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S23_scaffold_162_curated

Search features with annotation key words

Displaying items 1-30 of 54 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
S23_scaffold_162_curated_1
Firmicutes bacterium CAG:238, Firmicutes, Bacteria

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1..534
DNA (534bp) protein (178aa)
Putative lipoprotein n=1 Tax=Firmicutes bacterium CAG:238 RepID=R6DQA7_9FIRM
Putative lipoprotein {ECO:0000313|EMBL:CDA89820.1}; TaxID=1263011 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:238.;"
putative lipoprotein
S23_scaffold_162_curated_2
Cellulosilyticum lentocellum, Cellulosilyticum, Clostridiales, Clostridia, Firmicutes, Bacteria

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503..1273
DNA (771bp) protein (257aa)
ABC-type transporter, integral membrane subunit n=1 Tax=Cellulosilyticum lentocellum (strain ATCC 49066 / DSM 5427 / NCIMB 11756 / RHM5) RepID=F2JI96_CELLD
ABC transporter permease
ABC-type transporter, integral membrane subunit {ECO:0000313|EMBL:ADZ83124.1}; TaxID=642492 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Cellulosilyticum.;" source="Cellulosilyticum lentocellum (strain ATCC 49066 / DSM 5427 / NCIMB; 11756 / RHM5) (Clostridium lentocellum).;"
S23_scaffold_162_curated_3
Cellulosilyticum lentocellum, Cellulosilyticum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1270..1923
DNA (654bp) protein (218aa)
Fe(3+)-transporting ATPase (EC:3.6.3.30)
Fe(3+)-transporting ATPase {ECO:0000313|EMBL:ADZ83125.1}; EC=3.6.3.30 {ECO:0000313|EMBL:ADZ83125.1};; TaxID=642492 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Cellulosilyticum.;" source="Cellulosilyticum lentocellum (strain ATCC 49066 / DSM 5427 / NCIMB; 11756 / RHM5) (Clostridium lentocellum).;"
Fe(3+)-transporting ATPase n=1 Tax=Cellulosilyticum lentocellum (strain ATCC 49066 / DSM 5427 / NCIMB 11756 / RHM5) RepID=F2JI97_CELLD
S23_scaffold_162_curated_4
BJP_IG2103_Clostridiales_50_15, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2018..2626
DNA (609bp) protein (203aa)
Uncharacterized protein n=1 Tax=Listeria ivanovii (strain ATCC BAA-678 / PAM 55) RepID=G2ZAF2_LISIP
hypothetical protein
Tax=BJP_IG2103_Clostridiales_50_15
S23_scaffold_162_curated_5
Firmicutes bacterium CAG:238, Firmicutes, Bacteria

Not on your lists

comp(2807..4078)
DNA (1272bp) protein (424aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:238 RepID=R6DXV9_9FIRM rbh
Uncharacterized protein {ECO:0000313|EMBL:CDA92425.1}; TaxID=1263011 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:238.;"
hypothetical protein rbh
S23_scaffold_162_curated_6
BJP_IG2103_Clostridiales_50_15, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4288..4938
DNA (651bp) protein (217aa)
Methyltransferase cognate corrinoid protein n=1 Tax=Firmicutes bacterium CAG:238 RepID=R6ER65_9FIRM
mttC; trimethylamine corrinoid protein MttC
Tax=BJP_IG2103_Clostridiales_50_15
S23_scaffold_162_curated_7
BJP_IG2103_Clostridiales_50_15, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4978..5949
DNA (972bp) protein (324aa)
Trimethylamine methyltransferase MttB n=1 Tax=Firmicutes bacterium CAG:238 RepID=R6E5B0_9FIRM rbh
hypothetical protein rbh
Tax=BJP_IG2103_Clostridiales_50_15
S23_scaffold_162_curated_8
BJP_IG2103_Clostridiales_50_15, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6004..6438
DNA (435bp) protein (145aa)
trimethylamine methyltransferase (EC:2.1.1.-)
Trimethylamine methyltransferase n=1 Tax=Firmicutes bacterium CAG:238 RepID=R6ER72_9FIRM
Tax=BJP_IG2103_Clostridiales_50_15
S23_scaffold_162_curated_9
BJP_IG2103_Clostridiales_50_15, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6509..7567
DNA (1059bp) protein (353aa)
mtbB2; dimethylamine methyltransferase MtbB (EC:2.1.1.-) rbh
Dimethylamine:corrinoid methyltransferase n=1 Tax=Firmicutes bacterium CAG:238 RepID=R6E5B7_9FIRM rbh
Tax=BJP_IG2103_Clostridiales_50_15
S23_scaffold_162_curated_10
BJP_IG2103_Clostridiales_50_15, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7622..7915
DNA (294bp) protein (98aa)
Dimethylamine:corrinoid methyltransferase n=1 Tax=Firmicutes bacterium CAG:238 RepID=R6ER79_9FIRM
dimethylamine:corrinoid methyltransferase
Tax=BJP_IG2103_Clostridiales_50_15
S23_scaffold_162_curated_11
Acetobacterium woodii, Acetobacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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8134..9555
DNA (1422bp) protein (474aa)
Corrinoid activation/regeneration protein n=1 Tax=Acetobacterium woodii (strain ATCC 29683 / DSM 1030 / JCM 2381 / KCTC 1655) RepID=H6LIY6_ACEWD rbh
corrinoid activation/regeneration protein rbh
Corrinoid activation/regeneration protein {ECO:0000313|EMBL:AFA47349.1}; TaxID=931626 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Acetobacterium.;" source="Acetobacterium woodii (strain ATCC 29683 / DSM 1030 / JCM 2381 / KCTC; 1655).;"
S23_scaffold_162_curated_12
BJP_IG2103_Clostridiales_50_15, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9592..10239
DNA (648bp) protein (216aa)
Trimethylamine corrinoid protein MttC n=1 Tax=Thermacetogenium phaeum (strain ATCC BAA-254 / DSM 12270 / PB) RepID=K4LLU7_THEPS
mttC; trimethylamine corrinoid protein MttC
Tax=BJP_IG2103_Clostridiales_50_15
S23_scaffold_162_curated_13
Firmicutes bacterium CAG:238, Firmicutes, Bacteria

Not on your lists

10253..11095
DNA (843bp) protein (281aa)
Pyrrolysine--tRNA(Pyl) ligase n=1 Tax=Firmicutes bacterium CAG:238 RepID=R6E5D1_9FIRM rbh
Pyrrolysine--tRNA(Pyl) ligase {ECO:0000313|EMBL:CDA92449.1}; TaxID=1263011 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:238.;"
pyrrolysyl-tRNA synthetase, C-terminal region rbh
S23_scaffold_162_curated_14
BJP_IG2103_Clostridiales_50_15, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11195..11998
DNA (804bp) protein (268aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:238 RepID=R6E775_9FIRM
hypothetical protein
Tax=BJP_IG2103_Clostridiales_50_15
S23_scaffold_162_curated_15
BJP_IG2103_Clostridiales_50_15, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12200..13552
DNA (1353bp) protein (451aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:238 RepID=R6E3I4_9FIRM rbh
hypothetical protein rbh
Tax=BJP_IG2103_Clostridiales_50_15
S23_scaffold_162_curated_16
Desulfosporosinus sp. HMP52, Desulfosporosinus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13555..14232
DNA (678bp) protein (226aa)
Vitamin B12 dependent methionine synthase n=1 Tax=Desulfosporosinus meridiei (strain ATCC BAA-275 / DSM 13257 / NCIMB 13706 / S10) RepID=J7J1Q9_DESMD
Vitamin B12 dependent methionine synthase {ECO:0000313|EMBL:KGK88346.1}; TaxID=1487923 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae; Desulfosporosinus.;" source="Desulfosporosinus sp. HMP52.;"
vitamin B12 dependent methionine synthase
S23_scaffold_162_curated_17
Firmicutes bacterium CAG:238, Firmicutes, Bacteria

Not on your lists

14403..15407
DNA (1005bp) protein (335aa)
Pyrrolysine biosynthesis radical SAM protein n=1 Tax=Firmicutes bacterium CAG:238 RepID=R6DXY4_9FIRM rbh
Pyrrolysine biosynthesis radical SAM protein {ECO:0000313|EMBL:CDA92445.1}; TaxID=1263011 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:238.;"
pyrrolysine biosynthesis radical SAM protein rbh
S23_scaffold_162_curated_18
BJP_IG2103_Clostridiales_50_15, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15473..16390
DNA (918bp) protein (306aa)
Putative uncharacterized protein n=1 Tax=Eubacterium barkeri RepID=Q0QLF9_EUBBA
GTPase, G3E family
Tax=BJP_IG2103_Clostridiales_50_15
S23_scaffold_162_curated_19
Firmicutes bacterium CAG:238, Firmicutes, Bacteria

Not on your lists

16387..17505
DNA (1119bp) protein (373aa)
Pyrrolysine biosynthesis protein PylC n=1 Tax=Firmicutes bacterium CAG:238 RepID=R6ER88_9FIRM rbh
Pyrrolysine biosynthesis protein PylC {ECO:0000313|EMBL:CDA92447.1}; TaxID=1263011 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:238.;"
hypothetical protein rbh
S23_scaffold_162_curated_20
Firmicutes bacterium CAG:238, Firmicutes, Bacteria

Not on your lists

17521..17856
DNA (336bp) protein (112aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:238 RepID=R6ER94_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDA92452.1}; TaxID=1263011 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:238.;"
hypothetical protein
S23_scaffold_162_curated_21
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17938..18987
DNA (1050bp) protein (350aa)
Uncharacterized protein n=1 Tax=Clostridium difficile CD160 RepID=T3DBH6_CLODI rbh
Uncharacterized protein {ECO:0000313|EMBL:EQF24162.1}; TaxID=1151292 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD160.;"
hypothetical protein rbh
S23_scaffold_162_curated_22
Eubacterium acidaminophilum, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19131..19922)
DNA (792bp) protein (264aa)
Formate hydrogenlyase subunit 7 n=3 Tax=Dehalobacter RepID=K4KU75_9FIRM rbh
hycG; formate hydrogenlyase subunit 7
Formate hydrogenlyase subunit 7 {ECO:0000313|EMBL:AHM55989.1}; TaxID=1286171 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium acidaminophilum DSM 3953.;"
S23_scaffold_162_curated_23
Desulfosporosinus acidiphilus, Desulfosporosinus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19935..21518)
DNA (1584bp) protein (528aa)
NADH dehydrogenase (quinone) {ECO:0000256|SAAS:SAAS00022922}; EC=1.6.99.5 {ECO:0000256|SAAS:SAAS00022922};; TaxID=646529 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae; Desulfosporosinus.;" source="Desulfosporosinus acidiphilus (strain DSM 22704 / JCM 16185 / SJ4).;"
Ni,Fe-hydrogenase III large subunit n=1 Tax=Desulfosporosinus acidiphilus (strain DSM 22704 / JCM 16185 / SJ4) RepID=I4D0S4_DESAJ rbh
Ni,Fe-hydrogenase III large subunit rbh
S23_scaffold_162_curated_24
Dehalobacter restrictus, Dehalobacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(21518..22996)
DNA (1479bp) protein (493aa)
NADH-ubiquinone oxidoreductase n=1 Tax=Dehalobacter sp. E1 RepID=UPI0002E8A783 rbh
hydrogenase
Hydrogenase {ECO:0000313|EMBL:AHF10015.1}; TaxID=871738 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae; Dehalobacter.;" source="Dehalobacter restrictus DSM 9455.;"
S23_scaffold_162_curated_25
Dehalobacter sp. CF, Dehalobacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23002..23658)
DNA (657bp) protein (219aa)
Hydrogenase-4 membrane component n=3 Tax=Dehalobacter RepID=K4L2H4_9FIRM
hydrogenase-4 membrane component
Hydrogenase-4 membrane component {ECO:0000313|EMBL:AFV04771.1}; TaxID=1131462 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae; Dehalobacter.;" source="Dehalobacter sp. CF.;"
S23_scaffold_162_curated_26
Dehalobacter sp. CF, Dehalobacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23661..24605)
DNA (945bp) protein (315aa)
Formate hydrogenlyase subunit 4 n=3 Tax=Dehalobacter RepID=K4KU77_9FIRM rbh
Formate hydrogenlyase subunit 4 rbh
Formate hydrogenlyase subunit 4 {ECO:0000313|EMBL:AFV04772.1}; TaxID=1131462 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae; Dehalobacter.;" source="Dehalobacter sp. CF.;"
S23_scaffold_162_curated_27
Dehalobacter restrictus, Dehalobacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24618..26666)
DNA (2049bp) protein (683aa)
formate hydrogenlyase n=1 Tax=Dehalobacter sp. E1 RepID=UPI0002FAC53F rbh
formate hydrogenlyase
Formate hydrogenlyase {ECO:0000313|EMBL:AHF10018.1}; TaxID=871738 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae; Dehalobacter.;" source="Dehalobacter restrictus DSM 9455.;"
S23_scaffold_162_curated_28
GWB2_Clostridiales_37_7_curated, Clostridiales, Bacteria

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27137..28282
DNA (1146bp) protein (382aa)
Transposase, IS605 OrfB family id=2308836 bin=GWB2_Clostridiales_37_7 species=Clostridium carboxidivorans genus=Clostridium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWB2_Clostridiales_37_7 organism_group=Firmicute organism_desc=Good + rbh
transposase, IS605 OrfB family rbh
Tax=GWB2_Clostridiales_37_7_curated
S23_scaffold_162_curated_29
Syntrophobotulus glycolicus, Syntrophobotulus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

28459..29055
DNA (597bp) protein (199aa)
Uncharacterized protein n=1 Tax=Syntrophobotulus glycolicus (strain DSM 8271 / FlGlyR) RepID=F0T2T8_SYNGF
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADY57575.1}; Flags: Precursor;; TaxID=645991 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae; Syntrophobotulus.;" source="Syntrophobotulus glycolicus (strain DSM 8271 / FlGlyR).;"
S23_scaffold_162_curated_30
BJP_IG2103_Clostridiales_50_15, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29312..30214)
DNA (903bp) protein (301aa)
Calcineurin-like phosphoesterase family protein n=1 Tax=Clostridium bifermentans ATCC 19299 RepID=T4W288_CLOBI
DNA repair exonuclease family protein
Tax=BJP_IG2103_Clostridiales_50_15
Displaying items 1-30 of 54 in total

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