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S24_scaffold_198_curated

Search features with annotation key words

Displaying items 1-30 of 57 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
S24_scaffold_198_curated_1
Cellulomonas cellasea, Cellulomonas, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(25..2796)
DNA (2772bp) protein (924aa)
Iron-containing alcohol dehydrogenase n=1 Tax=Cellulomonas fimi (strain ATCC 484 / DSM 20113 / JCM 1341 / NBRC 15513 / NCIMB 8980 / NCTC 7547) RepID=F4H7Z3_CELFA rbh
Aldehyde-alcohol dehydrogenase {ECO:0000256|PIRNR:PIRNR000111}; TaxID=1408250 species="Bacteria; Actinobacteria; Micrococcales; Cellulomonadaceae; Cellulomonas.;" source="Cellulomonas cellasea DSM 20118.;"
iron-containing alcohol dehydrogenase rbh
S24_scaffold_198_curated_2
[Cellvibrio] gilvus, Cellulomonas, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(2980..4620)
DNA (1641bp) protein (547aa)
Sodium/hydrogen exchanger n=1 Tax=Cellvibrio gilvus (strain ATCC 13127 / NRRL B-14078) RepID=F8A2J2_CELGA rbh
sodium/hydrogen exchanger rbh
Sodium/hydrogen exchanger {ECO:0000313|EMBL:AEI12985.1}; TaxID=593907 species="Bacteria; Actinobacteria; Micrococcales; Cellulomonadaceae; Cellulomonas.;" source="Cellvibrio gilvus (strain ATCC 13127 / NRRL B-14078).;"
S24_scaffold_198_curated_3
Cellulomonas cellasea, Cellulomonas, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(4772..5056)
DNA (285bp) protein (95aa)
hypothetical protein n=1 Tax=Streptomyces vitaminophilus RepID=UPI00036BC9D8
Uncharacterized protein {ECO:0000313|EMBL:KGM02429.1}; TaxID=1408250 species="Bacteria; Actinobacteria; Micrococcales; Cellulomonadaceae; Cellulomonas.;" source="Cellulomonas cellasea DSM 20118.;"
hypothetical protein
S24_scaffold_198_curated_4
Nocardia nova, Nocardia, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

5122..5625
DNA (504bp) protein (168aa)
NIPSNAP family containing protein n=1 Tax=Planctomyces limnophilus (strain ATCC 43296 / DSM 3776 / IFAM 1008 / 290) RepID=D5SMM2_PLAL2
NIPSNAP domain-containing protein
NIPSNAP domain-containing protein {ECO:0000313|EMBL:AHH19181.1}; TaxID=1415166 species="Bacteria; Actinobacteria; Corynebacteriales; Nocardiaceae; Nocardia.;" source="Nocardia nova SH22a.;"
S24_scaffold_198_curated_5
Saccharopolyspora rectivirgula, Saccharopolyspora, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

5821..8817
DNA (2997bp) protein (999aa)
hypothetical protein n=1 Tax=Nocardiopsis sp. CNS639 RepID=UPI00036E3259 rbh
CRISPR-associated protein Cas3 {ECO:0000313|EMBL:KEI43371.1}; TaxID=28042 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Saccharopolyspora.;" source="Saccharopolyspora rectivirgula.;"
CRISPR-associated helicase Cas3 rbh
S24_scaffold_198_curated_6
Saccharopolyspora rectivirgula, Saccharopolyspora, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

8807..10444
DNA (1638bp) protein (546aa)
CRISPR-associated protein, Cse1 family n=1 Tax=Cellulomonas fimi (strain ATCC 484 / DSM 20113 / JCM 1341 / NBRC 15513 / NCIMB 8980 / NCTC 7547) RepID=F4H899_CELFA rbh
CRISPR-associated protein Cse1 {ECO:0000313|EMBL:KEI43372.1}; TaxID=28042 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Saccharopolyspora.;" source="Saccharopolyspora rectivirgula.;"
Cse1 family CRISPR-associated protein rbh
S24_scaffold_198_curated_7
Saccharothrix espanaensis, Saccharothrix, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

10795..11157
DNA (363bp) protein (121aa)
Uncharacterized protein n=1 Tax=Saccharothrix espanaensis (strain ATCC 51144 / DSM 44229 / JCM 9112 / NBRC 15066 / NRRL 15764) RepID=K0JTN1_SACES
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCH29291.1}; TaxID=1179773 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Saccharothrix.;" source="Saccharothrix espanaensis (strain ATCC 51144 / DSM 44229 / JCM 9112 /; NBRC 15066 / NRRL 15764).;"
S24_scaffold_198_curated_8
Actinokineospora spheciospongiae, Actinokineospora, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

11154..12284
DNA (1131bp) protein (377aa)
CRISPR-associated protein Cse4 n=1 Tax=Saccharomonospora halophila RepID=UPI00036A686D rbh
CRISPR-associated protein, Cse4 family {ECO:0000313|EMBL:EWC61633.1}; TaxID=909613 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Actinokineospora.;" source="Actinokineospora spheciospongiae.;"
CRISPR-associated Cse4 family protein rbh
S24_scaffold_198_curated_9
Saccharothrix espanaensis, Saccharothrix, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

12281..12997
DNA (717bp) protein (239aa)
CRISPR-associated protein cas5 family protein n=1 Tax=Saccharothrix espanaensis (strain ATCC 51144 / DSM 44229 / JCM 9112 / NBRC 15066 / NRRL 15764) RepID=K0JWY0_SACES
CRISPR-associated protein cas5 family protein
CRISPR-associated protein cas5 family protein {ECO:0000313|EMBL:CCH29289.1}; TaxID=1179773 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Saccharothrix.;" source="Saccharothrix espanaensis (strain ATCC 51144 / DSM 44229 / JCM 9112 /; NBRC 15066 / NRRL 15764).;"
S24_scaffold_198_curated_10
Saccharothrix espanaensis, Saccharothrix, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

12997..13650
DNA (654bp) protein (218aa)
CRISPR-associated protein Cse3 n=1 Tax=Saccharomonospora halophila RepID=UPI000360AD1F
CRISPR-associated Cse3 family protein
CRISPR-associated Cse3 family protein {ECO:0000313|EMBL:CCH29288.1}; TaxID=1179773 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Saccharothrix.;" source="Saccharothrix espanaensis (strain ATCC 51144 / DSM 44229 / JCM 9112 /; NBRC 15066 / NRRL 15764).;"
S24_scaffold_198_curated_11
Cellulomonas fimi, Cellulomonas, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

13650..14594
DNA (945bp) protein (315aa)
CRISPR-associated endonuclease Cas1 {ECO:0000256|HAMAP-Rule:MF_01470}; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_01470};; TaxID=590998 species="Bacteria; Actinobacteria; Micrococcales; Cellulomonadaceae; Cellulomonas.;" source="Cellulomonas fimi (strain ATCC 484 / DSM 20113 / JCM 1341 / NBRC 15513; / NCIMB 8980 / NCTC 7547).;"
CRISPR-associated endonuclease Cas1 n=1 Tax=Cellulomonas fimi (strain ATCC 484 / DSM 20113 / JCM 1341 / NBRC 15513 / NCIMB 8980 / NCTC 7547) RepID=F4H8A4_CELFA rbh
CRISPR-associated protein Cas1 rbh
S24_scaffold_198_curated_12
Propionibacterium acidipropionici, Propionibacterium, Propionibacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(15483..16436)
DNA (954bp) protein (318aa)
Uncharacterized protein n=1 Tax=Propionibacterium acidipropionici (strain ATCC 4875 / DSM 20272 / JCM 6432 / NBRC 12425 / NCIMB 8070) RepID=K7SNJ6_PROA4
Uncharacterized protein {ECO:0000313|EMBL:AFV90760.1}; TaxID=1171373 species="Bacteria; Actinobacteria; Propionibacteriales; Propionibacteriaceae; Propionibacterium.;" source="Propionibacterium acidipropionici (strain ATCC 4875 / DSM 20272 / JCM; 6432 / NBRC 12425 / NCIMB 8070).;"
hypothetical protein
S24_scaffold_198_curated_13
Cellulomonas fimi, Cellulomonas, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(17854..18636)
DNA (783bp) protein (261aa)
IstB domain protein ATP-binding protein n=1 Tax=Cellulomonas fimi (strain ATCC 484 / DSM 20113 / JCM 1341 / NBRC 15513 / NCIMB 8980 / NCTC 7547) RepID=F4H834_CELFA rbh
IstB domain-containing protein ATP-binding protein rbh
IstB domain protein ATP-binding protein {ECO:0000313|EMBL:AEE46995.1}; TaxID=590998 species="Bacteria; Actinobacteria; Micrococcales; Cellulomonadaceae; Cellulomonas.;" source="Cellulomonas fimi (strain ATCC 484 / DSM 20113 / JCM 1341 / NBRC 15513; / NCIMB 8980 / NCTC 7547).;"
S24_scaffold_198_curated_14
Actinotalea ferrariae, Actinotalea, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(18633..19853)
DNA (1221bp) protein (407aa)
Integrase catalytic region n=1 Tax=Cellulomonas fimi (strain ATCC 484 / DSM 20113 / JCM 1341 / NBRC 15513 / NCIMB 8980 / NCTC 7547) RepID=F4H835_CELFA rbh
Transposase {ECO:0000313|EMBL:EYR62044.1}; TaxID=948458 species="Bacteria; Actinobacteria; Micrococcales; Cellulomonadaceae; Actinotalea.;" source="Actinotalea ferrariae CF5-4.;"
integrase catalytic subunit rbh
S24_scaffold_198_curated_15
unknown

Not on your lists

20282..20674
DNA (393bp) protein (131aa)

This feature has no annotations

S24_scaffold_198_curated_16
Desulfovibrio fructosivorans, Desulfovibrio, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21519..21908
DNA (390bp) protein (130aa)
hypothetical protein, partial n=1 Tax=Nocardiopsis halophila RepID=UPI000369AE8A
Uncharacterized protein {ECO:0000313|EMBL:EFL53062.1}; TaxID=596151 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Desulfovibrio.;" source="Desulfovibrio fructosivorans JJ.;"
hypothetical protein
S24_scaffold_198_curated_17
Stackebrandtia nassauensis, Stackebrandtia, Glycomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

21905..22459
DNA (555bp) protein (185aa)
hypothetical protein n=1 Tax=Nocardiopsis halophila RepID=UPI00034A0631
TetR family transcriptional regulator
Transcriptional regulator, TetR family {ECO:0000313|EMBL:ADD43548.1}; TaxID=446470 species="Bacteria; Actinobacteria; Glycomycetales; Glycomycetaceae; Stackebrandtia.;" source="Stackebrandtia nassauensis (strain DSM 44728 / NRRL B-16338 / NBRC; 102104 / LLR-40K-21).;"
S24_scaffold_198_curated_18
Cellulomonas flavigena, Cellulomonas, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(22641..23270)
DNA (630bp) protein (210aa)
Putative uncharacterized protein n=1 Tax=Cellulomonas flavigena (strain ATCC 482 / DSM 20109 / NCIB 8073 / NRS 134) RepID=D5UID7_CELFN
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADG73436.1}; TaxID=446466 species="Bacteria; Actinobacteria; Micrococcales; Cellulomonadaceae; Cellulomonas.;" source="Cellulomonas flavigena (strain ATCC 482 / DSM 20109 / NCIB 8073 / NRS; 134).;"
S24_scaffold_198_curated_19
Cellulomonas bogoriensis, Cellulomonas, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(23284..24591)
DNA (1308bp) protein (436aa)
Uncharacterized protein {ECO:0000313|EMBL:KGM09046.1}; TaxID=1386082 species="Bacteria; Actinobacteria; Micrococcales; Cellulomonadaceae; Cellulomonas.;" source="Cellulomonas bogoriensis 69B4 = DSM 16987.;"
S24_scaffold_198_curated_20
BJP_08E140C01_Actinomycetales_70_11, Actinomycetales, Actinobacteridae, Actinobacteria, Bacteria

Not on your lists

comp(24779..26263)
DNA (1485bp) protein (495aa)
hypothetical protein n=1 Tax=Dehalobacter sp. FTH1 RepID=UPI0003700D6A
fumarate reductase-like flavoprotein
Tax=BJP_08E140C01_Actinomycetales_70_11
S24_scaffold_198_curated_21
BJP_08E140C01_Actinomycetales_70_11, Actinomycetales, Actinobacteridae, Actinobacteria, Bacteria

Not on your lists

comp(26485..27159)
DNA (675bp) protein (225aa)
hypothetical protein n=1 Tax=Dehalobacter sp. FTH1 RepID=UPI00037FBD32
two component transcriptional regulator, LuxR family
Tax=BJP_08E140C01_Actinomycetales_70_11
S24_scaffold_198_curated_22
BJP_08E140C01_Actinomycetales_70_11, Actinomycetales, Actinobacteridae, Actinobacteria, Bacteria

Not on your lists

comp(27162..28481)
DNA (1320bp) protein (440aa)
GAF sensor signal transduction histidine kinase (EC:2.7.13.3)
hypothetical protein n=1 Tax=Dehalobacter sp. FTH1 RepID=UPI0003693D6C rbh
Tax=BJP_08E140C01_Actinomycetales_70_11
S24_scaffold_198_curated_23
Cellulomonas fimi, Cellulomonas, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

28614..29141
DNA (528bp) protein (176aa)
RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Cellulomonas fimi (strain ATCC 484 / DSM 20113 / JCM 1341 / NBRC 15513 / NCIMB 8980 / NCTC 7547) RepID=F4H4H2_CELFA
ECF subfamily RNA polymerase sigma-24 subunit
RNA polymerase, sigma-24 subunit, ECF subfamily {ECO:0000313|EMBL:AEE47767.1}; TaxID=590998 species="Bacteria; Actinobacteria; Micrococcales; Cellulomonadaceae; Cellulomonas.;" source="Cellulomonas fimi (strain ATCC 484 / DSM 20113 / JCM 1341 / NBRC 15513; / NCIMB 8980 / NCTC 7547).;"
S24_scaffold_198_curated_24
[Cellvibrio] gilvus, Cellulomonas, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

29138..29965
DNA (828bp) protein (276aa)
Uncharacterized protein n=1 Tax=Cellvibrio gilvus (strain ATCC 13127 / NRRL B-14078) RepID=F8A735_CELGA
Uncharacterized protein {ECO:0000313|EMBL:AEI13522.1}; TaxID=593907 species="Bacteria; Actinobacteria; Micrococcales; Cellulomonadaceae; Cellulomonas.;" source="Cellvibrio gilvus (strain ATCC 13127 / NRRL B-14078).;"
S24_scaffold_198_curated_25
Actinotalea ferrariae, Actinotalea, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(30162..30959)
DNA (798bp) protein (266aa)
hypothetical protein n=1 Tax=Ornithinimicrobium pekingense RepID=UPI0003B4248B rbh
Uncharacterized protein {ECO:0000313|EMBL:EYR62506.1}; TaxID=948458 species="Bacteria; Actinobacteria; Micrococcales; Cellulomonadaceae; Actinotalea.;" source="Actinotalea ferrariae CF5-4.;"
conserved membrane protein of unknown function
S24_scaffold_198_curated_26
Sinomonas sp. MUSC 117, Sinomonas, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

31176..31586
DNA (411bp) protein (137aa)
hypothetical protein n=1 Tax=Dehalobacter sp. FTH1 RepID=UPI000377349A
Heat-shock protein Hsp20 {ECO:0000313|EMBL:KHL00315.1}; TaxID=1338436 species="Bacteria; Actinobacteria; Micrococcales; Micrococcaceae; Sinomonas.;" source="Sinomonas sp. MUSC 117.;"
heat shock protein Hsp20
S24_scaffold_198_curated_27
Actinotalea ferrariae, Actinotalea, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(31720..32553)
DNA (834bp) protein (278aa)
UspA domain protein n=1 Tax=Arthrobacter sp. (strain FB24) RepID=A0JWK9_ARTS2
Universal stress protein {ECO:0000313|EMBL:EYR62645.1}; TaxID=948458 species="Bacteria; Actinobacteria; Micrococcales; Cellulomonadaceae; Actinotalea.;" source="Actinotalea ferrariae CF5-4.;"
UspA domain-containing protein
S24_scaffold_198_curated_28
Ralstonia solanacearum, Ralstonia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(32750..33697)
DNA (948bp) protein (316aa)
cscK; fructokinase (EC:2.7.1.4)
Probable fructokinase protein {ECO:0000313|EMBL:CAD15853.1}; EC=2.7.1.4 {ECO:0000313|EMBL:CAD15853.1};; TaxID=267608 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Ralstonia.;" source="Ralstonia solanacearum (strain GMI1000) (Pseudomonas solanacearum).;"
Fructokinase n=2 Tax=Ralstonia solanacearum RepID=V5ALL3_RALSL
S24_scaffold_198_curated_29
Actinoplanes friuliensis, Actinoplanes, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(33707..35017)
DNA (1311bp) protein (437aa)
Alpha-galactosidase n=1 Tax=Actinoplanes friuliensis DSM 7358 RepID=U5W473_9ACTO rbh
alpha-galactosidase rbh
Alpha-galactosidase {ECO:0000313|EMBL:AGZ42780.1}; TaxID=1246995 species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Actinoplanes.;" source="Actinoplanes friuliensis DSM 7358.;"
S24_scaffold_198_curated_30
Cryptosporangium arvum, Cryptosporangium, Frankiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(35096..35833)
DNA (738bp) protein (246aa)
Transcriptional regulator, DeoR family n=1 Tax=Streptomyces cattleya (strain ATCC 35852 / DSM 46488 / JCM 4925 / NBRC 14057 / NRRL 8057) RepID=G8XFM9_STREN
Transcriptional regulator of sugar metabolism {ECO:0000313|EMBL:EXG82972.1}; TaxID=927661 species="Bacteria; Actinobacteria; Frankiales; Cryptosporangiaceae; Cryptosporangium.;" source="Cryptosporangium arvum DSM 44712.;"
transcriptional regulator, DeoR family
Displaying items 1-30 of 57 in total

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