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S23_scaffold_80_curated

Search features with annotation key words

Displaying items 1-30 of 122 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
S23_scaffold_80_curated_1
BJP_IG2103_Clostridiales_50_15, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

304..1497
DNA (1194bp) protein (398aa)
Putative uncharacterized protein n=1 Tax=Clostridium sticklandii (strain ATCC 12662 / DSM 519 / JCM 1433 / NCIB 10654) RepID=E3PU79_CLOSD
exported protein of unknown function
Tax=BJP_IG2103_Clostridiales_50_15
S23_scaffold_80_curated_2
[Clostridium] clariflavum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1763..5542
DNA (3780bp) protein (1260aa)
Phosphoribosylformylglycinamidine synthase {ECO:0000313|EMBL:AEV69157.1}; EC=6.3.5.3 {ECO:0000313|EMBL:AEV69157.1};; TaxID=720554 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="Clostridium clariflavum (strain DSM 19732 / NBRC 101661 / EBR45).;"
phosphoribosylformylglycinamidine synthase (EC:6.3.5.3) rbh
Phosphoribosylformylglycinamidine synthase n=1 Tax=Clostridium clariflavum (strain DSM 19732 / NBRC 101661 / EBR45) RepID=G8M1E2_CLOCD rbh
S23_scaffold_80_curated_3
Clostridium ultunense, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5612..6091
DNA (480bp) protein (160aa)
N5-carboxyaminoimidazole ribonucleotide mutase {ECO:0000256|HAMAP-Rule:MF_01929, ECO:0000256|PIRNR:PIRNR001338}; Short=N5-CAIR mutase {ECO:0000256|HAMAP-Rule:MF_01929, ECO:0000256|PIRNR:PIRNR001338};; EC=5.4.99.18 {ECO:0000256|HAMAP-Rule:MF_01929, ECO:0000256|PIRNR:PIRNR001338};; 5-(carboxyamino)imidazole ribonucleotide mutase {ECO:0000256|HAMAP-Rule:MF_01929}; TaxID=1288971 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium ultunense Esp.;"
N5-carboxyaminoimidazole ribonucleotide mutase n=1 Tax=Clostridium ultunense Esp RepID=M1ZCP9_9CLOT
5-(carboxyamino)imidazole ribonucleotide mutase
S23_scaffold_80_curated_4
unknown

Not on your lists

comp(6196..6393)
DNA (198bp) protein (66aa)

This feature has no annotations

S23_scaffold_80_curated_5
Caldisalinibacter kiritimatiensis, Caldisalinibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6831..8291
DNA (1461bp) protein (487aa)
Amidophosphoribosyltransferase {ECO:0000256|HAMAP-Rule:MF_01931, ECO:0000256|PIRNR:PIRNR000485}; Short=ATase {ECO:0000256|HAMAP-Rule:MF_01931, ECO:0000256|PIRNR:PIRNR000485};; EC=2.4.2.14 {ECO:0000256|HAMAP-Rule:MF_01931, ECO:0000256|PIRNR:PIRNR000485};; Glutamine phosphoribosylpyrophosphate amidotransferase {ECO:0000256|HAMAP-Rule:MF_01931, ECO:0000256|PIRNR:PIRNR000485}; TaxID=1304284 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Caldisalinibacter.;" source="Caldisalinibacter kiritimatiensis.;"
Amidophosphoribosyltransferase n=1 Tax=Clostridiaceae bacterium L21-TH-D2 RepID=R1CTZ4_9CLOT rbh
amidophosphoribosyltransferase rbh
S23_scaffold_80_curated_6
Turicibacter sanguinis, Turicibacter, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

8984..9325
DNA (342bp) protein (114aa)
Phosphoribosylformylglycinamidine cyclo-ligase {ECO:0000256|HAMAP-Rule:MF_00741, ECO:0000256|RuleBase:RU004370}; EC=6.3.3.1 {ECO:0000256|HAMAP-Rule:MF_00741, ECO:0000256|RuleBase:RU004370};; AIR synthase {ECO:0000256|HAMAP-Rule:MF_00741}; AIRS {ECO:0000256|HAMAP-Rule:MF_00741}; Phosphoribosyl-aminoimidazole synthetase {ECO:0000256|HAMAP-Rule:MF_00741}; TaxID=702450 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Turicibacter.;" source="Turicibacter sanguinis PC909.;"
Phosphoribosylformylglycinamidine cyclo-ligase n=2 Tax=Turicibacter RepID=D4W6G1_9FIRM
phosphoribosylaminoimidazole synthetase
S23_scaffold_80_curated_7
Caldisalinibacter kiritimatiensis, Caldisalinibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9357..9965
DNA (609bp) protein (203aa)
Phosphoribosylglycinamide formyltransferase {ECO:0000256|HAMAP-Rule:MF_01930}; EC=2.1.2.2 {ECO:0000256|HAMAP-Rule:MF_01930};; 5'-phosphoribosylglycinamide transformylase {ECO:0000256|HAMAP-Rule:MF_01930}; GAR transformylase {ECO:0000256|HAMAP-Rule:MF_01930}; TaxID=1304284 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Caldisalinibacter.;" source="Caldisalinibacter kiritimatiensis.;"
formyltetrahydrofolate-dependent phosphoribosylglycinamide formyltransferase (EC:2.1.2.2)
Phosphoribosylglycinamide formyltransferase n=1 Tax=Clostridiaceae bacterium L21-TH-D2 RepID=R1AU12_9CLOT
S23_scaffold_80_curated_8
[Clostridium] clariflavum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9990..11525
DNA (1536bp) protein (512aa)
Bifunctional purine biosynthesis protein PurH n=1 Tax=Clostridium clariflavum (strain DSM 19732 / NBRC 101661 / EBR45) RepID=G8LV19_CLOCD rbh
phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase rbh
Bifunctional purine biosynthesis protein PurH {ECO:0000256|HAMAP-Rule:MF_00139, ECO:0000256|SAAS:SAAS00010516}; TaxID=720554 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="Clostridium clariflavum (strain DSM 19732 / NBRC 101661 / EBR45).;"
S23_scaffold_80_curated_9
Eubacterium brachy, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11738..12994
DNA (1257bp) protein (419aa)
Phosphoribosylamine--glycine ligase {ECO:0000256|HAMAP-Rule:MF_00138}; EC=6.3.4.13 {ECO:0000256|HAMAP-Rule:MF_00138};; GARS {ECO:0000256|HAMAP-Rule:MF_00138}; Glycinamide ribonucleotide synthetase {ECO:0000256|HAMAP-Rule:MF_00138}; Phosphoribosylglycinamide synthetase {ECO:0000256|HAMAP-Rule:MF_00138}; TaxID=1321814 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium brachy ATCC 33089.;"
purD; phosphoribosylamine--glycine ligase PurD (EC:6.3.4.13)
Phosphoribosylamine--glycine ligase n=1 Tax=Eubacterium brachy ATCC 33089 RepID=V1DCU1_9FIRM rbh
S23_scaffold_80_curated_10
Clostridium bolteae CAG:59, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12983..13942)
DNA (960bp) protein (320aa)
Uncharacterized protein n=8 Tax=Clostridium RepID=A8S4D8_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCX96994.1}; TaxID=1263064 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium bolteae CAG:59.;"
NAD-binding D-isomer specific 2-hydroxyacid dehydrogenase
S23_scaffold_80_curated_11
Clostridiales bacterium oral taxon 876, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14110..14991
DNA (882bp) protein (294aa)
Putative membrane protein n=1 Tax=Clostridiales bacterium oral taxon 876 str. F0540 RepID=U2CMJ8_9FIRM rbh
Putative membrane protein {ECO:0000313|EMBL:ERI91719.1}; TaxID=1321778 species="Bacteria; Firmicutes; Clostridia; Clostridiales.;" source="Clostridiales bacterium oral taxon 876 str. F0540.;"
hypothetical protein rbh
S23_scaffold_80_curated_12
Firmicutes bacterium CAG:145, Firmicutes, Bacteria

Not on your lists

comp(15064..16545)
DNA (1482bp) protein (494aa)
Transporter NhaC family n=1 Tax=Firmicutes bacterium CAG:145 RepID=R6EST9_9FIRM rbh
Transporter NhaC family {ECO:0000313|EMBL:CDB03718.1}; TaxID=1263005 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:145.;"
Na+/H+ antiporter NhaC rbh
S23_scaffold_80_curated_13
Clostridium tetanomorphum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16668..17411)
DNA (744bp) protein (248aa)
Two-component response regulator, CheY-like domain protein n=1 Tax=Clostridium acidurici (strain ATCC 7906 / DSM 604 / KCTC 5404 / 9a) RepID=K0AV80_CLOA9
Response regulator {ECO:0000313|EMBL:KAJ52001.1}; TaxID=1230342 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium tetanomorphum DSM 665.;"
two-component response regulator, CheY-like domain-containing protein
S23_scaffold_80_curated_14
Arcobacter butzleri, Arcobacter, Campylobacterales, Epsilonproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17392..19296)
DNA (1905bp) protein (635aa)
two-component sensor histidine kinase (EC:2.7.3.-)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=367737 species="Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; Campylobacteraceae; Arcobacter.;" source="Arcobacter butzleri (strain RM4018).;"
Two-component sensor histidine kinase n=1 Tax=Arcobacter butzleri (strain RM4018) RepID=A8ES06_ARCB4
S23_scaffold_80_curated_15
[Eubacterium] sulci, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19542..20450
DNA (909bp) protein (303aa)
Putative uncharacterized protein n=1 Tax=Eubacterium infirmum F0142 RepID=H1PJR5_9FIRM
EamA-like transporter family protein {ECO:0000313|EMBL:EUC77381.1}; TaxID=888727 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiales Family XIII. Incertae Sedis.;" source="Eubacterium sulci ATCC 35585.;"
drug/metabolite transporter
S23_scaffold_80_curated_16
BJP_IG2103_Clostridiales_50_15, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20557..21339
DNA (783bp) protein (261aa)
Segregation and condensation protein A n=1 Tax=Firmicutes bacterium CAG:145 RepID=R6EZ29_9FIRM
scpA; segregation and condensation protein A
Tax=BJP_IG2103_Clostridiales_50_15
S23_scaffold_80_curated_17
BJP_IG2103_Clostridiales_50_15, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21336..21935
DNA (600bp) protein (200aa)
Segregation and condensation protein B n=1 Tax=Firmicutes bacterium CAG:238 RepID=R6EIH0_9FIRM
scpB; segregation and condensation protein B
Tax=BJP_IG2103_Clostridiales_50_15
S23_scaffold_80_curated_18
Caloranaerobacter azorensis, Caloranaerobacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21998..23092
DNA (1095bp) protein (365aa)
dacB2; D-alanyl-D-alanine carboxypeptidase (EC:3.4.16.4) rbh
D-alanyl-D-alanine carboxypeptidase n=1 Tax=Clostridiaceae bacterium L21-TH-D2 RepID=R1CFK9_9CLOT rbh
D-alanyl-D-alanine carboxypeptidase {ECO:0000313|EMBL:KGG81391.1}; TaxID=1156417 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Caloranaerobacter.;" source="Caloranaerobacter azorensis H53214.;"
S23_scaffold_80_curated_19
Clostridium aceticum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23151..24185
DNA (1035bp) protein (345aa)
Uncharacterized protein n=1 Tax=Clostridium acidurici (strain ATCC 7906 / DSM 604 / KCTC 5404 / 9a) RepID=K0B0K0_CLOA9
Uncharacterized protein {ECO:0000313|EMBL:KJF28175.1}; TaxID=84022 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium aceticum.;"
hypothetical protein
S23_scaffold_80_curated_20
BJP_IG2069_Synergistales_47_25, Synergistales, Synergistia, Synergistetes, Bacteria

Not on your lists

comp(24195..25373)
DNA (1179bp) protein (393aa)
Diguanylate cyclase (GGDEF) domain-containing protein id=3622399 bin=GWC2_Spirochaete_52_13 species=Sphaerochaeta pleomorpha genus=Sphaerochaeta taxon_order=Spirochaetales taxon_class=Spirochaetia phylum=Spirochaetes tax=GWC2_Spirochaete_52_13 organism_group=Spirochaetes
diguanylate cyclase domain-containing protein
Tax=BJP_IG2069_Synergistales_47_25
S23_scaffold_80_curated_21
Caloramator australicus, Caloramator, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25760..26044
DNA (285bp) protein (95aa)
Cytochrome b5 n=1 Tax=Clostridium cellulolyticum (strain ATCC 35319 / DSM 5812 / JCM 6584 / H10) RepID=B8HZS8_CLOCE
cytochrome b5
Conserved protein {ECO:0000313|EMBL:CCJ34331.1}; TaxID=857293 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Caloramator.;" source="Caloramator australicus RC3.;"
S23_scaffold_80_curated_22
[Clostridium] cellulolyticum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26041..26949
DNA (909bp) protein (303aa)
Ni/Fe hydrogenase n=1 Tax=Acetivibrio cellulolyticus RepID=UPI0001E2E2AE rbh
hydrogenase (NiFe) small subunit HydA rbh
Hydrogenase (NiFe) small subunit HydA {ECO:0000313|EMBL:ACL75429.1}; TaxID=394503 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="Clostridium cellulolyticum (strain ATCC 35319 / DSM 5812 / JCM 6584 /; H10).;"
S23_scaffold_80_curated_23
[Clostridium] cellulolyticum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26921..28351
DNA (1431bp) protein (477aa)
Ni/Fe hydrogenase n=1 Tax=Acetivibrio cellulolyticus RepID=UPI0001E2E2AF rbh
nickel-dependent hydrogenase large subunit rbh
Nickel-dependent hydrogenase large subunit {ECO:0000313|EMBL:ACL75430.1}; TaxID=394503 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="Clostridium cellulolyticum (strain ATCC 35319 / DSM 5812 / JCM 6584 /; H10).;"
S23_scaffold_80_curated_24
[Clostridium] cellulolyticum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

28348..28836
DNA (489bp) protein (163aa)
hydrogenase maturation protease n=1 Tax=Acetivibrio cellulolyticus RepID=UPI0001E2E2B0
hydrogenase maturation protease
Hydrogenase maturation protease {ECO:0000313|EMBL:ACL75431.1}; TaxID=394503 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="Clostridium cellulolyticum (strain ATCC 35319 / DSM 5812 / JCM 6584 /; H10).;"
S23_scaffold_80_curated_25
Clostridium sp. 7_2_43FAA, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28778..29917)
DNA (1140bp) protein (380aa)
Uncharacterized protein n=1 Tax=Clostridium sp. 7_2_43FAA RepID=V9H6J2_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EEH96743.1}; TaxID=457396 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. 7_2_43FAA.;"
hypothetical protein
S23_scaffold_80_curated_26
Alkaliphilus metalliredigens, Alkaliphilus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

30375..32102
DNA (1728bp) protein (576aa)
Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(S) n=1 Tax=Alkaliphilus metalliredigens (strain QYMF) RepID=A6TT69_ALKMQ
PAS/PAC and GAF sensor-containing diguanylate cyclase/phosphodiesterase
Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(S) {ECO:0000313|EMBL:ABR49387.1}; TaxID=293826 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Alkaliphilus.;" source="Alkaliphilus metalliredigens (strain QYMF).;"
S23_scaffold_80_curated_27
unknown

Not on your lists

32268..32426
DNA (159bp) protein (53aa)

This feature has no annotations

S23_scaffold_80_curated_28
Caldisalinibacter kiritimatiensis, Caldisalinibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

32464..34041
DNA (1578bp) protein (526aa)
Site-specific recombinase n=1 Tax=Clostridiaceae bacterium L21-TH-D2 RepID=R1CDU9_9CLOT rbh
Site-specific recombinase {ECO:0000313|EMBL:EOD00455.1}; TaxID=1304284 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Caldisalinibacter.;" source="Caldisalinibacter kiritimatiensis.;"
site-specific recombinase, DNA invertase Pin rbh
S23_scaffold_80_curated_29
Caldisalinibacter kiritimatiensis, Caldisalinibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

34130..35380
DNA (1251bp) protein (417aa)
Glucose-inhibited division protein A n=1 Tax=Clostridiaceae bacterium L21-TH-D2 RepID=R1AWS1_9CLOT rbh
Glucose-inhibited division protein A {ECO:0000313|EMBL:EOD01087.1}; TaxID=1304284 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Caldisalinibacter.;" source="Caldisalinibacter kiritimatiensis.;"
glucose-inhibited division protein A rbh
S23_scaffold_80_curated_30
Fusobacterium ulcerans, Fusobacterium, Fusobacteriales, Fusobacteriia, Fusobacteria, Bacteria

Not on your lists

35579..36811
DNA (1233bp) protein (411aa)
Uncharacterized protein n=1 Tax=Fusobacterium ulcerans ATCC 49185 RepID=V9HSB5_9FUSO
Uncharacterized protein {ECO:0000313|EMBL:EFS26405.1}; TaxID=469617 species="Bacteria; Fusobacteria; Fusobacteriales; Fusobacteriaceae; Fusobacterium.;" source="Fusobacterium ulcerans ATCC 49185.;"
transporter
Displaying items 1-30 of 122 in total

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