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S23_scaffold_20_curated

Search features with annotation key words

Displaying items 1-30 of 197 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
S23_scaffold_20_curated_1
Acidovorax temperans, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

88..333
DNA (246bp) protein (82aa)
hypothetical protein id=12553442 bin=BDI species=Acidovorax radicis genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria
Uncharacterized protein {ECO:0000313|EMBL:KJA08914.1}; TaxID=80878 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax temperans.;"
hypothetical protein
S23_scaffold_20_curated_2

Not on your lists

597..1148
DNA (552bp) protein (184aa)
ISMca2 transposase OrfB n=1 Tax=uncultured bacterium RepID=C6KUL1_9BACT rbh
ISMca2 transposase OrfB {ECO:0000313|EMBL:BAH89659.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
Integrase catalytic region rbh
S23_scaffold_20_curated_3
GWA2_Burkholderiales_64_37_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1417..1728
DNA (312bp) protein (104aa)
DNA-binding protein n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI0003615FED
DNA-binding protein HU-beta
Tax=GWA2_Burkholderiales_64_37_curated
S23_scaffold_20_curated_4

Not on your lists

1920..2330
DNA (411bp) protein (137aa)
XRE family transcriptional regulator n=1 Tax=uncultured bacterium RepID=K2EDQ3_9BACT
XRE family transcriptional regulator {ECO:0000313|EMBL:EKD96629.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
hypothetical protein
S23_scaffold_20_curated_5
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2366..3559)
DNA (1194bp) protein (398aa)
UPI0003D3D126 related cluster n=1 Tax=unknown RepID=UPI0003D3D126 rbh
Uncharacterized protein {ECO:0000313|EMBL:GAD22565.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
hypothetical protein
S23_scaffold_20_curated_6
Aeromonas molluscorum, Aeromonas, Aeromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3861..4649
DNA (789bp) protein (263aa)
Uncharacterized protein n=1 Tax=Aeromonas molluscorum 848 RepID=R1F3Z3_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EOD54633.1}; TaxID=1268236 species="Bacteria; Proteobacteria; Gammaproteobacteria; Aeromonadales; Aeromonadaceae; Aeromonas.;" source="Aeromonas molluscorum 848.;"
hypothetical protein
S23_scaffold_20_curated_7
Mesorhizobium sp. LSJC269B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4634..5230)
DNA (597bp) protein (199aa)
UPI0003CF04E2 related cluster n=1 Tax=unknown RepID=UPI0003CF04E2
Uncharacterized protein {ECO:0000313|EMBL:ESW85029.1}; TaxID=1287326 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSJC269B00.;"
glycosyltransferase family 2 protein
S23_scaffold_20_curated_8
Novosphingobium pentaromativorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5318..5695)
DNA (378bp) protein (126aa)
Putative uncharacterized protein n=1 Tax=Novosphingobium pentaromativorans US6-1 RepID=G6EJT7_9SPHN
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EHJ58417.1}; TaxID=1088721 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium pentaromativorans US6-1.;"
S23_scaffold_20_curated_9
Novosphingobium pentaromativorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5707..6120)
DNA (414bp) protein (138aa)
hypothetical protein n=1 Tax=Rhizobium sp. (strain BR816) RepID=UPI000376D738
Uncharacterized protein {ECO:0000313|EMBL:EHJ58418.1}; TaxID=1088721 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium pentaromativorans US6-1.;"
GCN5-related N-acetyltransferase domain-containing protein
S23_scaffold_20_curated_10
Rhizobium etli, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6186..6920)
DNA (735bp) protein (245aa)
Uncharacterized protein n=1 Tax=Rhizobium etli bv. mimosae str. Mim1 RepID=S5S6U6_RHIET
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGS25650.1}; TaxID=1328306 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium etli bv. mimosae str. Mim1.;"
S23_scaffold_20_curated_11
Novosphingobium pentaromativorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7167..9194)
DNA (2028bp) protein (676aa)
Radical SAM family protein n=1 Tax=Novosphingobium pentaromativorans US6-1 RepID=G6EJU0_9SPHN rbh
radical SAM protein
Radical SAM family protein {ECO:0000313|EMBL:EHJ58420.1}; TaxID=1088721 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium pentaromativorans US6-1.;"
S23_scaffold_20_curated_12
Pseudomonas sp. 1-7, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9314..9508)
DNA (195bp) protein (65aa)
hypothetical protein n=1 Tax=Rhizobium sp. (strain BR816) RepID=UPI00038081A0
Uncharacterized protein {ECO:0000313|EMBL:KFJ92885.1}; TaxID=633150 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. 1-7.;"
hypothetical protein
S23_scaffold_20_curated_13
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11674..13770
DNA (2097bp) protein (699aa)
UPI0003A0B239 related cluster n=1 Tax=unknown RepID=UPI0003A0B239 rbh
Uncharacterized protein {ECO:0000313|EMBL:GAD22533.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
S23_scaffold_20_curated_14
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13773..16487
DNA (2715bp) protein (905aa)
UPI0003D3FD06 related cluster id=12550156 bin=BDI species=Acidovorax sp. MR-S7 genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
S23_scaffold_20_curated_15
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16484..17353
DNA (870bp) protein (290aa)
UPI0003D3CF45 related cluster id=12550155 bin=BDI species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=BDI organism_group=Betaproteobacteria
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
S23_scaffold_20_curated_16
R_Burkholderiales_67_14, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18091..18741)
DNA (651bp) protein (217aa)
Transposase n=1 Tax=Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) RepID=B1Y169_LEPCP
transposase
Tax=RifCSPlowO2_12_Burkholderiales_67_14_curated
S23_scaffold_20_curated_17
R_Burkholderiales_67_14, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18741..19184)
DNA (444bp) protein (148aa)
Transposase n=1 Tax=Acidovorax sp. NO-1 RepID=H0BZJ7_9BURK
transposase
Tax=RifCSPlowO2_12_Burkholderiales_67_14_curated
S23_scaffold_20_curated_18
Hydrogenophaga sp. T4, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19509..20033)
DNA (525bp) protein (175aa)
Uncharacterized protein n=1 Tax=Pseudomonas pseudoalcaligenes CECT 5344 RepID=I7IE20_PSEPS
Uncharacterized protein {ECO:0000313|EMBL:EWS64840.1}; TaxID=1437444 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. T4.;"
hypothetical protein
S23_scaffold_20_curated_19
Hydrogenophaga sp. T4, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20070..20732)
DNA (663bp) protein (221aa)
Transposase IS4 family protein n=1 Tax=Thiomonas intermedia (strain K12) RepID=D5X0Y7_THIK1 rbh
Uncharacterized protein {ECO:0000313|EMBL:EWS64841.1}; TaxID=1437444 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. T4.;"
transposase IS4 family protein rbh
S23_scaffold_20_curated_20
Acidovorax sp. NO-1, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20933..21775)
DNA (843bp) protein (281aa)
Taurine dioxygenase n=1 Tax=Acidovorax sp. NO-1 RepID=H0BZJ9_9BURK rbh
Taurine dioxygenase {ECO:0000313|EMBL:EHL22204.1}; TaxID=512030 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. NO-1.;"
taurine dioxygenase rbh
S23_scaffold_20_curated_21
Acidovorax sp. NO-1, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21772..23019)
DNA (1248bp) protein (416aa)
L-carnitine dehydratase/bile acid-inducible protein F n=1 Tax=Acidovorax sp. NO-1 RepID=H0BZK0_9BURK rbh
L-carnitine dehydratase/bile acid-inducible protein F {ECO:0000313|EMBL:EHL22205.1}; TaxID=512030 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. NO-1.;"
L-carnitine dehydratase/bile acid-inducible protein F rbh
S23_scaffold_20_curated_22
Acidovorax sp. NO-1, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23157..24074
DNA (918bp) protein (306aa)
IclR family transcriptional regulator n=1 Tax=Acidovorax sp. NO-1 RepID=H0BZK1_9BURK rbh
IclR family transcriptional regulator {ECO:0000313|EMBL:EHL22206.1}; TaxID=512030 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. NO-1.;"
IclR family transcriptional regulator rbh
S23_scaffold_20_curated_23
Acidovorax sp. NO-1, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24064..24825
DNA (762bp) protein (254aa)
Enoyl-CoA hydratase/isomerase n=1 Tax=Acidovorax sp. NO-1 RepID=H0BZK2_9BURK rbh
Enoyl-CoA hydratase/isomerase {ECO:0000313|EMBL:EHL22207.1}; TaxID=512030 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. NO-1.;"
enoyl-CoA hydratase/isomerase rbh
S23_scaffold_20_curated_24
Acidovorax sp. NO-1, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24827..26239
DNA (1413bp) protein (471aa)
MmgE/PrpD family protein n=1 Tax=Acidovorax sp. NO-1 RepID=H0BZK3_9BURK rbh
MmgE/PrpD family protein {ECO:0000313|EMBL:EHL22208.1}; TaxID=512030 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. NO-1.;"
MmgE/PrpD family protein rbh
S23_scaffold_20_curated_25
Acidovorax sp. NO-1, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26443..27573)
DNA (1131bp) protein (377aa)
ABC transporter (Fragment) n=1 Tax=Acidovorax sp. NO-1 RepID=H0BZJ5_9BURK rbh
ABC transporter {ECO:0000313|EMBL:EHL22369.1}; Flags: Fragment;; TaxID=512030 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. NO-1.;"
yhhJ1; ABC-2 type transporter
S23_scaffold_20_curated_26
Acidovorax sp. NO-1, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27573..30329)
DNA (2757bp) protein (919aa)
ABC transporter-like protein n=1 Tax=Acidovorax sp. NO-1 RepID=H0BZJ4_9BURK rbh
ABC transporter-like protein {ECO:0000313|EMBL:EHL22368.1}; TaxID=512030 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. NO-1.;"
putative ABC transporter ATP-binding/permease protein
S23_scaffold_20_curated_27
Acidovorax sp. NO-1, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30326..31396)
DNA (1071bp) protein (357aa)
Secretion protein HlyD family protein n=1 Tax=Acidovorax sp. NO-1 RepID=H0BZJ3_9BURK rbh
Secretion protein HlyD family protein {ECO:0000313|EMBL:EHL22367.1}; TaxID=512030 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. NO-1.;"
glycoside hydrolase family 43
S23_scaffold_20_curated_28
Acidovorax sp. NO-1, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31848..32666)
DNA (819bp) protein (273aa)
Hydrolase-related protein n=1 Tax=Acidovorax sp. NO-1 RepID=H0BZJ2_9BURK rbh
Hydrolase-related protein {ECO:0000313|EMBL:EHL22366.1}; TaxID=512030 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. NO-1.;"
hypothetical protein
S23_scaffold_20_curated_29
Acidovorax sp. NO-1, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(32698..33930)
DNA (1233bp) protein (411aa)
Acyl-CoA dehydrogenase n=1 Tax=Acidovorax sp. NO-1 RepID=H0BZJ1_9BURK rbh
Acyl-CoA dehydrogenase {ECO:0000313|EMBL:EHL22365.1}; TaxID=512030 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. NO-1.;"
acyl-CoA dehydrogenase rbh
S23_scaffold_20_curated_30
Hydrogenophaga sp. T4, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(33947..34348)
DNA (402bp) protein (134aa)
Putative uncharacterized protein n=1 Tax=Acidovorax sp. NO-1 RepID=H0BZJ0_9BURK
Putative nucleic-acid-binding protein containing a Zn-ribbon {ECO:0000313|EMBL:EWS63055.1}; TaxID=1437444 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. T4.;"
hypothetical protein
Displaying items 1-30 of 197 in total

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