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S27_scaffold_3_curated

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Displaying items 1-30 of 384 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
S27_scaffold_3_curated_1
GWC2_Nitrospirae_56_14_curated, Nitrospirae, Bacteria

Not on your lists

3..890
DNA (888bp) protein (296aa)
ABC-type uncharacterized transport system periplasmic component-like protein id=3841570 bin=GWC2_Nitrospirae-rel_56_14 species=Geobacter uraniireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Nitrospirae-rel_56_14 organism_group=Nitrospirae organism_desc=Pretty good; based on recA rbh
ABC transporter periplasmic component-like protein
Tax=GWC2_Nitrospirae_56_14_curated
S27_scaffold_3_curated_2
unknown

Not on your lists

comp(774..1040)
DNA (267bp) protein (89aa)

This feature has no annotations

S27_scaffold_3_curated_3
GWC2_Nitrospirae_56_14_curated, Nitrospirae, Bacteria

Not on your lists

1125..1376
DNA (252bp) protein (84aa)
Cytochrome c, 24 heme-binding sites id=3841575 bin=GWC2_Nitrospirae-rel_56_14 species=Geobacter sulfurreducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Nitrospirae-rel_56_14 organism_group=Nitrospirae organism_desc=Pretty good; based on recA
Tax=GWC2_Nitrospirae_56_14_curated
S27_scaffold_3_curated_4
Geobacter sp. M18, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2015..6442
DNA (4428bp) protein (1476aa)
Cytochrome C family protein n=1 Tax=Geobacter sp. (strain M18) RepID=E8WR50_GEOS8
Cytochrome C family protein {ECO:0000313|EMBL:ADW12092.1}; TaxID=443143 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter sp. (strain M18).;"
cytochrome C family protein
S27_scaffold_3_curated_5
Geobacter sp. M18, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6514..12330
DNA (5817bp) protein (1939aa)
Putative uncharacterized protein n=1 Tax=Geobacter sp. (strain M18) RepID=E8WR51_GEOS8 rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:ADW12093.1}; TaxID=443143 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter sp. (strain M18).;"
S27_scaffold_3_curated_6
Geobacter sulfurreducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12474..13016
DNA (543bp) protein (181aa)
Lipoprotein, putative n=1 Tax=Geobacter sulfurreducens (strain ATCC 51573 / DSM 12127 / PCA) RepID=Q74FA6_GEOSL
lipoprotein
Uncharacterized protein {ECO:0000313|EMBL:AJY70450.1}; TaxID=35554 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter sulfurreducens.;"
S27_scaffold_3_curated_7
GWD2_Desulfuromonadales_54_10_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13023..14363
DNA (1341bp) protein (447aa)
ResB-like family cytochrome c biogenesis protein id=1846565 bin=GWD2_Desulfuromonadales_54_10 species=Geobacter sulfurreducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Desulfuromonadales_54_10 organism_group=Deltaproteobacteria rbh
ResB-like family cytochrome c biogenesis protein rbh
Tax=GWD2_Desulfuromonadales_54_10_curated
S27_scaffold_3_curated_8
GWD2_Desulfuromonadales_54_10_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14356..15186
DNA (831bp) protein (277aa)
ResC/HemX-like cytochrome c biogenesis membrane protein id=1846567 bin=GWD2_Desulfuromonadales_54_10 species=Geobacter sulfurreducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Desulfuromonadales_54_10 organism_group=Deltaproteobacteria rbh
ResC/HemX-like cytochrome c biogenesis membrane protein rbh
Tax=GWD2_Desulfuromonadales_54_10_curated
S27_scaffold_3_curated_9
GWC2_Nitrospirae_56_14_curated, Nitrospirae, Bacteria

Not on your lists

15220..15564
DNA (345bp) protein (115aa)
Putative uncharacterized protein id=3841578 bin=GWC2_Nitrospirae-rel_56_14 species=Geobacter uraniireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Nitrospirae-rel_56_14 organism_group=Nitrospirae organism_desc=Pretty good; based on recA
hypothetical protein
Tax=GWC2_Nitrospirae_56_14_curated
S27_scaffold_3_curated_10
GWC2_Nitrospirae_56_14_curated, Nitrospirae, Bacteria

Not on your lists

15631..17136
DNA (1506bp) protein (502aa)
Radical SAM domain protein id=3841581 bin=GWC2_Nitrospirae-rel_56_14 species=Geobacter uraniireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Nitrospirae-rel_56_14 organism_group=Nitrospirae organism_desc=Pretty good; based on recA
radical SAM domain-containing protein
Tax=GWC2_Nitrospirae_56_14_curated
S27_scaffold_3_curated_11
GWC2_Nitrospirae_56_14_curated, Nitrospirae, Bacteria

Not on your lists

17233..17697
DNA (465bp) protein (155aa)
Transcriptional regulator, BadM/Rrf2 family id=3841584 bin=GWC2_Nitrospirae-rel_56_14 species=Geobacter sp. genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Nitrospirae-rel_56_14 organism_group=Nitrospirae organism_desc=Pretty good; based on recA
Rrf2 family winged helix-turn-helix transcriptional regulator
Tax=GWC2_Nitrospirae_56_14_curated
S27_scaffold_3_curated_12
GWC2_Nitrospirae_56_14_curated, Nitrospirae, Bacteria

Not on your lists

17768..18721
DNA (954bp) protein (318aa)
Cysteine synthase n=1 Tax=Geobacter sp. (strain M18) RepID=E8WLK5_GEOS8 rbh
cysteine synthase rbh
Tax=GWC2_Nitrospirae_56_14_curated
S27_scaffold_3_curated_13
Geobacter uraniireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18753..19823)
DNA (1071bp) protein (357aa)
Pilus retraction ATPase PilT n=1 Tax=Geobacter uraniireducens (strain Rf4) RepID=A5G9E9_GEOUR rbh
twitching motility protein rbh
Pilus retraction ATPase PilT {ECO:0000313|EMBL:ABQ28417.1}; TaxID=351605 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter uraniireducens (strain Rf4) (Geobacter uraniumreducens).;"
S27_scaffold_3_curated_14
Geobacter uraniireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19860..21518)
DNA (1659bp) protein (553aa)
General secretory system II, protein E domain protein n=1 Tax=Geobacter uraniireducens (strain Rf4) RepID=A5G9E8_GEOUR rbh
general secretion pathway protein E rbh
General secretory system II, protein E domain protein {ECO:0000313|EMBL:ABQ28416.1}; TaxID=351605 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter uraniireducens (strain Rf4) (Geobacter uraniumreducens).;"
S27_scaffold_3_curated_15
Geobacter soli, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21675..22679
DNA (1005bp) protein (335aa)
Thiamin biosynthesis protein ThiI-related adenine nucleotide alpha hydrolase superfamily protein n=2 Tax=Geobacter metallireducens RepID=Q39Q60_GEOMG rbh
Thiamine biosynthesis protein ThiI {ECO:0000313|EMBL:KIE41136.1}; TaxID=1510391 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter soli.;"
thiamin biosynthesis protein ThiI-related adenine nucleotide alpha hydrolase superfamily protein rbh
S27_scaffold_3_curated_16
Geobacter uraniireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22823..23893)
DNA (1071bp) protein (357aa)
Response regulator receiver modulated metal dependent phosphohydrolase n=1 Tax=Geobacter uraniireducens (strain Rf4) RepID=A5G9E5_GEOUR rbh
response regulator receiver modulated metal dependent phosphohydrolase rbh
Response regulator receiver modulated metal dependent phosphohydrolase {ECO:0000313|EMBL:ABQ28413.1}; TaxID=351605 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter uraniireducens (strain Rf4) (Geobacter uraniumreducens).;"
S27_scaffold_3_curated_17
Geobacter metallireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24080..25060)
DNA (981bp) protein (327aa)
Biosynthetic peptidoglycan transglycosylase n=1 Tax=Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210) RepID=Q39Q59_GEOMG rbh
biosynthetic peptidoglycan transglycosylase rbh
Biosynthetic peptidoglycan transglycosylase {ECO:0000313|EMBL:ABB33615.2}; TaxID=269799 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210).;"
S27_scaffold_3_curated_18
Geobacter uraniireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25057..26082)
DNA (1026bp) protein (342aa)
4-hydroxythreonine-4-phosphate dehydrogenase (EC:1.1.1.262) rbh
4-hydroxythreonine-4-phosphate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00536, ECO:0000256|SAAS:SAAS00086154}; EC=1.1.1.262 {ECO:0000256|HAMAP-Rule:MF_00536, ECO:0000256|SAAS:SAAS00086154};; 4-(phosphohydroxy)-L-threonine dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00536}; Flags: Precursor;; TaxID=351605 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter uraniireducens (strain Rf4) (Geobacter uraniumreducens).;"
4-hydroxythreonine-4-phosphate dehydrogenase n=1 Tax=Geobacter uraniireducens (strain Rf4) RepID=A5G9E3_GEOUR rbh
S27_scaffold_3_curated_19
GWC2_Geobacteraceae_58_44_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26208..27347)
DNA (1140bp) protein (380aa)
Uncharacterized protein n=1 Tax=Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1) RepID=Q3A1F5_PELCD rbh
hypothetical protein rbh
Tax=GWC2_Geobacteraceae_58_44_curated
S27_scaffold_3_curated_20
Geobacter daltonii, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27580..27996)
DNA (417bp) protein (139aa)
ATP synthase epsilon chain n=1 Tax=Geobacter daltonii (strain DSM 22248 / JCM 15807 / FRC-32) RepID=ATPE_GEODF
atpC; F0F1 ATP synthase subunit epsilon
ATP synthase epsilon chain {ECO:0000255|HAMAP-Rule:MF_00530}; ATP synthase F1 sector epsilon subunit {ECO:0000255|HAMAP-Rule:MF_00530}; F-ATPase epsilon subunit {ECO:0000255|HAMAP-Rule:MF_00530}; TaxID=316067 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter daltonii (strain DSM 22248 / JCM 15807 / FRC-32).;"
S27_scaffold_3_curated_21
Geobacter soli, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28099..29511)
DNA (1413bp) protein (471aa)
ATP synthase subunit beta {ECO:0000256|HAMAP-Rule:MF_01347}; EC=3.6.3.14 {ECO:0000256|HAMAP-Rule:MF_01347};; ATP synthase F1 sector subunit beta {ECO:0000256|HAMAP-Rule:MF_01347}; F-ATPase subunit beta {ECO:0000256|HAMAP-Rule:MF_01347}; TaxID=1510391 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter soli.;"
ATP synthase subunit beta n=2 Tax=Geobacter sulfurreducens RepID=ATPB_GEOSL rbh
atpD; ATP synthase F1 subunit beta rbh
S27_scaffold_3_curated_22
Geobacter metallireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29574..30437)
DNA (864bp) protein (288aa)
ATP synthase gamma chain n=2 Tax=Geobacter metallireducens RepID=ATPG_GEOMG rbh
atpG; F0F1 ATP synthase subunit gamma rbh
ATP synthase gamma chain {ECO:0000255|HAMAP-Rule:MF_00815}; ATP synthase F1 sector gamma subunit {ECO:0000255|HAMAP-Rule:MF_00815}; F-ATPase gamma subunit {ECO:0000255|HAMAP-Rule:MF_00815}; TaxID=269799 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210).;"
S27_scaffold_3_curated_23
Geobacter uraniireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30459..31967)
DNA (1509bp) protein (503aa)
F0F1 ATP synthase subunit alpha (EC:3.6.3.14) rbh
ATP synthase subunit alpha {ECO:0000255|HAMAP-Rule:MF_01346}; EC=3.6.3.14 {ECO:0000255|HAMAP-Rule:MF_01346};; ATP synthase F1 sector subunit alpha {ECO:0000255|HAMAP-Rule:MF_01346}; F-ATPase subunit alpha {ECO:0000255|HAMAP-Rule:MF_01346}; TaxID=351605 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter uraniireducens (strain Rf4) (Geobacter uraniumreducens).;"
ATP synthase subunit alpha n=1 Tax=Geobacter uraniireducens (strain Rf4) RepID=ATPA_GEOUR rbh
S27_scaffold_3_curated_24
Geobacter metallireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31977..32519)
DNA (543bp) protein (181aa)
ATP synthase subunit delta n=2 Tax=Geobacter metallireducens RepID=ATPD_GEOMG
atpH; F0F1 ATP synthase subunit delta
ATP synthase subunit delta {ECO:0000255|HAMAP-Rule:MF_01416}; ATP synthase F(1) sector subunit delta {ECO:0000255|HAMAP-Rule:MF_01416}; F-type ATPase subunit delta {ECO:0000255|HAMAP-Rule:MF_01416}; Short=F-ATPase subunit delta {ECO:0000255|HAMAP-Rule:MF_01416};; TaxID=269799 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210).;"
S27_scaffold_3_curated_25
Geobacter metallireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(32516..33133)
DNA (618bp) protein (206aa)
ATP synthase subunit b n=2 Tax=Geobacter metallireducens RepID=ATPF_GEOMG
atpF; ATP synthase F0 subunit B
ATP synthase subunit b {ECO:0000255|HAMAP-Rule:MF_01398}; ATP synthase F(0) sector subunit b {ECO:0000255|HAMAP-Rule:MF_01398}; ATPase subunit I {ECO:0000255|HAMAP-Rule:MF_01398}; F-type ATPase subunit b {ECO:0000255|HAMAP-Rule:MF_01398}; Short=F-ATPase subunit b {ECO:0000255|HAMAP-Rule:MF_01398};; TaxID=269799 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210).;"
S27_scaffold_3_curated_26
Geobacter daltonii, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(33135..33560)
DNA (426bp) protein (142aa)
ATP synthase subunit b n=1 Tax=Geobacter daltonii (strain DSM 22248 / JCM 15807 / FRC-32) RepID=B9LZK7_GEODF
H+transporting two-sector ATPase subunit B/B'
ATP synthase subunit b {ECO:0000256|HAMAP-Rule:MF_01398}; ATP synthase F(0) sector subunit b {ECO:0000256|HAMAP-Rule:MF_01398}; ATPase subunit I {ECO:0000256|HAMAP-Rule:MF_01398}; F-type ATPase subunit b {ECO:0000256|HAMAP-Rule:MF_01398}; TaxID=316067 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter daltonii (strain DSM 22248 / JCM 15807 / FRC-32).;"
S27_scaffold_3_curated_27
Geobacter uraniireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(33704..34540)
DNA (837bp) protein (279aa)
Chromosome segregation DNA-binding protein n=1 Tax=Geobacter uraniireducens (strain Rf4) RepID=A5G9D2_GEOUR rbh
parB-like partition protein rbh
Chromosome segregation DNA-binding protein {ECO:0000313|EMBL:ABQ28400.1}; TaxID=351605 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter uraniireducens (strain Rf4) (Geobacter uraniumreducens).;"
S27_scaffold_3_curated_28
Geobacter sulfurreducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(34533..35462)
DNA (930bp) protein (310aa)
Chromosome partitioning ATPase Soj n=2 Tax=Geobacter sulfurreducens RepID=D7AM16_GEOSK rbh
chromosome partitioning ATPase Soj rbh
Chromosome partitioning ATPase Soj {ECO:0000313|EMBL:AAR33441.1}; TaxID=243231 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter sulfurreducens (strain ATCC 51573 / DSM 12127 / PCA).;"
S27_scaffold_3_curated_29
Geobacter uraniireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

35519..36733
DNA (1215bp) protein (405aa)
Putative PAS/PAC sensor protein n=1 Tax=Geobacter uraniireducens (strain Rf4) RepID=A5G9C9_GEOUR rbh
putative PAS/PAC sensor protein rbh
Putative PAS/PAC sensor protein {ECO:0000313|EMBL:ABQ28397.1}; Flags: Precursor;; TaxID=351605 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter uraniireducens (strain Rf4) (Geobacter uraniumreducens).;"
S27_scaffold_3_curated_30
Geobacter uraniireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

36828..37502
DNA (675bp) protein (225aa)
Nitrite and sulphite reductase 4Fe-4S region n=1 Tax=Geobacter uraniireducens (strain Rf4) RepID=A5GBX3_GEOUR rbh
nitrite and sulfite reductase 4Fe-4S region rbh
Nitrite and sulphite reductase 4Fe-4S region {ECO:0000313|EMBL:ABQ24920.1}; TaxID=351605 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter uraniireducens (strain Rf4) (Geobacter uraniumreducens).;"
Displaying items 1-30 of 384 in total

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