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S23_scaffold_575_curated

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Displaying 28 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
S23_scaffold_575_curated_1
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

416..1006
DNA (591bp) protein (197aa)
Uncharacterized protein n=2 Tax=Rhodanobacter denitrificans RepID=I4WUP0_9GAMM
predicted nucleotidyltransferase
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
S23_scaffold_575_curated_2
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

984..1214
DNA (231bp) protein (77aa)
Uncharacterized protein n=1 Tax=Alcanivorax dieselolei (strain DSM 16502 / CGMCC 1.3690 / B-5) RepID=K0CDU0_ALCDB
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
S23_scaffold_575_curated_3
Acidovorax temperans, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1333..1689
DNA (357bp) protein (119aa)
Transposase {ECO:0000313|EMBL:KJA08933.1}; TaxID=80878 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax temperans.;"
integrase catalytic subunit id=12550138 bin=BDI species=unknown genus=Polaromonas taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria
integrase catalytic subunit
S23_scaffold_575_curated_4
Hydrogenophaga sp. T4, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1686..2015
DNA (330bp) protein (110aa)
Putative transposase OrfB {ECO:0000313|EMBL:EWS63498.1}; TaxID=1437444 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. T4.;"
integrase catalytic subunit id=12550138 bin=BDI species=unknown genus=Polaromonas taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria
integrase catalytic subunit
S23_scaffold_575_curated_5
Acidovorax sp. NO-1, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2017..2205)
DNA (189bp) protein (63aa)
transposase, mutator type id=12553855 bin=BDI species=unknown genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria
Transposase, mutator type {ECO:0000313|EMBL:EHL23221.1}; TaxID=512030 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. NO-1.;"
transposase, mutator type
S23_scaffold_575_curated_6
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2339..3166)
DNA (828bp) protein (276aa)
Putative enoyl-CoA hydratase n=1 Tax=Rhodopseudomonas palustris (strain ATCC BAA-98 / CGA009) RepID=Q6NCI8_RHOPA
paaG1; enoyl-CoA hydratase
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
S23_scaffold_575_curated_7
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3214..4350)
DNA (1137bp) protein (379aa)
acyl-CoA dehydrogenase (EC:1.3.99.-) rbh
Putative acyl-CoA dehydrogenase n=1 Tax=Ralstonia metallidurans (strain CH34 / ATCC 43123 / DSM 2839) RepID=Q1LGX6_RALME rbh
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
S23_scaffold_575_curated_8
Cupriavidus pinatubonensis, Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4383..5585)
DNA (1203bp) protein (401aa)
Acyl-CoA dehydrogenase, C-terminal:Acyl-CoA dehydrogenase, central region n=1 Tax=Cupriavidus pinatubonensis (strain JMP 134 / LMG 1197) RepID=Q46UG9_CUPPJ rbh
acyl-CoA dehydrogenase rbh
Acyl-CoA dehydrogenase, C-terminal:Acyl-CoA dehydrogenase, central region {ECO:0000313|EMBL:AAZ63215.1}; TaxID=264198 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupriavidus pinatubonensis (strain JMP 134 / LMG 1197) (Ralstonia; eutropha (strain JMP 134)).;"
S23_scaffold_575_curated_9
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5632..6540)
DNA (909bp) protein (303aa)
Short-chain dehydrogenase/reductase SDR n=1 Tax=Burkholderia sp. CCGE1001 RepID=E8YKT9_9BURK rbh
short-chain dehydrogenase/reductase SDR rbh
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
S23_scaffold_575_curated_10
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6562..7017)
DNA (456bp) protein (152aa)
enoyl-CoA hydratase (EC:4.2.1.17)
Enoyl-CoA hydratase n=1 Tax=Burkholderia sp. (strain CCGE1003) RepID=E1TH97_BURSG
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
S23_scaffold_575_curated_11
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7066..8250)
DNA (1185bp) protein (395aa)
Thiolase n=1 Tax=Polaromonas sp. (strain JS666 / ATCC BAA-500) RepID=Q125R2_POLSJ
lipid-transfer protein
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
S23_scaffold_575_curated_12
R_Burkholderiales_67_14, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8378..9538)
DNA (1161bp) protein (387aa)
extracellular ligand-binding receptor; K01999 branched-chain amino acid transport system substrate-binding protein id=5080542 bin=GWF1_Burkholderiales_GWF1_66_17 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD
putative ABC transporter, branched-chain amino acid-binding protein
Tax=RifCSPlowO2_12_Burkholderiales_67_14_curated
S23_scaffold_575_curated_13
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9568..11427)
DNA (1860bp) protein (620aa)
AMP-dependent synthetase and ligase id=1270636 bin=GWE1_Burkholderiales_65_30 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_Burkholderiales_65_30 organism_group=Betaproteobacteria
AMP-dependent synthetase and ligase
Tax=GWE1_Burkholderiales_65_30_curated
S23_scaffold_575_curated_14
R_Burkholderiales_64_960, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11464..12252)
DNA (789bp) protein (263aa)
ABC transporter ATP-binding protein n=1 Tax=Limnohabitans sp. Rim28 RepID=UPI00030C3668
ABC transporter-like protein
Tax=RIFCSPHIGHO2_01_FULL_Burkholderiales_64_960_curated
S23_scaffold_575_curated_15
Hydrogenophaga sp. PBC, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12266..13099)
DNA (834bp) protein (278aa)
High-affinity branched-chain amino acid transport ATP-binding protein livG {ECO:0000313|EMBL:EIK92085.1}; EC=3.6.1.3 {ECO:0000313|EMBL:EIK92085.1};; TaxID=795665 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. PBC.;"
High-affinity branched-chain amino acid transport ATP-binding protein livG n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MS95_9BURK rbh
ABC transporter-like protein
S23_scaffold_575_curated_16
R_Burkholderiales_67_14, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13096..14172)
DNA (1077bp) protein (359aa)
Inner-membrane translocator id=1270633 bin=GWE1_Burkholderiales_65_30 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_Burkholderiales_65_30 organism_group=Betaproteobacteria
inner-membrane translocator
Tax=RifCSPlowO2_12_Burkholderiales_67_14_curated
S23_scaffold_575_curated_17
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14179..15054)
DNA (876bp) protein (292aa)
Putative branched-chain amino acid ABC transporter, permease protein n=1 Tax=Variovorax paradoxus B4 RepID=T1XI34_VARPD
putative branched-chain amino acid ABC transporter, permease protein
Putative branched-chain amino acid ABC transporter, permease protein {ECO:0000313|EMBL:AGU52176.1}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus B4.;"
S23_scaffold_575_curated_18
BJP_08E140C01_10KDA_Burkholderiales_65_51, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15090..16241)
DNA (1152bp) protein (384aa)
acyl-CoA dehydrogenase domain-containing protein id=12553421 bin=BDI species=Pseudomonas sp. G5(2012) genus=Pseudomonas taxon_order=Pseudomonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria rbh
acyl-CoA dehydrogenase
Tax=BJP_08E140C01_10KDA_Burkholderiales_65_51
S23_scaffold_575_curated_19
BJP_08E140C01_10KDA_Burkholderiales_65_51, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16377..17135)
DNA (759bp) protein (253aa)
3-hydroxyacyl-CoA dehydrogenase (EC:1.1.1.35) rbh
short-chain dehydrogenase/reductase SDR id=12553427 bin=BDI species=Burkholderia phytofirmans genus=Burkholderia taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria rbh
Tax=BJP_08E140C01_10KDA_Burkholderiales_65_51
S23_scaffold_575_curated_20
BJP_08E140C01_10KDA_Burkholderiales_65_51, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17176..18414)
DNA (1239bp) protein (413aa)
thiolase id=12553428 bin=BDI species=Bordetella petrii genus=Bordetella taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria rbh
thiolase rbh
Tax=BJP_08E140C01_10KDA_Burkholderiales_65_51
S23_scaffold_575_curated_21
BJP_08E140C01_10KDA_Burkholderiales_65_51, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18593..19729)
DNA (1137bp) protein (379aa)
alpha-methylacyl-CoA racemase; K01796 alpha-methylacyl-CoA racemase [EC:5.1.99.4] id=12553429 bin=BDI species=Burkholderia cenocepacia genus=Burkholderia taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria rbh
alpha-methylacyl-CoA racemase (EC:5.1.99.4)
Tax=BJP_08E140C01_10KDA_Burkholderiales_65_51
S23_scaffold_575_curated_22
BJP_08E140C01_10KDA_Burkholderiales_65_51, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19860..20642
DNA (783bp) protein (261aa)
enoyl-CoA hydratase (EC:4.2.1.17) rbh
Enoyl-CoA hydratase n=1 Tax=Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448) RepID=A9IBK9_BORPD rbh
Tax=BJP_08E140C01_10KDA_Burkholderiales_65_51
S23_scaffold_575_curated_23
BJP_08E140C01_10KDA_Burkholderiales_65_51, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20716..21426)
DNA (711bp) protein (237aa)
TetR family transcriptional regulator id=12553419 bin=BDI species=Bordetella petrii genus=Bordetella taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria rbh
TetR family transcriptional regulator
Tax=BJP_08E140C01_10KDA_Burkholderiales_65_51
S23_scaffold_575_curated_24
Bordetella petrii, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21528..22322)
DNA (795bp) protein (265aa)
enoyl-CoA hydratase/isomerase (EC:4.2.1.17) rbh
Putative enoyl-CoA hydratase/isomerase {ECO:0000313|EMBL:CAP41465.1}; EC=4.2.1.17 {ECO:0000313|EMBL:CAP41465.1};; TaxID=340100 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448).;"
Putative enoyl-CoA hydratase/isomerase n=1 Tax=Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448) RepID=A9IBP4_BORPD rbh
S23_scaffold_575_curated_25
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22446..22943)
DNA (498bp) protein (166aa)
Uncharacterized protein n=3 Tax=Pseudomonas aeruginosa RepID=U5APS6_PSEAI
Transposase IS4 family protein {ECO:0000313|EMBL:GAO21226.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
transposase IS4 family protein
S23_scaffold_575_curated_26
Acidovorax delafieldii, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22940..23194)
DNA (255bp) protein (85aa)
Uncharacterized protein n=1 Tax=Acidovorax delafieldii 2AN RepID=C5T6N6_ACIDE
Uncharacterized protein {ECO:0000313|EMBL:EER59868.1}; TaxID=573060 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax delafieldii 2AN.;"
hypothetical protein
S23_scaffold_575_curated_27
unknown

Not on your lists

comp(23237..23365)
DNA (129bp) protein (43aa)

This feature has no annotations

S23_scaffold_575_curated_28
unknown

Not on your lists

comp(23372..23551)
DNA (180bp) protein (60aa)

This feature has no annotations

Displaying 28 items

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