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S23_scaffold_393_curated

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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
S23_scaffold_393_curated_1
Sebaldella termitidis, Sebaldella, Fusobacteriales, Fusobacteriia, Fusobacteria, Bacteria

Not on your lists

comp(388..3117)
DNA (2730bp) protein (910aa)
Protease-associated PA domain protein n=1 Tax=Sebaldella termitidis (strain ATCC 33386 / NCTC 11300) RepID=D1APB7_SEBTE rbh
protease-associated PA domain-containing protein rbh
Protease-associated PA domain protein {ECO:0000313|EMBL:ACZ09951.1}; Flags: Precursor;; TaxID=526218 species="Bacteria; Fusobacteria; Fusobacteriales; Leptotrichiaceae; Sebaldella.;" source="Sebaldella termitidis (strain ATCC 33386 / NCTC 11300).;"
S23_scaffold_393_curated_2
Brachyspira sp. CAG:700, Brachyspira, Brachyspirales, Spirochaetia, Spirochaetes, Bacteria

Not on your lists

comp(3270..4253)
DNA (984bp) protein (328aa)
LuxR family ATP-dependent transcriptional regulator n=1 Tax=Myroides injenensis RepID=UPI0002899D49
Two-component system regulator {ECO:0000313|EMBL:CCY75046.1}; TaxID=1262760 species="Bacteria; Spirochaetes; Brachyspirales; Brachyspiraceae; Brachyspira; environmental samples.;" source="Brachyspira sp. CAG:700.;"
LuxR family transcriptional regulator
S23_scaffold_393_curated_3
Syntrophomonas wolfei, Syntrophomonas, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4615..4983)
DNA (369bp) protein (123aa)
Putative uncharacterized protein n=1 Tax=Syntrophomonas wolfei subsp. wolfei (strain DSM 2245B / Goettingen) RepID=Q0AXZ1_SYNWW
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABI68413.1}; TaxID=335541 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Syntrophomonadaceae; Syntrophomonas.;" source="Syntrophomonas wolfei subsp. wolfei (strain DSM 2245B / Goettingen).;"
S23_scaffold_393_curated_4
Peptococcaceae bacterium BRH_c23, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4967..5275)
DNA (309bp) protein (103aa)
Putative uncharacterized protein n=1 Tax=Syntrophomonas wolfei subsp. wolfei (strain DSM 2245B / Goettingen) RepID=Q0AXZ2_SYNWW
Nucleotidyltransferase {ECO:0000313|EMBL:KJS50199.1}; TaxID=1629714 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae.;" source="Peptococcaceae bacterium BRH_c23.;"
hypothetical protein
S23_scaffold_393_curated_5
GWB2_Clostridiales_37_7_curated, Clostridiales, Bacteria

Not on your lists

5992..6720
DNA (729bp) protein (243aa)
Transposase, IS4 family id=2308830 bin=GWB2_Clostridiales_37_7 species=Desulfitobacterium hafniense genus=Desulfitobacterium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWB2_Clostridiales_37_7 organism_group=Firmicute organism_desc=Good +
hypothetical protein
Tax=GWB2_Clostridiales_37_7_curated
S23_scaffold_393_curated_6
Dehalobacter sp. UNSWDHB, Dehalobacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6692..7117
DNA (426bp) protein (142aa)
Transposase, IS4 n=1 Tax=Dehalobacter sp. UNSWDHB RepID=T0J991_9FIRM
Transposase, IS4 {ECO:0000313|EMBL:EQB20743.1}; TaxID=1339256 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae; Dehalobacter.;" source="Dehalobacter sp. UNSWDHB.;"
hypothetical protein
S23_scaffold_393_curated_7
BJP_IG2103_Clostridiales_50_15, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7735..8205)
DNA (471bp) protein (157aa)
SsrA-binding protein n=1 Tax=Eubacterium infirmum F0142 RepID=H1PJP8_9FIRM
SsrA-binding protein
Tax=BJP_IG2103_Clostridiales_50_15
S23_scaffold_393_curated_8
[Clostridium] litorale, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8216..8746)
DNA (531bp) protein (177aa)
Signal peptidase I {ECO:0000256|RuleBase:RU362042}; EC=3.4.21.89 {ECO:0000256|RuleBase:RU362042};; TaxID=1121324 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="[Clostridium] litorale DSM 5388.;"
Signal peptidase I precursor (EC:3.4.21.89)
Signal peptidase I n=1 Tax=Clostridium bifermentans ATCC 638 RepID=T4VUC6_CLOBI
S23_scaffold_393_curated_9
BJP_IG2103_Clostridiales_50_15, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8819..9331)
DNA (513bp) protein (171aa)
Putative uncharacterized protein n=1 Tax=Eubacterium infirmum F0142 RepID=H1PJP7_9FIRM
signal peptidase I
Tax=BJP_IG2103_Clostridiales_50_15
S23_scaffold_393_curated_10
[Clostridium] bifermentans, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9334..9873)
DNA (540bp) protein (180aa)
Signal peptidase I {ECO:0000256|RuleBase:RU003993}; EC=3.4.21.89 {ECO:0000256|RuleBase:RU003993};; TaxID=1233171 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="[Clostridium] bifermentans ATCC 638.;"
Signal peptidase I n=1 Tax=Clostridium bifermentans ATCC 638 RepID=T4VUC6_CLOBI
sip2; signal peptidase I
S23_scaffold_393_curated_11
BJP_IG2103_Clostridiales_50_15, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9892..10860)
DNA (969bp) protein (323aa)
rluC1; ribosomal large subunit pseudouridine synthase C (EC:5.4.99.24)
Pseudouridine synthase n=1 Tax=Firmicutes bacterium CAG:238 RepID=R6EHW3_9FIRM rbh
Tax=BJP_IG2103_Clostridiales_50_15
S23_scaffold_393_curated_12
BJP_IG2103_Clostridiales_50_15, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11034..11516
DNA (483bp) protein (161aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:145 RepID=R6F0Y0_9FIRM
hypothetical protein
Tax=BJP_IG2103_Clostridiales_50_15
S23_scaffold_393_curated_13
unknown

Not on your lists

comp(11525..11809)
DNA (285bp) protein (95aa)

This feature has no annotations

S23_scaffold_393_curated_14
unknown

Not on your lists

11965..12438
DNA (474bp) protein (158aa)

This feature has no annotations

S23_scaffold_393_curated_15
BJP_IG2103_Clostridiales_50_15, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12539..13468
DNA (930bp) protein (310aa)
fructose-1,6-bisphosphate aldolase, class II (EC:4.1.2.13)
Fructose-1,6-bisphosphate aldolase, class II n=1 Tax=Eubacterium infirmum F0142 RepID=H1PJP4_9FIRM rbh
Tax=BJP_IG2103_Clostridiales_50_15
S23_scaffold_393_curated_16
Anaerotruncus sp. G3(2012), Anaerotruncus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13584..14069)
DNA (486bp) protein (162aa)
Acetolactate synthase, small subunit n=1 Tax=Anaerotruncus sp. G3(2012) RepID=R9LWJ1_9FIRM
Acetolactate synthase, small subunit {ECO:0000313|EMBL:EOS63170.1}; TaxID=1235835 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Anaerotruncus.;" source="Anaerotruncus sp. G3(2012).;"
acetolactate synthase small subunit
S23_scaffold_393_curated_17
Clostridium aceticum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14075..14545)
DNA (471bp) protein (157aa)
Acetolactate synthase, small subunit n=1 Tax=Ammonifex degensii (strain DSM 10501 / KC4) RepID=C9RAW7_AMMDK
Acetolactate synthase {ECO:0000313|EMBL:KJF28298.1}; TaxID=84022 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium aceticum.;"
acetolactate synthase small subunit
S23_scaffold_393_curated_18
[Clostridium] methylpentosum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14563..16179)
DNA (1617bp) protein (539aa)
Acetolactate synthase, large subunit, biosynthetic type {ECO:0000313|EMBL:EEG29903.1}; EC=2.2.1.6 {ECO:0000313|EMBL:EEG29903.1};; TaxID=537013 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] methylpentosum DSM 5476.;"
acetolactate synthase, large subunit (EC:2.2.1.6) rbh
Acetolactate synthase, large subunit, biosynthetic type n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0EF01_9CLOT rbh
S23_scaffold_393_curated_19
BJP_IG2103_Clostridiales_50_15, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16209..17276)
DNA (1068bp) protein (356aa)
branched-chain amino acid aminotransferase (EC:2.6.1.42) rbh
Branched-chain-amino-acid aminotransferase n=1 Tax=Firmicutes bacterium CAG:145 RepID=R6FK78_9FIRM rbh
Tax=BJP_IG2103_Clostridiales_50_15
S23_scaffold_393_curated_20
Firmicutes bacterium CAG:145, Firmicutes, Bacteria

Not on your lists

comp(17315..18745)
DNA (1431bp) protein (477aa)
Nicotinate phosphoribosyltransferase {ECO:0000256|RuleBase:RU003838, ECO:0000256|SAAS:SAAS00075163}; EC=6.3.4.21 {ECO:0000256|RuleBase:RU003838, ECO:0000256|SAAS:SAAS00075163};; TaxID=1263005 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:145.;"
Nicotinate phosphoribosyltransferase n=1 Tax=Firmicutes bacterium CAG:145 RepID=R6F0Y7_9FIRM rbh
putative nicotinate phosphoribosyltransferase rbh
S23_scaffold_393_curated_21
Methanosaeta concilii, Methanosaeta, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(18738..19682)
DNA (945bp) protein (315aa)
Integral membrane protein (DUF6) n=1 Tax=Methanosaeta concilii (strain ATCC 5969 / DSM 3671 / JCM 10134 / NBRC 103675 / OCM 69 / GP-6) RepID=F4BZF2_METCG
integral membrane protein
Integral membrane protein (DUF6) {ECO:0000313|EMBL:AEB69022.1}; TaxID=990316 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosaetaceae; Methanosaeta.;" source="Methanosaeta concilii (strain ATCC 5969 / DSM 3671 / JCM 10134 / NBRC; 103675 / OCM 69 / GP-6) (Methanothrix concilii).;"
S23_scaffold_393_curated_22
BJP_IG2103_Clostridiales_50_15, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19716..22724)
DNA (3009bp) protein (1003aa)
UvrABC system protein A n=1 Tax=Firmicutes bacterium CAG:145 RepID=R6ET23_9FIRM rbh
uvrA; exinuclease ABC system subunit A rbh
Tax=BJP_IG2103_Clostridiales_50_15
S23_scaffold_393_curated_23
BJP_IG2103_Clostridiales_50_15, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22745..24766)
DNA (2022bp) protein (674aa)
UvrABC system protein B n=1 Tax=Firmicutes bacterium CAG:145 RepID=R6F1Z5_9FIRM rbh
excinuclease ABC subunit B rbh
Tax=BJP_IG2103_Clostridiales_50_15
S23_scaffold_393_curated_24
BJP_IG2103_Clostridiales_50_15, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25239..26654
DNA (1416bp) protein (472aa)
Citrate (Si)-synthase n=1 Tax=Eubacterium brachy ATCC 33089 RepID=V1CHG9_9FIRM rbh
citrate synthase rbh
Tax=BJP_IG2103_Clostridiales_50_15
S23_scaffold_393_curated_25
Clostridium sp. 7_2_43FAA, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26811..27281)
DNA (471bp) protein (157aa)
Uncharacterized protein n=3 Tax=Clostridium sp. 7_2_43FAA RepID=V9H501_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EEH99825.1}; TaxID=457396 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. 7_2_43FAA.;"
transposase IS200-family protein
S23_scaffold_393_curated_26
[Clostridium] straminisolvens, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27447..28427)
DNA (981bp) protein (327aa)
Hydrogenase expression/formation protein HypE n=7 Tax=Clostridium thermocellum RepID=A3DJT0_CLOTH rbh
hydrogenase expression/formation protein HypE rbh
[NiFe] hydrogenase metallocenter assembly protein HypE {ECO:0000313|EMBL:GAE88402.1}; TaxID=1294263 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] straminisolvens JCM 21531.;"
S23_scaffold_393_curated_27
Dehalobacter restrictus, Dehalobacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28481..29548)
DNA (1068bp) protein (356aa)
hydrogenase assembly protein HupF n=1 Tax=Dehalobacter sp. E1 RepID=UPI0002D50508 rbh
hydrogenase assembly protein HupF
Hydrogenase assembly protein HupF {ECO:0000313|EMBL:AHF10079.1}; TaxID=871738 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae; Dehalobacter.;" source="Dehalobacter restrictus DSM 9455.;"
S23_scaffold_393_curated_28
Syntrophobotulus glycolicus, Syntrophobotulus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29532..29750)
DNA (219bp) protein (73aa)
Hydrogenase assembly chaperone hypC/hupF n=1 Tax=Syntrophobotulus glycolicus (strain DSM 8271 / FlGlyR) RepID=F0T201_SYNGF
hydrogenase assembly chaperone HypC/HupF
Hydrogenase assembly chaperone hypC/hupF {ECO:0000313|EMBL:ADY56345.1}; TaxID=645991 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae; Syntrophobotulus.;" source="Syntrophobotulus glycolicus (strain DSM 8271 / FlGlyR).;"
S23_scaffold_393_curated_29
Ruminiclostridium thermocellum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29754..32132)
DNA (2379bp) protein (793aa)
(NiFe) hydrogenase maturation protein HypF n=1 Tax=Clostridium thermocellum JW20 RepID=D1NR89_CLOTM rbh
(NiFe) hydrogenase maturation protein HypF rbh
(NiFe) hydrogenase maturation protein HypF {ECO:0000313|EMBL:ABN54212.1}; TaxID=203119 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="Clostridium thermocellum (strain ATCC 27405 / DSM 1237 / NBRC 103400 /; NCIMB 10682 / NRRL B-4536 / VPI 7372) (Ruminiclostridium; thermocellum).;"
S23_scaffold_393_curated_30
Lachnoclostridium phytofermentans, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(32181..32870)
DNA (690bp) protein (230aa)
Hydrogenase accessory protein HypB n=1 Tax=Clostridium phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg) RepID=A9KS77_CLOPH rbh
hydrogenase nickel incorporation protein HypB rbh
Hydrogenase accessory protein HypB {ECO:0000313|EMBL:ABX42109.1}; TaxID=357809 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Clostridium phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg); (Lachnoclostridium phytofermentans).;"
Displaying 30 items

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