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S23_scaffold_264_curated

Search features with annotation key words

Displaying items 1-30 of 40 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
S23_scaffold_264_curated_1
unknown

Not on your lists

comp(3..110)
DNA (108bp) protein (36aa)

This feature has no annotations

S23_scaffold_264_curated_2
RifOxyA12_full_Desulfobacterales_46_15_curated, Desulfobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(241..1488)
DNA (1248bp) protein (416aa)
saccharopine dehydrogenase id=1247602 bin=RBG9 species=RBG9 genus=RBG9 taxon_order=RBG9 taxon_class=RBG9 phylum=Chloroflexi tax=RBG9 organism_group=Chloroflexi
saccharopine dehydrogenase
Tax=RifOxyA12_full_Desulfobacterales_46_15_curated
S23_scaffold_264_curated_3
Firmicutes bacterium CAG:238, Firmicutes, Bacteria

Not on your lists

comp(1678..3084)
DNA (1407bp) protein (469aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:238 RepID=R6DUE6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDA92103.1}; TaxID=1263011 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:238.;"
hypothetical protein
S23_scaffold_264_curated_4
BJP_IG2103_Clostridiales_50_15, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3203..4360)
DNA (1158bp) protein (386aa)
hypothetical protein n=1 Tax=Paenibacillus terrigena RepID=UPI00036252BC
alcohol dehydrogenase
Tax=BJP_IG2103_Clostridiales_50_15
S23_scaffold_264_curated_5
Pelotomaculum thermopropionicum, Pelotomaculum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4574..6265)
DNA (1692bp) protein (564aa)
Transcriptional regulator n=1 Tax=Pelotomaculum thermopropionicum (strain DSM 13744 / JCM 10971 / SI) RepID=A5D2Z2_PELTS rbh
RocR; transcriptional regulator rbh
Transcriptional regulator {ECO:0000313|EMBL:BAF59373.1}; TaxID=370438 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae; Pelotomaculum.;" source="Pelotomaculum thermopropionicum (strain DSM 13744 / JCM 10971 / SI).;"
S23_scaffold_264_curated_6
BJP_IG2103_Clostridiales_50_15, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6499..8136)
DNA (1638bp) protein (546aa)
amidohydrolase (EC:3.5.-.-)
Uncharacterized protein n=1 Tax=Bacillus sp. SG-1 RepID=A6CLM9_9BACI
Tax=BJP_IG2103_Clostridiales_50_15
S23_scaffold_264_curated_7
Bacillus cellulosilyticus, Bacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(8151..9035)
DNA (885bp) protein (295aa)
N-carbamoylputrescine amidase n=1 Tax=Bacillus cellulosilyticus (strain ATCC 21833 / DSM 2522 / FERM P-1141 / JCM 9156 / N-4) RepID=E6TZ20_BACCJ rbh
N-carbamoylputrescine amidase rbh
N-carbamoylputrescine amidase {ECO:0000313|EMBL:ADU32463.1}; TaxID=649639 species="Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Bacillus.;" source="Bacillus cellulosilyticus (strain ATCC 21833 / DSM 2522 / FERM P-1141; / JCM 9156 / N-4).;"
S23_scaffold_264_curated_8
Clostridium sporogenes, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9374..9685
DNA (312bp) protein (104aa)
Uncharacterized protein n=1 Tax=Clostridium sporogenes ATCC 15579 RepID=J7TB67_CLOSG
Uncharacterized protein {ECO:0000313|EMBL:EDU37237.1}; TaxID=471871 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sporogenes ATCC 15579.;"
hypothetical protein
S23_scaffold_264_curated_9
Sporomusa ovata, Sporomusa, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

comp(9882..10190)
DNA (309bp) protein (103aa)
Amino acid permease n=1 Tax=Sporomusa ovata DSM 2662 RepID=T0IKX4_9FIRM
Amino acid permease {ECO:0000313|EMBL:EQB25197.1}; TaxID=1123288 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Sporomusa.;" source="Sporomusa ovata DSM 2662.;"
ycjJ; amino acid permease
S23_scaffold_264_curated_10
Desulfitobacterium hafniense, Desulfitobacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10318..11544)
DNA (1227bp) protein (409aa)
Uncharacterized protein n=3 Tax=Desulfitobacterium hafniense RepID=B8FTL3_DESHD rbh
hypothetical protein rbh
Putative uncharacterized protein {ECO:0000313|EMBL:BAE84727.1}; TaxID=138119 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae; Desulfitobacterium.;" source="Desulfitobacterium hafniense (strain Y51).;"
S23_scaffold_264_curated_11
BJP_IG2103_Clostridiales_50_15, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11814..12851)
DNA (1038bp) protein (346aa)
Uncharacterized protein n=1 Tax=Clostridium sp. ATCC BAA-442 RepID=U2DGV8_9CLOT rbh
alcohol dehydrogenase, zinc-binding
Tax=BJP_IG2103_Clostridiales_50_15
S23_scaffold_264_curated_12
Fusobacterium periodonticum, Fusobacterium, Fusobacteriales, Fusobacteriia, Fusobacteria, Bacteria

Not on your lists

comp(12911..14215)
DNA (1305bp) protein (435aa)
TRAP dicarboxylate transporter, DctM subunit n=1 Tax=Fusobacterium periodonticum 1_1_41FAA RepID=D6LGK0_9FUSO rbh
TRAP dicarboxylate transporter, DctM subunit {ECO:0000313|EMBL:EFG29285.2}; TaxID=469621 species="Bacteria; Fusobacteria; Fusobacteriales; Fusobacteriaceae; Fusobacterium.;" source="Fusobacterium periodonticum 1_1_41FAA.;"
hypothetical protein
S23_scaffold_264_curated_13
Flavonifractor plautii, Flavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14215..14730)
DNA (516bp) protein (172aa)
TRAP transporter, DctQ-like membrane protein n=1 Tax=Flavonifractor plautii ATCC 29863 RepID=G9YRN6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:KGF56421.1}; TaxID=742738 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Flavonifractor.;" source="Clostridium orbiscindens 1_3_50AFAA.;"
TRAP-type C4-dicarboxylate transport system, small permease component
S23_scaffold_264_curated_14
BJP_IG2103_Clostridiales_50_15, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14886..15911)
DNA (1026bp) protein (342aa)
TRAP dicarboxylate transporter DctP subunit n=1 Tax=Fusobacterium periodonticum 1_1_41FAA RepID=D6LGJ8_9FUSO rbh
tripartite ATP-independent periplasmic transporter solute receptor, DctP family
Tax=BJP_IG2103_Clostridiales_50_15
S23_scaffold_264_curated_15
Cohnella sp. VKM B-2846, Cohnella, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(15970..16785)
DNA (816bp) protein (272aa)
Uncharacterized protein n=1 Tax=Lachnospiraceae bacterium oral taxon 082 str. F0431 RepID=H1LUW6_9FIRM
3-keto-5-aminohexanoate cleavage protein {ECO:0000313|EMBL:KIL37027.1}; TaxID=1590652 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Cohnella.;" source="Cohnella sp. VKM B-2846.;"
hypothetical protein rbh
S23_scaffold_264_curated_16
Clostridium sp. ATCC BAA-442, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17073..19145)
DNA (2073bp) protein (691aa)
Sigma-54 interaction domain protein n=1 Tax=Clostridium sp. ATCC BAA-442 RepID=U2DBI4_9CLOT rbh
Sigma-54 interaction domain protein {ECO:0000313|EMBL:ERI78817.1}; TaxID=649724 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. ATCC BAA-442.;"
putative sigma-54 specific transcriptional regulator
S23_scaffold_264_curated_17
Clostridium pasteurianum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19756..20694)
DNA (939bp) protein (313aa)
chemotaxis protein n=1 Tax=Clostridium beijerinckii RepID=UPI00030A1162
methyl-accepting chemotaxis sensory transducer
Chemotaxis protein {ECO:0000313|EMBL:ETD70094.1}; TaxID=1428454 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium pasteurianum NRRL B-598.;"
S23_scaffold_264_curated_18
BJP_IG2103_Clostridiales_50_15, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20836..21930)
DNA (1095bp) protein (365aa)
Ribosome-binding ATPase YchF n=1 Tax=Firmicutes bacterium CAG:145 RepID=R6EUV0_9FIRM rbh
GTP-binding protein YchF rbh
Tax=BJP_IG2103_Clostridiales_50_15
S23_scaffold_264_curated_19
BJP_IG2103_Clostridiales_50_15, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21946..22704)
DNA (759bp) protein (253aa)
lgt1; prolipoprotein diacylglyceryl transferase Lgt (EC:2.4.99.-)
Prolipoprotein diacylglyceryl transferase n=1 Tax=Eubacterium brachy ATCC 33089 RepID=V1CLV8_9FIRM rbh
Tax=BJP_IG2103_Clostridiales_50_15
S23_scaffold_264_curated_20
BJP_IG2157_Clostridiales_35_16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22961..24106
DNA (1146bp) protein (382aa)
RND family efflux transporter MFP subunit n=1 Tax=Clostridium sp. CAG:81 RepID=R5GGN8_9CLOT
RND family efflux transporter, MFP subunit
Tax=BJP_IG2157_Clostridiales_35_16
S23_scaffold_264_curated_21
[Clostridium] sticklandii, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24122..24832
DNA (711bp) protein (237aa)
Macrolide export ATP-binding/permease protein MacB {ECO:0000256|HAMAP-Rule:MF_01720}; EC=3.6.3.- {ECO:0000256|HAMAP-Rule:MF_01720};; TaxID=499177 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Clostridium sticklandii (strain ATCC 12662 / DSM 519 / JCM 1433 / NCIB; 10654).;"
ABC transporter n=1 Tax=Clostridium sticklandii (strain ATCC 12662 / DSM 519 / JCM 1433 / NCIB 10654) RepID=E3PVL5_CLOSD rbh
yknY; ABC transporter rbh
S23_scaffold_264_curated_22
BJP_IG2157_Clostridiales_35_16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24823..26034
DNA (1212bp) protein (404aa)
Abc transporter, permease protein n=1 Tax=Clostridium sticklandii (strain ATCC 12662 / DSM 519 / JCM 1433 / NCIB 10654) RepID=E3PVL6_CLOSD rbh
abc transporter, permease protein rbh
Tax=BJP_IG2157_Clostridiales_35_16
S23_scaffold_264_curated_23
Bacillus sp. SG-1, Bacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(26150..27748)
DNA (1599bp) protein (533aa)
Uncharacterized protein n=1 Tax=Bacillus sp. SG-1 RepID=A6CLM9_9BACI
Uncharacterized protein {ECO:0000313|EMBL:EDL65268.1}; TaxID=161544 species="Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Bacillus.;" source="Bacillus sp. SG-1.;"
amidohydrolase
S23_scaffold_264_curated_24
Butyrivibrio sp. CAG:318, Butyrivibrio, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27785..28675)
DNA (891bp) protein (297aa)
carbon-nitrogen family hydrolase n=1 Tax=Kaistia granuli RepID=UPI0003650F86 rbh
N-carbamoylputrescine amidase {ECO:0000313|EMBL:CDC39182.1}; TaxID=1262761 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Butyrivibrio; environmental samples.;" source="Butyrivibrio sp. CAG:318.;"
hydrolase rbh
S23_scaffold_264_curated_25
Gordonia malaquae, Gordonia, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(28692..30113)
DNA (1422bp) protein (474aa)
hypothetical protein n=1 Tax=Bacillus fordii RepID=UPI0003601F6D
Uncharacterized protein {ECO:0000313|EMBL:GAC81042.1}; TaxID=1223542 species="Bacteria; Actinobacteria; Corynebacteriales; Gordoniaceae; Gordonia.;" source="Gordonia malaquae NBRC 108250.;"
hypothetical protein
S23_scaffold_264_curated_26
unknown

Not on your lists

comp(30135..30347)
DNA (213bp) protein (71aa)

This feature has no annotations

S23_scaffold_264_curated_27
Firmicutes bacterium CAG:238, Firmicutes, Bacteria

Not on your lists

comp(30513..31877)
DNA (1365bp) protein (455aa)
Transcriptional regulator AraC family n=1 Tax=Firmicutes bacterium CAG:238 RepID=R6ENA6_9FIRM
Transcriptional regulator AraC family {ECO:0000313|EMBL:CDA91462.1}; TaxID=1263011 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:238.;"
transcriptional regulator
S23_scaffold_264_curated_28
RBG_16_Chloroflexi_54_18_curated, Chloroflexi, Bacteria

Not on your lists

comp(32069..33043)
DNA (975bp) protein (325aa)
Putative uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 3_1_46FAA RepID=F3AXJ8_9FIRM rbh
PfkB domain-containing protein
Tax=RBG_16_Chloroflexi_54_18_curated
S23_scaffold_264_curated_29
Ruminococcus torques CAG:61, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(33027..33908)
DNA (882bp) protein (294aa)
Uncharacterized protein n=4 Tax=Clostridiales RepID=R5QFE5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ27318.1}; TaxID=1263108 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus torques CAG:61.;"
xylose isomerase
S23_scaffold_264_curated_30
Ruminococcus torques CAG:61, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(34001..34957)
DNA (957bp) protein (319aa)
Uncharacterized protein n=4 Tax=Clostridiales RepID=R5QLT0_9FIRM rbh
Uncharacterized protein {ECO:0000313|EMBL:CCZ27319.1}; TaxID=1263108 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus torques CAG:61.;"
LacI family transcriptional regulator
Displaying items 1-30 of 40 in total

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