacter.;" source="Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2).;"
S22_scaffold_106_curated_2
Bordetella bronchiseptica, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(324..1517)
DNA (1194bp) protein (398aa)
Putative thiolase n=1 Tax=Bordetella bronchiseptica 253 RepID=K4QIL8_BORBO rbh
thiolase rbh
Acetyl-CoA acetyltransferase {ECO:0000313|EMBL:KCV61102.1}; TaxID=1331202 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella bronchiseptica 99-R-0433.;"
S22_scaffold_106_curated_3
Bordetella bronchiseptica, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1533..3002)
DNA (1470bp) protein (490aa)
Uncharacterized protein n=2 Tax=Bordetella bronchiseptica RepID=K0MQX9_BORBM rbh
hypothetical protein rbh
PF01796 domain protein {ECO:0000313|EMBL:KDD60781.1}; TaxID=1331242 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella bronchiseptica OSU553.;"
S22_scaffold_106_curated_4
Bordetella bronchiseptica, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3158..4405
DNA (1248bp) protein (416aa)
Putative oxidoreductase n=1 Tax=Bordetella bronchiseptica 1289 RepID=K4U286_BORBO rbh
Pyridine nucleotide-disulfide oxidoreductase {ECO:0000313|EMBL:KCV61122.1}; TaxID=1331202 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella bronchiseptica 99-R-0433.;"
oxidoreductase rbh
S22_scaffold_106_curated_5
unknown

Not on your lists

comp(4300..4641)
DNA (342bp) protein (114aa)

This feature has no annotations

S22_scaffold_106_curated_6
Bordetella pertussis, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4619..5290)
DNA (672bp) protein (224aa)
TetR family transcriptional regulator n=38 Tax=Bordetella RepID=F4LA29_BORPC
TetR-family transcriptional regulator
Transcriptional regulator, TetR family {ECO:0000313|EMBL:ETH90140.1}; TaxID=1331279 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella pertussis STO1-CHOC-0019.;"
S22_scaffold_106_curated_7
Bordetella bronchiseptica, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5601..6926
DNA (1326bp) protein (442aa)
Putative acyl-CoA ligase n=1 Tax=Bordetella bronchiseptica 253 RepID=K4QHM4_BORBO rbh
acyl-CoA ligase rbh
AMP-binding enzyme C-terminal domain protein {ECO:0000313|EMBL:KCV61137.1}; TaxID=1331202 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella bronchiseptica 99-R-0433.;"
S22_scaffold_106_curated_8
Bordetella bronchiseptica, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6934..7836
DNA (903bp) protein (301aa)
Putative esterase n=1 Tax=Bordetella bronchiseptica 253 RepID=K4QE20_BORBO rbh
esterase rbh
Hydrolase, alpha/beta domain protein {ECO:0000313|EMBL:KCV61121.1}; TaxID=1331202 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella bronchiseptica 99-R-0433.;"
S22_scaffold_106_curated_9
Bordetella bronchiseptica, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7928..9046)
DNA (1119bp) protein (373aa)
Putative fatty-acyl-CoA racemase n=2 Tax=Bordetella bronchiseptica RepID=K0MSK7_BORBM rbh
fatty-acyl-CoA racemase rbh
CoA-transferase family III protein {ECO:0000313|EMBL:KDD60794.1}; TaxID=1331242 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella bronchiseptica OSU553.;"
S22_scaffold_106_curated_10
Bordetella bronchiseptica, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9052..9372)
DNA (321bp) protein (107aa)
Putative ferredoxin n=1 Tax=Bordetella bronchiseptica 253 RepID=K4QH37_BORBO
ferredoxin
2Fe-2S ferredoxin {ECO:0000313|EMBL:KCV61066.1}; TaxID=1331202 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella bronchiseptica 99-R-0433.;"
S22_scaffold_106_curated_11
Bordetella pertussis, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9409..10158)
DNA (750bp) protein (250aa)
Putative 3-oxoacyl-CoA or-ACP reductase n=1 Tax=Bordetella bronchiseptica 1289 RepID=K4U295_BORBO rbh
3-oxoacyl-ACP reductase
Putative acetoacetyl-CoA reductase {ECO:0000313|EMBL:ETH90130.1}; TaxID=1331279 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella pertussis STO1-CHOC-0019.;"
S22_scaffold_106_curated_12
Bordetella bronchiseptica, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10155..10985)
DNA (831bp) protein (277aa)
Enoyl-CoA hydratase/isomerase-like protein n=2 Tax=Bordetella bronchiseptica RepID=Q7WHR0_BORBR rbh
enoyl-CoA hydratase-like protein rbh
Enoyl-CoA hydratase/isomerase-like protein {ECO:0000313|EMBL:CCN22806.1}; TaxID=1208657 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella bronchiseptica 1289.;"
S22_scaffold_106_curated_13
Bordetella pertussis, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11035..11568)
DNA (534bp) protein (178aa)
SnoaL-like domain protein n=34 Tax=Bordetella RepID=V8U8K0_BORPT
dioxygenase component
Dioxygenase component {ECO:0000313|EMBL:AIW95655.1}; TaxID=743278 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella pertussis B1920.;"
S22_scaffold_106_curated_14
Bordetella bronchiseptica, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11568..12845)
DNA (1278bp) protein (426aa)
Putative dioxygenase hydroxylase component n=1 Tax=Bordetella bronchiseptica 253 RepID=K4QHJ6_BORBO rbh
dioxygenase hydroxylase component rbh
Rieske [2Fe-2S] domain protein {ECO:0000313|EMBL:KCV61086.1}; TaxID=1331202 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella bronchiseptica 99-R-0433.;"
S22_scaffold_106_curated_15
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13217..14356
DNA (1140bp) protein (380aa)
Extracellular ligand-binding receptor n=1 Tax=Agrobacterium tumefaciens F2 RepID=F7UDG3_RHIRD rbh
Extracellular ligand-binding receptor {ECO:0000313|EMBL:EGP55491.1}; TaxID=1050720 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium tumefaciens F2.;"
extracellular ligand-binding receptor rbh
S22_scaffold_106_curated_16
Labrenzia alexandrii, Labrenzia, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14523..15395
DNA (873bp) protein (291aa)
Putative amino acid or sugar ABC transport system, permease protein n=1 Tax=Labrenzia alexandrii DFL-11 RepID=B9R4H6_9RHOB rbh
Putative amino acid or sugar ABC transport system, permease protein {ECO:0000313|EMBL:EEE46803.1}; TaxID=244592 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Labrenzia.;" source="Labrenzia alexandrii (strain DSM 17067 / NCIMB 14079 / DFL-11); (Stappia alexandrii).;"
High-affinity branched-chain amino acid transport system permease protein LivH
S22_scaffold_106_curated_17
Paracoccus versutus, Paracoccus, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15398..16354
DNA (957bp) protein (319aa)
Amino acid/amide ABC transporter membrane protein 2, HAAT family n=1 Tax=Paracoccus denitrificans (strain Pd 1222) RepID=A1BBG2_PARDP rbh
Branched-chain amino acid ABC transporter permease {ECO:0000313|EMBL:KGJ10297.1}; TaxID=34007 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Paracoccus.;" source="Paracoccus versutus (Thiobacillus versutus).;"
inner-membrane translocator rbh
S22_scaffold_106_curated_18
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16351..17136
DNA (786bp) protein (262aa)
High-affinity branched-chain amino acid transport ATP-binding protein BraF n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D6J1_9RHIZ rbh
High-affinity branched-chain amino acid transport ATP-binding protein BraF {ECO:0000313|EMBL:EYR78763.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
braF2; high-affinity branched-chain amino acid transport ATP-binding protein BraF rbh
S22_scaffold_106_curated_19
Sinorhizobium fredii, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17123..17824
DNA (702bp) protein (234aa)
High-affinity branched-chain amino acid transport ATP-binding protein LivF n=1 Tax=Sinorhizobium fredii USDA 257 RepID=I3XCC0_RHIFR rbh
livF7; high-affinity branched-chain amino acid transport ATP-binding protein LivF rbh
High-affinity branched-chain amino acid transport ATP-binding protein LivF {ECO:0000313|EMBL:AFL53526.1}; TaxID=1185652 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium fredii USDA 257.;"
S22_scaffold_106_curated_20
Bradyrhizobium sp. DFCI-1, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17895..18728
DNA (834bp) protein (278aa)
Alpha-acetolactate decarboxylase n=1 Tax=Bradyrhizobium sp. DFCI-1 RepID=U1HBM6_9BRAD rbh
Alpha-acetolactate decarboxylase {ECO:0000313|EMBL:ERF81891.1}; TaxID=1230476 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. DFCI-1.;"
alpha-acetolactate decarboxylase
S22_scaffold_106_curated_21
Xanthobacter autotrophicus, Xanthobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18744..19289)
DNA (546bp) protein (182aa)
Uncharacterized protein n=1 Tax=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) RepID=A7ILS8_XANP2
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABS68971.1}; TaxID=78245 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Xanthobacter.;" source="Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2).;"
S22_scaffold_106_curated_22
Ochrobactrum anthropi, Ochrobactrum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19520..19996
DNA (477bp) protein (159aa)
transcriptional regulator n=1 Tax=Ochrobactrum anthropi RepID=UPI000287B50F
Transcriptional regulator {ECO:0000313|EMBL:EXL01974.1}; TaxID=529 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Ochrobactrum.;" source="Ochrobactrum anthropi.;"
marR family protein
S22_scaffold_106_curated_23
Citreicella sp. SE45, Citreicella, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19996..21150
DNA (1155bp) protein (385aa)
Putative membrane protein n=1 Tax=Citreicella sp. SE45 RepID=D0D1T4_9RHOB rbh
Putative membrane protein {ECO:0000313|EMBL:EEX14660.1}; TaxID=501479 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Citreicella.;" source="Citreicella sp. SE45.;"
hypothetical protein rbh
S22_scaffold_106_curated_24
unknown

Not on your lists

21252..21431
DNA (180bp) protein (60aa)

This feature has no annotations

S22_scaffold_106_curated_25
Sinorhizobium meliloti, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21442..22533)
DNA (1092bp) protein (364aa)
Putative phosphate acetyltransferase protein n=1 Tax=Sinorhizobium meliloti (strain SM11) RepID=F7XFY4_SINMM rbh
pta; putative phosphate acetyltransferase protein rbh
Putative phosphate acetyltransferase protein {ECO:0000313|EMBL:AEH83460.1}; TaxID=707241 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium meliloti (strain SM11).;"
S22_scaffold_106_curated_26
Aureimonas altamirensis, Aureimonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22605..24380)
DNA (1776bp) protein (592aa)
Sulfoacetaldehyde acetyltransferase n=1 Tax=Nitratireductor indicus C115 RepID=K2PTX6_9RHIZ rbh
Sulfoacetaldehyde acetyltransferase {ECO:0000313|EMBL:KHJ56244.1}; TaxID=370622 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Aurantimonadaceae; Aureimonas.;" source="Aureimonas altamirensis.;"
xsc; putative sulfoacetaldehyde acetyltransferase rbh
S22_scaffold_106_curated_27
Aureimonas altamirensis, Aureimonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24493..25833)
DNA (1341bp) protein (447aa)
Probabable MFS permease n=1 Tax=Sinorhizobium meliloti Rm41 RepID=K0PRY8_RHIML rbh
Major facilitator transporter {ECO:0000313|EMBL:KHJ56245.1}; TaxID=370622 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Aurantimonadaceae; Aureimonas.;" source="Aureimonas altamirensis.;"
probabable MFS permease rbh
S22_scaffold_106_curated_28
Sinorhizobium medicae, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25797..27503)
DNA (1707bp) protein (569aa)
Glucose-methanol-choline oxidoreductase n=1 Tax=Sinorhizobium medicae (strain WSM419) RepID=A6UJ19_SINMW rbh
glucose-methanol-choline oxidoreductase rbh
Glucose-methanol-choline oxidoreductase {ECO:0000313|EMBL:ABR63649.1}; TaxID=366394 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium medicae (strain WSM419) (Ensifer medicae).;"
S22_scaffold_106_curated_29
Aureimonas altamirensis, Aureimonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27598..28530
DNA (933bp) protein (311aa)
IclR family transcriptional regulator n=1 Tax=Sinorhizobium medicae RepID=UPI000373E070
Uncharacterized protein {ECO:0000313|EMBL:KHJ56246.1}; TaxID=370622 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Aurantimonadaceae; Aureimonas.;" source="Aureimonas altamirensis.;"
regulatory protein, IclR
S22_scaffold_106_curated_30
Methylobacterium populi, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28541..29170)
DNA (630bp) protein (210aa)
Nitrile hydratase alpha chain n=1 Tax=Methylobacterium populi (strain ATCC BAA-705 / NCIMB 13946 / BJ001) RepID=B1Z8J3_METPB
nitrile hydratase subunit alpha
Nitrile hydratase alpha chain {ECO:0000313|EMBL:ACB81922.1}; TaxID=441620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium populi (strain ATCC BAA-705 / NCIMB 13946 / BJ001).;"
Displaying items 1-30 of 115 in total

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