ggKbase home page

S23_scaffold_367_curated

Search features with annotation key words

Displaying items 1-30 of 33 in total
Loading...
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
S23_scaffold_367_curated_1
Firmicutes bacterium CAG:238, Firmicutes, Bacteria

Not on your lists

comp(3..239)
DNA (237bp) protein (79aa)
DNA polymerase III delta subunit n=1 Tax=Firmicutes bacterium CAG:238 RepID=R6E4L7_9FIRM
DNA polymerase III delta subunit {ECO:0000313|EMBL:CDA91551.1}; TaxID=1263011 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:238.;"
S23_scaffold_367_curated_2
BJP_IG2103_Clostridiales_50_15, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(191..2590)
DNA (2400bp) protein (800aa)
DNA internalization competence protein ComEC/Rec2-like protein n=1 Tax=Firmicutes bacterium CAG:238 RepID=R6ENM1_9FIRM rbh
DNA internalization-related competence protein ComEC/Rec2 rbh
Tax=BJP_IG2103_Clostridiales_50_15
S23_scaffold_367_curated_3
Turicibacter sanguinis, Turicibacter, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(2812..3237)
DNA (426bp) protein (142aa)
Uncharacterized protein n=2 Tax=Turicibacter RepID=D4W5M4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFF63729.1}; TaxID=702450 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Turicibacter.;" source="Turicibacter sanguinis PC909.;"
hypothetical protein
S23_scaffold_367_curated_4
BJP_IG2103_Clostridiales_50_15, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3388..6642
DNA (3255bp) protein (1085aa)
pbpA2; Penicillin-binding protein 1A (EC:2.4.1.- 3.4.-.-) rbh
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:238 RepID=R6DSU0_9FIRM rbh
Tax=BJP_IG2103_Clostridiales_50_15
S23_scaffold_367_curated_5
Firmicutes bacterium CAG:145, Firmicutes, Bacteria

Not on your lists

comp(6639..6995)
DNA (357bp) protein (119aa)
Sporulation stage V protein AE n=1 Tax=Firmicutes bacterium CAG:145 RepID=R6ENE6_9FIRM
Sporulation stage V protein AE {ECO:0000313|EMBL:CDB02103.1}; TaxID=1263005 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:145.;"
sporulation stage V, protein AE
S23_scaffold_367_curated_6
Firmicutes bacterium CAG:145, Firmicutes, Bacteria

Not on your lists

comp(6997..8049)
DNA (1053bp) protein (351aa)
Stage V sporulation protein AD n=1 Tax=Firmicutes bacterium CAG:145 RepID=R6EYB4_9FIRM rbh
Stage V sporulation protein AD {ECO:0000313|EMBL:CDB02104.1}; TaxID=1263005 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:145.;"
stage V sporulation protein AD rbh
S23_scaffold_367_curated_7
Firmicutes bacterium CAG:238, Firmicutes, Bacteria

Not on your lists

comp(8059..8532)
DNA (474bp) protein (158aa)
SpoVA family protein n=1 Tax=Firmicutes bacterium CAG:238 RepID=R6DTI5_9FIRM
SpoVA family protein {ECO:0000313|EMBL:CDA91833.1}; TaxID=1263011 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:238.;"
stage V sporulation protein AC
S23_scaffold_367_curated_8
Firmicutes bacterium CAG:238, Firmicutes, Bacteria

Not on your lists

comp(8746..10029)
DNA (1284bp) protein (428aa)
Electron transfer flavoprotein alpha subunit n=1 Tax=Firmicutes bacterium CAG:238 RepID=R6E1A8_9FIRM rbh
Electron transfer flavoprotein alpha subunit {ECO:0000313|EMBL:CDA90999.1}; TaxID=1263011 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:238.;"
etfA2; electron transfer flavoprotein subunit alpha rbh
S23_scaffold_367_curated_9
Eubacterium saphenum, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10048..10848)
DNA (801bp) protein (267aa)
Electron transfer flavoprotein domain protein n=1 Tax=Eubacterium saphenum ATCC 49989 RepID=C7H0J3_9FIRM rbh
Electron transfer flavoprotein domain protein {ECO:0000313|EMBL:EEU03483.1}; TaxID=592031 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium saphenum ATCC 49989.;"
etfB1; electron transfer flavoprotein subunit beta rbh
S23_scaffold_367_curated_10
BJP_IG2103_Clostridiales_50_15, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11038..12183)
DNA (1146bp) protein (382aa)
bcd; butyryl-CoA dehydrogenase (EC:1.3.99.2) rbh
Butyryl-CoA dehydrogenase n=1 Tax=Firmicutes bacterium CAG:145 RepID=R6F2K8_9FIRM rbh
Tax=BJP_IG2103_Clostridiales_50_15
S23_scaffold_367_curated_11
Gottschalkia acidurici, Gottschalkia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12565..13299)
DNA (735bp) protein (245aa)
RNA polymerase sigma factor n=1 Tax=Clostridium acidurici (strain ATCC 7906 / DSM 604 / KCTC 5404 / 9a) RepID=K0AZB7_CLOA9
sigF; RNA polymerase sigma-F factor SigF
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000715}; TaxID=1128398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Gottschalkia.;" source="Clostridium acidurici (strain ATCC 7906 / DSM 604 / KCTC 5404 / 9a).;"
S23_scaffold_367_curated_12
Kyrpidia tusciae, Kyrpidia, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(13289..13756)
DNA (468bp) protein (156aa)
putative anti-sigma regulatory factor (EC:2.7.11.1)
Anti-sigma F factor {ECO:0000256|HAMAP-Rule:MF_00637}; EC=2.7.11.1 {ECO:0000256|HAMAP-Rule:MF_00637};; Stage II sporulation protein AB {ECO:0000256|HAMAP-Rule:MF_00637}; TaxID=562970 species="Bacteria; Firmicutes; Bacilli; Bacillales; Alicyclobacillaceae; Kyrpidia.;" source="Kyrpidia tusciae (strain DSM 2912 / NBRC 15312 / T2) (Bacillus; tusciae).;"
Anti-sigma F factor n=1 Tax=Kyrpidia tusciae (strain DSM 2912 / NBRC 15312 / T2) RepID=D5WQC6_KYRT2
S23_scaffold_367_curated_13
Firmicutes bacterium CAG:145, Firmicutes, Bacteria

Not on your lists

comp(13746..14123)
DNA (378bp) protein (126aa)
Anti-sigma F factor antagonist n=1 Tax=Firmicutes bacterium CAG:145 RepID=R6F3W1_9FIRM
Anti-sigma F factor antagonist {ECO:0000256|RuleBase:RU003749}; Stage II sporulation protein {ECO:0000256|RuleBase:RU003749}; TaxID=1263005 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:145.;"
anti-sigma-factor antagonist
S23_scaffold_367_curated_14
Firmicutes bacterium CAG:238, Firmicutes, Bacteria

Not on your lists

comp(14222..15409)
DNA (1188bp) protein (396aa)
Probable tRNA sulfurtransferase {ECO:0000256|HAMAP-Rule:MF_00021, ECO:0000256|SAAS:SAAS00094284}; EC=2.8.1.4 {ECO:0000256|HAMAP-Rule:MF_00021, ECO:0000256|SAAS:SAAS00094270};; Sulfur carrier protein ThiS sulfurtransferase {ECO:0000256|HAMAP-Rule:MF_00021}; Thiamine biosynthesis protein ThiI {ECO:0000256|HAMAP-Rule:MF_00021}; tRNA 4-thiouridine synthase {ECO:0000256|HAMAP-Rule:MF_00021}; TaxID=1263011 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:238.;"
Probable tRNA sulfurtransferase n=1 Tax=Firmicutes bacterium CAG:238 RepID=R6E311_9FIRM rbh
thiamine biosynthesis protein ThiI rbh
S23_scaffold_367_curated_15
Firmicutes bacterium CAG:238, Firmicutes, Bacteria

Not on your lists

comp(15472..16635)
DNA (1164bp) protein (388aa)
Aminotransferase class V n=1 Tax=Firmicutes bacterium CAG:238 RepID=R6DTQ7_9FIRM rbh
Aminotransferase class V {ECO:0000313|EMBL:CDA90990.1}; TaxID=1263011 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:238.;"
class V aminotransferase rbh
S23_scaffold_367_curated_16
Firmicutes bacterium CAG:145, Firmicutes, Bacteria

Not on your lists

comp(17057..18517)
DNA (1461bp) protein (487aa)
Ribonuclease Y {ECO:0000256|HAMAP-Rule:MF_00335}; Short=RNase Y {ECO:0000256|HAMAP-Rule:MF_00335};; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00335};; TaxID=1263005 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:145.;"
Ribonuclease Y n=1 Tax=Firmicutes bacterium CAG:145 RepID=R6F2J5_9FIRM rbh
phosphodiesterase rbh
S23_scaffold_367_curated_17
BJP_IG2103_Clostridiales_50_15, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18870..19976
DNA (1107bp) protein (369aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:238 RepID=R6E307_9FIRM rbh
spoVE2; stage V sporulation protein E
Tax=BJP_IG2103_Clostridiales_50_15
S23_scaffold_367_curated_18
BJP_IG2103_Clostridiales_50_15, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20193..20909)
DNA (717bp) protein (239aa)
Site-determining protein n=1 Tax=Eubacterium infirmum F0142 RepID=H1PND3_9FIRM
septum site-determining protein MinD
Tax=BJP_IG2103_Clostridiales_50_15
S23_scaffold_367_curated_19
BJP_IG2103_Clostridiales_50_15, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20920..23676)
DNA (2757bp) protein (919aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:145 RepID=R6F3D3_9FIRM rbh
mrdA; penicillin-binding protein 2
Tax=BJP_IG2103_Clostridiales_50_15
S23_scaffold_367_curated_20
BJP_IG2103_Clostridiales_50_15, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23673..24209)
DNA (537bp) protein (179aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:145 RepID=R6EU83_9FIRM
mreD; Rod shape-determining protein MreD
Tax=BJP_IG2103_Clostridiales_50_15
S23_scaffold_367_curated_21
BJP_IG2103_Clostridiales_50_15, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24225..25049)
DNA (825bp) protein (275aa)
Cell shape-determining protein MreC n=1 Tax=Firmicutes bacterium CAG:238 RepID=R6ELV8_9FIRM
rod shape-determining protein MreC
Tax=BJP_IG2103_Clostridiales_50_15
S23_scaffold_367_curated_22
BJP_IG2103_Clostridiales_50_15, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25052..26086)
DNA (1035bp) protein (345aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:145 RepID=R6ES85_9FIRM rbh
MreB/Mrl family cell shape determining protein
Tax=BJP_IG2103_Clostridiales_50_15
S23_scaffold_367_curated_23
BJP_IG2103_Clostridiales_50_15, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26108..26806)
DNA (699bp) protein (233aa)
Putative DNA repair protein n=1 Tax=Clostridium ultunense Esp RepID=M1ZM60_9CLOT
radC; DNA repair protein RadC
Tax=BJP_IG2103_Clostridiales_50_15
S23_scaffold_367_curated_24
Firmicutes bacterium CAG:41, Firmicutes, Bacteria

Not on your lists

27017..27214
DNA (198bp) protein (66aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:41 RepID=R6MJY6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDB94591.1}; TaxID=1263021 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:41.;"
hypothetical protein
S23_scaffold_367_curated_25
Firmicutes bacterium CAG:238, Firmicutes, Bacteria

Not on your lists

27373..27969
DNA (597bp) protein (199aa)
Maf-like protein BN553_00389 n=1 Tax=Firmicutes bacterium CAG:238 RepID=R6E3K3_9FIRM
Maf-like protein BN553_00389 {ECO:0000256|HAMAP-Rule:MF_00528}; TaxID=1263011 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:238.;"
maf protein
S23_scaffold_367_curated_26
Mahella australiensis, Mahella, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

28083..28793
DNA (711bp) protein (237aa)
RNA polymerase sigma factor n=1 Tax=Mahella australiensis (strain DSM 15567 / CIP 107919 / 50-1 BON) RepID=F4A371_MAHA5
RNA polymerase sigma-27/28 subunit,RpsK/SigK
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000715}; TaxID=697281 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacterales Family IV. Incertae Sedis; Mahella.;" source="Mahella australiensis (strain DSM 15567 / CIP 107919 / 50-1 BON).;"
S23_scaffold_367_curated_27
Caloranaerobacter azorensis, Caloranaerobacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28790..30379)
DNA (1590bp) protein (530aa)
spoVD2; sporulation-specific penicillin-binding protein (EC:2.4.1.129) rbh
Sporulation-specific penicillin-binding protein n=1 Tax=Clostridium acidurici (strain ATCC 7906 / DSM 604 / KCTC 5404 / 9a) RepID=K0AZZ4_CLOA9 rbh
Uncharacterized protein {ECO:0000313|EMBL:KGG81458.1}; TaxID=1156417 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Caloranaerobacter.;" source="Caloranaerobacter azorensis H53214.;"
S23_scaffold_367_curated_28
BJP_IG2103_Clostridiales_50_15, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(30466..31707)
DNA (1242bp) protein (414aa)
SpoOJ/ParA/ParB/repB family protein n=1 Tax=Clostridiaceae bacterium L21-TH-D2 RepID=R1AYM1_9CLOT rbh
hypothetical protein rbh
Tax=BJP_IG2103_Clostridiales_50_15
S23_scaffold_367_curated_29
Eubacterium brachy, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(31722..32378)
DNA (657bp) protein (219aa)
Cytidylate kinase {ECO:0000256|HAMAP-Rule:MF_00238}; Short=CK {ECO:0000256|HAMAP-Rule:MF_00238};; EC=2.7.4.25 {ECO:0000256|HAMAP-Rule:MF_00238};; Cytidine monophosphate kinase {ECO:0000256|HAMAP-Rule:MF_00238}; TaxID=1321814 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium brachy ATCC 33089.;"
cmk; cytidylate kinase (EC:2.7.4.14)
Cytidylate kinase n=1 Tax=Eubacterium brachy ATCC 33089 RepID=V1CLK6_9FIRM
S23_scaffold_367_curated_30
BJP_IG2103_Clostridiales_50_15, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(32371..32838)
DNA (468bp) protein (156aa)
Transcriptional repressor NrdR n=1 Tax=Eubacterium brachy ATCC 33089 RepID=V1CLA9_9FIRM
ATP-cone domain-containing protein
Tax=BJP_IG2103_Clostridiales_50_15
Displaying items 1-30 of 33 in total

View Taxonomy