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S23_scaffold_289_curated

Search features with annotation key words

Displaying items 1-30 of 46 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
S23_scaffold_289_curated_trna_5
unknown

Not on your lists

comp(77..148)
DNA (72bp)
transferRNA Gln
S23_scaffold_289_curated_trna_4
unknown

Not on your lists

comp(170..242)
DNA (73bp)
transferRNA His
S23_scaffold_289_curated_trna_3
unknown

Not on your lists

comp(272..345)
DNA (74bp)
transferRNA Asp
S23_scaffold_289_curated_trna_2
unknown

Not on your lists

comp(356..428)
DNA (73bp)
transferRNA Val
S23_scaffold_289_curated_trna_1
unknown

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comp(465..538)
DNA (74bp)
transferRNA Met
S23_scaffold_289_curated_1
Eubacterium limosum, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(656..2275)
DNA (1620bp) protein (540aa)
Diguanylate cyclase/phosphodiesterase n=1 Tax=Eubacterium limosum (strain KIST612) RepID=E3GKH1_EUBLK
diguanylate cyclase/phosphodiesterase
Diguanylate cyclase/phosphodiesterase {ECO:0000313|EMBL:ADO35978.1}; TaxID=903814 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium limosum (strain KIST612).;"
S23_scaffold_289_curated_2
DS1215_Thermoanaerobacter_34_5835, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2272..3024)
DNA (753bp) protein (251aa)
LAO/AO transport system ATPase n=6 Tax=Thermoanaerobacter RepID=B0K2S8_THEPX
LAO/AO transport system ATPase
Tax=DS1215_Thermoanaerobacter_34_5835
S23_scaffold_289_curated_3
[Clostridium] sordellii, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(3032..3424)
DNA (393bp) protein (131aa)
Glutamate mutase {ECO:0000313|EMBL:CEP86818.1}; EC=5.4.99.1 {ECO:0000313|EMBL:CEP86818.1};; EC=5.4.99.2 {ECO:0000313|EMBL:CEP86818.1};; TaxID=1505 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Clostridium sordellii.;"
methylmalonyl-CoA mutase C-terminal domain (EC:5.4.99.2)
methylmalonyl-CoA mutase n=1 Tax=Atribacteria bacterium SCGC AAA252-M02 RepID=UPI00037B777D
S23_scaffold_289_curated_4
Caloranaerobacter azorensis, Caloranaerobacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3435..4985)
DNA (1551bp) protein (517aa)
methylmalonyl-CoA mutase (EC:5.4.99.2) rbh
methylmalonyl-CoA mutase n=1 Tax=Atribacteria bacterium SCGC AAA252-M02 RepID=UPI0003702607 rbh
Methylmalonyl-CoA mutase {ECO:0000313|EMBL:KGG80623.1}; TaxID=1156417 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Caloranaerobacter.;" source="Caloranaerobacter azorensis H53214.;"
S23_scaffold_289_curated_5
[Clostridium] clariflavum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5113..5352
DNA (240bp) protein (80aa)
Fe2+ transport system protein A n=1 Tax=Clostridium clariflavum (strain DSM 19732 / NBRC 101661 / EBR45) RepID=G8LZK4_CLOCD
Fe2+ transport system protein A
Fe2+ transport system protein A {ECO:0000313|EMBL:AEV67905.1}; TaxID=720554 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="Clostridium clariflavum (strain DSM 19732 / NBRC 101661 / EBR45).;"
S23_scaffold_289_curated_6
Clostridium sp. CAG:557, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6315..7211
DNA (897bp) protein (299aa)
hypothetical protein n=1 Tax=Clostridium sporosphaeroides RepID=UPI0003746006 rbh
Ferrous iron transport protein B {ECO:0000313|EMBL:CDB24088.1}; TaxID=1262819 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:557.;"
ferrous iron transport protein B rbh
S23_scaffold_289_curated_7
Thermoanaerobacterium xylanolyticum, Thermoanaerobacterium, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7208..7483)
DNA (276bp) protein (92aa)
Putative uncharacterized protein n=1 Tax=Thermoanaerobacterium xylanolyticum (strain ATCC 49914 / DSM 7097 / LX-11) RepID=F6BH21_THEXL
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEF16465.1}; TaxID=858215 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacterales Family III. Incertae Sedis; Thermoanaerobacterium.;" source="Thermoanaerobacterium xylanolyticum (strain ATCC 49914 / DSM 7097 /; LX-11).;"
S23_scaffold_289_curated_8
Eubacterium limosum, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7474..8703)
DNA (1230bp) protein (410aa)
Uncharacterized protein n=1 Tax=Eubacterium limosum (strain KIST612) RepID=E3GQT7_EUBLK rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:ADO39379.1}; TaxID=903814 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium limosum (strain KIST612).;"
S23_scaffold_289_curated_9
[Clostridium] cellulolyticum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8942..10303)
DNA (1362bp) protein (454aa)
Potassium uptake protein, TrkH family n=1 Tax=Clostridium cellulolyticum (strain ATCC 35319 / DSM 5812 / JCM 6584 / H10) RepID=B8I3Z2_CLOCE rbh
TrkH family potassium uptake protein rbh
Potassium uptake protein, TrkH family {ECO:0000313|EMBL:ACL76425.1}; Flags: Precursor;; TaxID=394503 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="Clostridium cellulolyticum (strain ATCC 35319 / DSM 5812 / JCM 6584 /; H10).;"
S23_scaffold_289_curated_10
Dehalobacter restrictus, Dehalobacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10400..11104)
DNA (705bp) protein (235aa)
XRE family transcriptional regulator n=1 Tax=Dehalobacter sp. FTH1 RepID=UPI00035D3E0A rbh
XRE family transcriptional regulator
XRE family transcriptional regulator {ECO:0000313|EMBL:AHF09469.1}; TaxID=871738 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae; Dehalobacter.;" source="Dehalobacter restrictus DSM 9455.;"
S23_scaffold_289_curated_11
Clostridium intestinale, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11104..13797)
DNA (2694bp) protein (898aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1294142 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium intestinale URNW.;"
Sensor protein KdpD n=1 Tax=Clostridium intestinale URNW RepID=U2NH36_9CLOT rbh
histidine kinase
S23_scaffold_289_curated_12
[Clostridium] clariflavum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14077..14688
DNA (612bp) protein (204aa)
K+ transport system, NAD-binding component n=1 Tax=Clostridium clariflavum (strain DSM 19732 / NBRC 101661 / EBR45) RepID=G8LSR0_CLOCD
K+ transport system, NAD-binding component
K+ transport system, NAD-binding component {ECO:0000313|EMBL:AEV69412.1}; TaxID=720554 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="Clostridium clariflavum (strain DSM 19732 / NBRC 101661 / EBR45).;"
S23_scaffold_289_curated_13
[Clostridium] cellulolyticum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14700..15365
DNA (666bp) protein (222aa)
TrkA-N domain protein n=1 Tax=Clostridium cellulolyticum (strain ATCC 35319 / DSM 5812 / JCM 6584 / H10) RepID=B8I3Z4_CLOCE
TrkA-N domain-containing protein
TrkA-N domain protein {ECO:0000313|EMBL:ACL76427.1}; TaxID=394503 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="Clostridium cellulolyticum (strain ATCC 35319 / DSM 5812 / JCM 6584 /; H10).;"
S23_scaffold_289_curated_14
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15386..17227)
DNA (1842bp) protein (614aa)
Uncharacterized protein n=1 Tax=Clostridium difficile CD160 RepID=T3DCM9_CLODI rbh
Uncharacterized protein {ECO:0000313|EMBL:EQF25298.1}; TaxID=1151292 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD160.;"
hypothetical protein rbh
S23_scaffold_289_curated_15
BJP_IG2157_Clostridiales_52_13, Dethiosulfatibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17336..18322)
DNA (987bp) protein (329aa)
Putative permease n=1 Tax=Clostridiales bacterium oral taxon 876 str. F0540 RepID=U2DD03_9FIRM
Predicted permeases
Tax=BJP_IG2157_Clostridiales_52_13
S23_scaffold_289_curated_16

Not on your lists

comp(18383..18694)
DNA (312bp) protein (104aa)
Transcriptional regulator, ArsR family n=1 Tax=Alicyclobacillus acidocaldarius subsp. acidocaldarius (strain ATCC 27009 / DSM 446 / 104-1A) RepID=C8WSS9_ALIAD
Marine sediment metagenome DNA, contig: S06H3_S02817 {ECO:0000313|EMBL:GAI22218.1}; Flags: Fragment;; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
ArsR family transcriptional regulator
S23_scaffold_289_curated_17
BJP_IG2158_Thermincola_46_17, Thermincola, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18951..19592
DNA (642bp) protein (214aa)
Molybdopterin dehydrogenase FAD-binding n=1 Tax=Desulfitobacterium metallireducens DSM 15288 RepID=G6GKK2_9FIRM
dehydrogenase
Tax=BJP_IG2158_Thermincola_46_17
S23_scaffold_289_curated_18
BJP_IG2158_Thermincola_46_17, Thermincola, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19592..20011
DNA (420bp) protein (140aa)
Xanthine dehydrogenase n=1 Tax=Desulfitobacterium metallireducens DSM 15288 RepID=G6GKK1_9FIRM
xanthine dehydrogenase, iron-sulfur-binding subunit
Tax=BJP_IG2158_Thermincola_46_17
S23_scaffold_289_curated_19
[Clostridium] leptum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20088..20867)
DNA (780bp) protein (260aa)
Probable DNA repair protein CLOLEP_03535 n=1 Tax=Clostridium leptum DSM 753 RepID=A7VY59_9CLOT rbh
Non-homologous end joining protein Ku {ECO:0000256|HAMAP-Rule:MF_01875}; TaxID=428125 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] leptum DSM 753.;"
Ku protein rbh
S23_scaffold_289_curated_20
[Clostridium] bifermentans, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21001..21204)
DNA (204bp) protein (68aa)
Small, acid-soluble spore protein alpha n=2 Tax=Clostridium bifermentans RepID=T4VQY1_CLOBI
Small, acid-soluble spore protein alpha {ECO:0000313|EMBL:EQK43913.1}; TaxID=1233171 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="[Clostridium] bifermentans ATCC 638.;"
alpha/beta type small acid-soluble spore protein
S23_scaffold_289_curated_21
[Clostridium] cellulosi, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21308..21940)
DNA (633bp) protein (211aa)
Thiamine pyrophosphokinase n=2 Tax=Eubacterium siraeum RepID=D4MME3_9FIRM
thiamine pyrophosphokinase
Thiamine pyrophosphokinase {ECO:0000313|EMBL:CDZ24400.1}; TaxID=29343 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] cellulosi.;"
S23_scaffold_289_curated_22
Bacillus sp. X1(2014), Bacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(21979..22500)
DNA (522bp) protein (174aa)
hypothetical protein n=1 Tax=Bacillus sp. ZYK RepID=UPI000317512C
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AIM17030.1}; TaxID=1565991 species="Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Bacillus.;" source="Bacillus sp. X1(2014).;"
S23_scaffold_289_curated_23
BJP_IG2102_Clostridiales_34_350, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22653..23216
DNA (564bp) protein (188aa)
Putative uncharacterized protein n=1 Tax=Clostridium phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg) RepID=A9KSB4_CLOPH
hypothetical protein
Tax=BJP_IG2102_Clostridiales_34_350
S23_scaffold_289_curated_24
BJP_IG2102_Clostridiales_34_350, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23235..23897
DNA (663bp) protein (221aa)
hypothetical protein n=1 Tax=Clostridium sporosphaeroides RepID=UPI000366484C
hypothetical protein
Tax=BJP_IG2102_Clostridiales_34_350
S23_scaffold_289_curated_25
unknown

Not on your lists

23973..24140
DNA (168bp) protein (56aa)

This feature has no annotations

Displaying items 1-30 of 46 in total

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