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S24_scaffold_400_curated

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Displaying 29 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
S24_scaffold_400_curated_1
Cellulomonas flavigena, Cellulomonas, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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2..301
DNA (300bp) protein (100aa)
Transcriptional regulator, LacI family n=1 Tax=Cellulomonas flavigena (strain ATCC 482 / DSM 20109 / NCIB 8073 / NRS 134) RepID=D5UJ11_CELFN
LacI family transcriptional regulator
Transcriptional regulator, LacI family {ECO:0000313|EMBL:ADG75577.1}; Flags: Precursor;; TaxID=446466 species="Bacteria; Actinobacteria; Micrococcales; Cellulomonadaceae; Cellulomonas.;" source="Cellulomonas flavigena (strain ATCC 482 / DSM 20109 / NCIB 8073 / NRS; 134).;"
S24_scaffold_400_curated_2
Cellulosimicrobium sp. MM, Cellulosimicrobium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(399..830)
DNA (432bp) protein (144aa)
Acyl dehydratase n=1 Tax=Bacillus sp. EGD-AK10 RepID=U2AC13_9BACI
Acyl dehydratase {ECO:0000313|EMBL:KFD43898.1}; TaxID=1523621 species="Bacteria; Actinobacteria; Micrococcales; Promicromonosporaceae; Cellulosimicrobium.;" source="Cellulosimicrobium sp. MM.;"
acyl dehydratase
S24_scaffold_400_curated_3
Cellulomonas fimi, Cellulomonas, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(827..1288)
DNA (462bp) protein (154aa)
UPF0336 protein Celf_0972 n=1 Tax=Cellulomonas fimi (strain ATCC 484 / DSM 20113 / JCM 1341 / NBRC 15513 / NCIMB 8980 / NCTC 7547) RepID=F4H1D8_CELFA
MaoC domain-containing protein dehydratase
UPF0336 protein Celf_0972 {ECO:0000256|HAMAP-Rule:MF_00799}; TaxID=590998 species="Bacteria; Actinobacteria; Micrococcales; Cellulomonadaceae; Cellulomonas.;" source="Cellulomonas fimi (strain ATCC 484 / DSM 20113 / JCM 1341 / NBRC 15513; / NCIMB 8980 / NCTC 7547).;"
S24_scaffold_400_curated_trna_3
unknown

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comp(1386..1459)
DNA (74bp)
transferRNA Met
S24_scaffold_400_curated_trna_2
unknown

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comp(1509..1581)
DNA (73bp)
transferRNA Thr
S24_scaffold_400_curated_trna_1
unknown

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comp(1731..1812)
DNA (82bp)
transferRNA Tyr
S24_scaffold_400_curated_4
Renibacterium salmoninarum, Renibacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

1904..2287
DNA (384bp) protein (128aa)
Putative uncharacterized protein n=1 Tax=Renibacterium salmoninarum (strain ATCC 33209 / DSM 20767 / JCM 11484 / NBRC 15589 / NCIMB 2235) RepID=A9WU06_RENSM
hypothetical protein
UPF0145 protein RSal33209_2955 {ECO:0000256|HAMAP-Rule:MF_00338}; TaxID=288705 species="Bacteria; Actinobacteria; Micrococcales; Micrococcaceae; Renibacterium.;" source="Renibacterium salmoninarum (strain ATCC 33209 / DSM 20767 / JCM 11484; / NBRC 15589 / NCIMB 2235).;"
S24_scaffold_400_curated_5
Cellulomonas cellasea, Cellulomonas, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

2439..2936
DNA (498bp) protein (166aa)
UPF0234 protein N880_33035 n=1 Tax=Bacillus sp. EGD-AK10 RepID=U2A558_9BACI
UPF0234 protein Q760_13330 {ECO:0000256|HAMAP-Rule:MF_00632}; TaxID=1408250 species="Bacteria; Actinobacteria; Micrococcales; Cellulomonadaceae; Cellulomonas.;" source="Cellulomonas cellasea DSM 20118.;"
hypothetical protein
S24_scaffold_400_curated_6
Sanguibacter keddieii, Sanguibacter, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(2997..3869)
DNA (873bp) protein (291aa)
Protease HtpX homolog {ECO:0000256|HAMAP-Rule:MF_00188}; EC=3.4.24.- {ECO:0000256|HAMAP-Rule:MF_00188};; TaxID=446469 species="Bacteria; Actinobacteria; Micrococcales; Sanguibacteraceae; Sanguibacter.;" source="Sanguibacter keddieii (strain ATCC 51767 / DSM 10542 / NCFB 3025 /; ST-74).;"
Protease HtpX homolog n=1 Tax=Sanguibacter keddieii (strain ATCC 51767 / DSM 10542 / NCFB 3025 / ST-74) RepID=D1BBE9_SANKS rbh
Heat shock protein rbh
S24_scaffold_400_curated_7
Cellulomonas flavigena, Cellulomonas, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(3983..5407)
DNA (1425bp) protein (475aa)
FAD-dependent pyridine nucleotide-disulfide oxidoreductase n=1 Tax=Cellulomonas flavigena (strain ATCC 482 / DSM 20109 / NCIB 8073 / NRS 134) RepID=D5UJ18_CELFN rbh
FAD-dependent pyridine nucleotide-disulfide oxidoreductase rbh
FAD-dependent pyridine nucleotide-disulfide oxidoreductase {ECO:0000313|EMBL:ADG75584.1}; TaxID=446466 species="Bacteria; Actinobacteria; Micrococcales; Cellulomonadaceae; Cellulomonas.;" source="Cellulomonas flavigena (strain ATCC 482 / DSM 20109 / NCIB 8073 / NRS; 134).;"
S24_scaffold_400_curated_8
Cellulomonas cellasea, Cellulomonas, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

5702..6688
DNA (987bp) protein (329aa)
hypothetical protein n=1 Tax=Cellulomonas sp. JC225 RepID=UPI0002FF2332 rbh
Protein rarD {ECO:0000313|EMBL:KGM02463.1}; Flags: Fragment;; TaxID=1408250 species="Bacteria; Actinobacteria; Micrococcales; Cellulomonadaceae; Cellulomonas.;" source="Cellulomonas cellasea DSM 20118.;"
RarD protein, DMT superfamily transporter rbh
S24_scaffold_400_curated_9
Xylanimonas cellulosilytica, Xylanimonas, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(6678..7151)
DNA (474bp) protein (158aa)
Uncharacterized protein n=1 Tax=Xylanimonas cellulosilytica (strain DSM 15894 / CECT 5975 / LMG 20990 / XIL07) RepID=D1BW34_XYLCX
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACZ29537.1}; TaxID=446471 species="Bacteria; Actinobacteria; Micrococcales; Promicromonosporaceae; Xylanimonas.;" source="Xylanimonas cellulosilytica (strain DSM 15894 / CECT 5975 / LMG 20990; / XIL07).;"
S24_scaffold_400_curated_10
Cellulomonas fimi, Cellulomonas, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(7193..8200)
DNA (1008bp) protein (336aa)
Polyprenyl synthetase n=1 Tax=Cellulomonas fimi (strain ATCC 484 / DSM 20113 / JCM 1341 / NBRC 15513 / NCIMB 8980 / NCTC 7547) RepID=F4H1B3_CELFA rbh
polyprenyl synthetase rbh
Polyprenyl synthetase {ECO:0000313|EMBL:AEE45084.1}; TaxID=590998 species="Bacteria; Actinobacteria; Micrococcales; Cellulomonadaceae; Cellulomonas.;" source="Cellulomonas fimi (strain ATCC 484 / DSM 20113 / JCM 1341 / NBRC 15513; / NCIMB 8980 / NCTC 7547).;"
S24_scaffold_400_curated_11
Cellulomonas bogoriensis, Cellulomonas, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(8197..9816)
DNA (1620bp) protein (540aa)
NADH-quinone oxidoreductase subunit N {ECO:0000256|HAMAP-Rule:MF_00445}; EC=1.6.5.11 {ECO:0000256|HAMAP-Rule:MF_00445};; NADH dehydrogenase I subunit N {ECO:0000256|HAMAP-Rule:MF_00445}; NDH-1 subunit N {ECO:0000256|HAMAP-Rule:MF_00445}; TaxID=1386082 species="Bacteria; Actinobacteria; Micrococcales; Cellulomonadaceae; Cellulomonas.;" source="Cellulomonas bogoriensis 69B4 = DSM 16987.;"
NADH-quinone oxidoreductase subunit N n=1 Tax=Cellvibrio gilvus (strain ATCC 13127 / NRRL B-14078) RepID=F7ZZ00_CELGA rbh
proton-translocating NADH-quinone oxidoreductase, chain N rbh
S24_scaffold_400_curated_12
Cellulomonas bogoriensis, Cellulomonas, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(9813..11369)
DNA (1557bp) protein (519aa)
proton-translocating NADH-quinone oxidoreductase subunit M (EC:1.6.99.5) rbh
Proton-translocating NADH-quinone oxidoreductase, chain M n=1 Tax=Cellulomonas flavigena (strain ATCC 482 / DSM 20109 / NCIB 8073 / NRS 134) RepID=D5UJ24_CELFN rbh
NADH:ubiquinone oxidoreductase subunit M {ECO:0000313|EMBL:KGM11840.1}; TaxID=1386082 species="Bacteria; Actinobacteria; Micrococcales; Cellulomonadaceae; Cellulomonas.;" source="Cellulomonas bogoriensis 69B4 = DSM 16987.;"
S24_scaffold_400_curated_13
Cellulomonas cellasea, Cellulomonas, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(11386..13380)
DNA (1995bp) protein (665aa)
Proton-translocating NADH-quinone oxidoreductase, chain L n=1 Tax=Cellvibrio gilvus (strain ATCC 13127 / NRRL B-14078) RepID=F7ZYZ8_CELGA rbh
NADH:ubiquinone oxidoreductase subunit L {ECO:0000313|EMBL:KGM00776.1}; TaxID=1408250 species="Bacteria; Actinobacteria; Micrococcales; Cellulomonadaceae; Cellulomonas.;" source="Cellulomonas cellasea DSM 20118.;"
proton-translocating NADH-quinone oxidoreductase, chain L rbh
S24_scaffold_400_curated_14
Cellulomonas cellasea, Cellulomonas, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(13391..13690)
DNA (300bp) protein (100aa)
NADH-quinone oxidoreductase subunit K {ECO:0000256|HAMAP-Rule:MF_01456}; EC=1.6.5.11 {ECO:0000256|HAMAP-Rule:MF_01456};; NADH dehydrogenase I subunit K {ECO:0000256|HAMAP-Rule:MF_01456}; NDH-1 subunit K {ECO:0000256|HAMAP-Rule:MF_01456}; TaxID=1408250 species="Bacteria; Actinobacteria; Micrococcales; Cellulomonadaceae; Cellulomonas.;" source="Cellulomonas cellasea DSM 20118.;"
NADH-quinone oxidoreductase subunit K n=1 Tax=Cellulomonas flavigena (strain ATCC 482 / DSM 20109 / NCIB 8073 / NRS 134) RepID=D5UJ26_CELFN
NADH-ubiquinone oxidoreductase chain 4L
S24_scaffold_400_curated_15
Cellulomonas cellasea, Cellulomonas, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(13687..14508)
DNA (822bp) protein (274aa)
NADH-ubiquinone/plastoquinone oxidoreductase chain 6 n=1 Tax=Cellulomonas fimi (strain ATCC 484 / DSM 20113 / JCM 1341 / NBRC 15513 / NCIMB 8980 / NCTC 7547) RepID=F4H1A8_CELFA rbh
NADH dehydrogenase subunit J {ECO:0000313|EMBL:KGM00778.1}; TaxID=1408250 species="Bacteria; Actinobacteria; Micrococcales; Cellulomonadaceae; Cellulomonas.;" source="Cellulomonas cellasea DSM 20118.;"
NADH-ubiquinone/plastoquinone oxidoreductase chain 6 rbh
S24_scaffold_400_curated_16
Cellulomonas fimi, Cellulomonas, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(14505..15284)
DNA (780bp) protein (260aa)
NADH-quinone oxidoreductase subunit I {ECO:0000256|HAMAP-Rule:MF_01351}; EC=1.6.5.11 {ECO:0000256|HAMAP-Rule:MF_01351};; NADH dehydrogenase I subunit I {ECO:0000256|HAMAP-Rule:MF_01351}; NDH-1 subunit I {ECO:0000256|HAMAP-Rule:MF_01351}; TaxID=590998 species="Bacteria; Actinobacteria; Micrococcales; Cellulomonadaceae; Cellulomonas.;" source="Cellulomonas fimi (strain ATCC 484 / DSM 20113 / JCM 1341 / NBRC 15513; / NCIMB 8980 / NCTC 7547).;"
NADH-quinone oxidoreductase subunit I n=1 Tax=Cellulomonas fimi (strain ATCC 484 / DSM 20113 / JCM 1341 / NBRC 15513 / NCIMB 8980 / NCTC 7547) RepID=F4H1A7_CELFA rbh
NADH-quinone oxidoreductase subunit I rbh
S24_scaffold_400_curated_17
Cellulomonas cellasea, Cellulomonas, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(15277..16671)
DNA (1395bp) protein (465aa)
NADH-quinone oxidoreductase subunit H {ECO:0000256|HAMAP-Rule:MF_01350}; EC=1.6.5.11 {ECO:0000256|HAMAP-Rule:MF_01350};; NADH dehydrogenase I subunit H {ECO:0000256|HAMAP-Rule:MF_01350}; NDH-1 subunit H {ECO:0000256|HAMAP-Rule:MF_01350}; TaxID=1408250 species="Bacteria; Actinobacteria; Micrococcales; Cellulomonadaceae; Cellulomonas.;" source="Cellulomonas cellasea DSM 20118.;"
NADH dehydrogenase (quinone) (EC:1.6.99.5) rbh
NADH-quinone oxidoreductase subunit H n=1 Tax=Cellulomonas flavigena (strain ATCC 482 / DSM 20109 / NCIB 8073 / NRS 134) RepID=D5UJ29_CELFN rbh
S24_scaffold_400_curated_18
[Cellvibrio] gilvus, Cellulomonas, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(16668..19355)
DNA (2688bp) protein (896aa)
NADH dehydrogenase subunit G n=1 Tax=Cellulomonas sp. JC225 RepID=UPI000305DC55 rbh
NADH-quinone oxidoreductase, chain G {ECO:0000313|EMBL:AEI11261.1}; TaxID=593907 species="Bacteria; Actinobacteria; Micrococcales; Cellulomonadaceae; Cellulomonas.;" source="Cellvibrio gilvus (strain ATCC 13127 / NRRL B-14078).;"
NADH-quinone oxidoreductase, chain G rbh
S24_scaffold_400_curated_19
[Cellvibrio] gilvus, Cellulomonas, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(19352..20695)
DNA (1344bp) protein (448aa)
NADH-quinone oxidoreductase, F subunit {ECO:0000313|EMBL:AEI11260.1}; EC=1.6.99.5 {ECO:0000313|EMBL:AEI11260.1};; TaxID=593907 species="Bacteria; Actinobacteria; Micrococcales; Cellulomonadaceae; Cellulomonas.;" source="Cellvibrio gilvus (strain ATCC 13127 / NRRL B-14078).;"
NADH-quinone oxidoreductase, F subunit n=1 Tax=Cellvibrio gilvus (strain ATCC 13127 / NRRL B-14078) RepID=F7ZYZ2_CELGA rbh
NADH-quinone oxidoreductase, F subunit rbh
S24_scaffold_400_curated_20
Cellulosimicrobium sp. MM, Cellulosimicrobium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(20695..21423)
DNA (729bp) protein (243aa)
NADH-quinone oxidoreductase, E subunit n=1 Tax=Cellulomonas flavigena (strain ATCC 482 / DSM 20109 / NCIB 8073 / NRS 134) RepID=D5UJ32_CELFN rbh
NADH dehydrogenase {ECO:0000313|EMBL:KFD43570.1}; TaxID=1523621 species="Bacteria; Actinobacteria; Micrococcales; Promicromonosporaceae; Cellulosimicrobium.;" source="Cellulosimicrobium sp. MM.;"
NADH-quinone oxidoreductase subunit E rbh
S24_scaffold_400_curated_21
Cellulomonas bogoriensis, Cellulomonas, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(21423..22778)
DNA (1356bp) protein (452aa)
NADH-quinone oxidoreductase subunit D {ECO:0000256|HAMAP-Rule:MF_01358}; EC=1.6.5.11 {ECO:0000256|HAMAP-Rule:MF_01358};; NADH dehydrogenase I subunit D {ECO:0000256|HAMAP-Rule:MF_01358}; NDH-1 subunit D {ECO:0000256|HAMAP-Rule:MF_01358}; TaxID=1386082 species="Bacteria; Actinobacteria; Micrococcales; Cellulomonadaceae; Cellulomonas.;" source="Cellulomonas bogoriensis 69B4 = DSM 16987.;"
NADH dehydrogenase I, D subunit (EC:1.6.99.5) rbh
NADH-quinone oxidoreductase subunit D n=1 Tax=Cellulomonas fimi (strain ATCC 484 / DSM 20113 / JCM 1341 / NBRC 15513 / NCIMB 8980 / NCTC 7547) RepID=F4H1A2_CELFA rbh
S24_scaffold_400_curated_22
Cellulomonas flavigena, Cellulomonas, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(22778..23563)
DNA (786bp) protein (262aa)
NADH-quinone oxidoreductase subunit C {ECO:0000256|HAMAP-Rule:MF_01357}; EC=1.6.5.11 {ECO:0000256|HAMAP-Rule:MF_01357};; NADH dehydrogenase I subunit C {ECO:0000256|HAMAP-Rule:MF_01357}; NDH-1 subunit C {ECO:0000256|HAMAP-Rule:MF_01357}; TaxID=446466 species="Bacteria; Actinobacteria; Micrococcales; Cellulomonadaceae; Cellulomonas.;" source="Cellulomonas flavigena (strain ATCC 482 / DSM 20109 / NCIB 8073 / NRS; 134).;"
NADH-quinone oxidoreductase subunit C n=1 Tax=Cellulomonas flavigena (strain ATCC 482 / DSM 20109 / NCIB 8073 / NRS 134) RepID=D5UJ34_CELFN rbh
NADH (or F420H2) dehydrogenase subunit C rbh
S24_scaffold_400_curated_23
Sanguibacter keddieii, Sanguibacter, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(23560..24111)
DNA (552bp) protein (184aa)
NADH dehydrogenase subunit B (EC:1.6.5.3) rbh
NADH-quinone oxidoreductase subunit B {ECO:0000256|HAMAP-Rule:MF_01356}; EC=1.6.5.11 {ECO:0000256|HAMAP-Rule:MF_01356};; NADH dehydrogenase I subunit B {ECO:0000256|HAMAP-Rule:MF_01356}; NDH-1 subunit B {ECO:0000256|HAMAP-Rule:MF_01356}; TaxID=446469 species="Bacteria; Actinobacteria; Micrococcales; Sanguibacteraceae; Sanguibacter.;" source="Sanguibacter keddieii (strain ATCC 51767 / DSM 10542 / NCFB 3025 /; ST-74).;"
NADH-quinone oxidoreductase subunit B n=1 Tax=Sanguibacter keddieii (strain ATCC 51767 / DSM 10542 / NCFB 3025 / ST-74) RepID=D1BBC9_SANKS rbh
S24_scaffold_400_curated_24
Cellulomonas fimi, Cellulomonas, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(24190..24549)
DNA (360bp) protein (120aa)
NADH-quinone oxidoreductase subunit A {ECO:0000256|HAMAP-Rule:MF_01394}; EC=1.6.5.11 {ECO:0000256|HAMAP-Rule:MF_01394};; NADH dehydrogenase I subunit A {ECO:0000256|HAMAP-Rule:MF_01394}; NDH-1 subunit A {ECO:0000256|HAMAP-Rule:MF_01394}; NUO1 {ECO:0000256|HAMAP-Rule:MF_01394}; Flags: Precursor;; TaxID=590998 species="Bacteria; Actinobacteria; Micrococcales; Cellulomonadaceae; Cellulomonas.;" source="Cellulomonas fimi (strain ATCC 484 / DSM 20113 / JCM 1341 / NBRC 15513; / NCIMB 8980 / NCTC 7547).;"
NADH-quinone oxidoreductase subunit A n=1 Tax=Cellulomonas fimi (strain ATCC 484 / DSM 20113 / JCM 1341 / NBRC 15513 / NCIMB 8980 / NCTC 7547) RepID=F4H199_CELFA
NADH-ubiquinone/plastoquinone oxidoreductase chain 3
S24_scaffold_400_curated_25
Cellulomonas fimi, Cellulomonas, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(24638..25930)
DNA (1293bp) protein (431aa)
Geranylgeranyl reductase n=1 Tax=Cellulomonas fimi (strain ATCC 484 / DSM 20113 / JCM 1341 / NBRC 15513 / NCIMB 8980 / NCTC 7547) RepID=F4H198_CELFA rbh
geranylgeranyl reductase rbh
Geranylgeranyl reductase {ECO:0000313|EMBL:AEE45069.1}; TaxID=590998 species="Bacteria; Actinobacteria; Micrococcales; Cellulomonadaceae; Cellulomonas.;" source="Cellulomonas fimi (strain ATCC 484 / DSM 20113 / JCM 1341 / NBRC 15513; / NCIMB 8980 / NCTC 7547).;"
S24_scaffold_400_curated_26
Actinotalea ferrariae, Actinotalea, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(26075..26725)
DNA (651bp) protein (217aa)
Demethylmenaquinone methyltransferase {ECO:0000256|HAMAP-Rule:MF_01813}; EC=2.1.1.163 {ECO:0000256|HAMAP-Rule:MF_01813};; TaxID=948458 species="Bacteria; Actinobacteria; Micrococcales; Cellulomonadaceae; Actinotalea.;" source="Actinotalea ferrariae CF5-4.;"
Demethylmenaquinone methyltransferase n=1 Tax=Cellulomonas fimi (strain ATCC 484 / DSM 20113 / JCM 1341 / NBRC 15513 / NCIMB 8980 / NCTC 7547) RepID=F4H197_CELFA rbh
ubiquinone/menaquinone biosynthesis methyltransferase rbh
Displaying 29 items

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