ggKbase home page

S28_scaffold_512_curated

Search features with annotation key words

Displaying 11 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
S28_scaffold_512_curated_1
Methanosarcina siciliae, Methanosarcina, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

1..273
DNA (273bp) protein (91aa)
Uncharacterized protein n=1 Tax=Methanosarcina acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A) RepID=Q8TSX2_METAC
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AKB31250.1}; TaxID=1434119 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanosarcina.;" source="Methanosarcina siciliae HI350.;"
S28_scaffold_512_curated_2
Methanosarcina sp. 1.H.T.1A.1, Methanosarcina, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

838..2556
DNA (1719bp) protein (573aa)
Pyruvate carboxylase subunit B {ECO:0000313|EMBL:KKH92245.1}; EC=6.4.1.1 {ECO:0000313|EMBL:KKH92245.1};; TaxID=1483602 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanosarcina.;" source="Methanosarcina sp. 1.H.T.1A.1.;"
Pyruvate carboxyl transferase subunit B (EC:6.4.1.1)
Pyruvate carboxylase subunit B n=1 Tax=Methanosarcina mazei (strain ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88) RepID=Q8PVX8_METMA rbh
S28_scaffold_512_curated_3
Methanosarcina horonobensis, Methanosarcina, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

2578..4059
DNA (1482bp) protein (494aa)
Pyruvate carboxyl transferase subunit A {ECO:0000313|EMBL:AKB80030.1}; EC=6.4.1.1 {ECO:0000313|EMBL:AKB80030.1};; TaxID=1434110 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanosarcina.;" source="Methanosarcina horonobensis HB-1 = JCM 15518.;"
Pyruvate carboxyl transferase subunit A (EC:6.4.1.1)
Pyruvate carboxylase subunit A n=1 Tax=Methanosarcina acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A) RepID=Q8TSX0_METAC rbh
S28_scaffold_512_curated_4
Methanosarcina siciliae, Methanosarcina, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

4177..5154
DNA (978bp) protein (326aa)
Biotin operon repressor {ECO:0000313|EMBL:AKB31253.1}; EC=6.3.4.15 {ECO:0000313|EMBL:AKB31253.1};; TaxID=1434119 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanosarcina.;" source="Methanosarcina siciliae HI350.;"
Biotin operon repressor / Biotin-protein ligase n=2 Tax=Methanosarcina mazei RepID=M1P9S0_METMZ rbh
Biotin operon repressor / Biotin-protein ligase rbh
S28_scaffold_512_curated_5
Methanosarcina horonobensis, Methanosarcina, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

5180..5758
DNA (579bp) protein (193aa)
Conserved protein n=1 Tax=Methanosarcina mazei (strain ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88) RepID=Q8PVX5_METMA
Uncharacterized protein {ECO:0000313|EMBL:AKB80028.1}; TaxID=1434110 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanosarcina.;" source="Methanosarcina horonobensis HB-1 = JCM 15518.;"
hypothetical protein
S28_scaffold_512_curated_6
Methanosarcina acetivorans, Methanosarcina, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(6161..7123)
DNA (963bp) protein (321aa)
Uncharacterized protein n=1 Tax=Methanosarcina acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A) RepID=Q8TSW7_METAC rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:AAM04118.1}; TaxID=188937 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanosarcina.;" source="Methanosarcina acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 /; C2A).;"
S28_scaffold_512_curated_7
Methanosarcina sp. WH1, Methanosarcina, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(7154..7867)
DNA (714bp) protein (238aa)
Uncharacterized protein n=1 Tax=Methanosarcina acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A) RepID=Q8TSW6_METAC rbh
Uncharacterized protein {ECO:0000313|EMBL:AKB20701.1}; TaxID=1434102 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanosarcina.;" source="Methanosarcina sp. WH1.;"
hypothetical protein
S28_scaffold_512_curated_8
Methanosarcina siciliae, Methanosarcina, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(7916..8206)
DNA (291bp) protein (97aa)
Uncharacterized protein n=2 Tax=Methanosarcina mazei RepID=M1PY57_METMZ
Uncharacterized protein {ECO:0000313|EMBL:AKB35206.1}; TaxID=1434118 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanosarcina.;" source="Methanosarcina siciliae C2J.;"
Hypothetical protein
S28_scaffold_512_curated_9
Methanosarcina sp. WWM596, Methanosarcina, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(8355..10460)
DNA (2106bp) protein (702aa)
DNA replication helicase protein MCM n=2 Tax=Methanosarcina mazei RepID=M1P9S5_METMZ rbh
DNA replication helicase protein MCM {ECO:0000313|EMBL:AKB17306.1}; TaxID=1434103 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanosarcina.;" source="Methanosarcina sp. WWM596.;"
DNA replication helicase protein MCM
S28_scaffold_512_curated_10
Methanosarcina sp. 2.H.T.1A.15, Methanosarcina, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(10588..11355)
DNA (768bp) protein (256aa)
SpoU rRNA methylase n=1 Tax=Methanosarcina acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A) RepID=Q8TSW3_METAC rbh
SpoU rRNA methylase rbh
RNA methyltransferase {ECO:0000313|EMBL:KKG15248.1}; TaxID=1483596 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanosarcina.;" source="Methanosarcina sp. 2.H.T.1A.15.;"
S28_scaffold_512_curated_11
Methanosarcina lacustris, Methanosarcina, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(11378..11575)
DNA (198bp) protein (66aa)
Ferredoxin n=2 Tax=Methanosarcina mazei RepID=M1QJU8_METMZ
Ferredoxin
Ferredoxin {ECO:0000313|EMBL:AKB73691.1}; TaxID=1434111 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanosarcina.;" source="Methanosarcina lacustris Z-7289.;"
Displaying 11 items

View Taxonomy