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S28_scaffold_1575_curated

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Displaying 7 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
S28_scaffold_1575_curated_1
Methanosarcina horonobensis, Methanosarcina, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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1..351
DNA (351bp) protein (117aa)
tRNA pseudouridine synthase Pus10 {ECO:0000256|HAMAP-Rule:MF_01893}; EC=5.4.99.- {ECO:0000256|HAMAP-Rule:MF_01893};; tRNA pseudouridine 54/55 synthase {ECO:0000256|HAMAP-Rule:MF_01893}; TaxID=1434110 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanosarcina.;" source="Methanosarcina horonobensis HB-1 = JCM 15518.;"
tRNA pseudouridine synthase Pus10 n=1 Tax=Methanosarcina mazei Tuc01 RepID=M1PZY0_METMZ
tRNA pseudouridine 55 synthase Archaea
S28_scaffold_1575_curated_2
Methanosarcina horonobensis, Methanosarcina, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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641..934
DNA (294bp) protein (98aa)
50S ribosomal protein L21e n=1 Tax=Methanosarcina acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A) RepID=RL21_METAC
50S ribosomal protein L21e {ECO:0000256|HAMAP-Rule:MF_00369, ECO:0000256|SAAS:SAAS00016423}; TaxID=1434110 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanosarcina.;" source="Methanosarcina horonobensis HB-1 = JCM 15518.;"
50S ribosomal protein L21
S28_scaffold_1575_curated_3
Methanosarcina sp. 2.H.T.1A.3, Methanosarcina, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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1407..1760
DNA (354bp) protein (118aa)
DNA-directed RNA polymerase subunit F {ECO:0000313|EMBL:KKG17075.1}; EC=2.7.7.6 {ECO:0000313|EMBL:KKG17075.1};; TaxID=1483597 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanosarcina.;" source="Methanosarcina sp. 2.H.T.1A.3.;"
Uncharacterized protein n=1 Tax=Methanosarcina acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A) RepID=Q8TQU5_METAC
hypothetical protein
S28_scaffold_1575_curated_4
Methanosarcina lacustris, Methanosarcina, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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2257..2850
DNA (594bp) protein (198aa)
Uncharacterized protein n=1 Tax=Methanosarcina acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A) RepID=Q8TQU7_METAC rbh
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AKB74145.1}; TaxID=1434111 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanosarcina.;" source="Methanosarcina lacustris Z-7289.;"
S28_scaffold_1575_curated_5
Methanosarcina sp. 1.H.T.1A.1, Methanosarcina, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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3406..4029
DNA (624bp) protein (208aa)
Probable ribosomal RNA small subunit methyltransferase A n=1 Tax=Methanosarcina acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A) RepID=RSMA_METAC rbh
16S rRNA methyltransferase {ECO:0000313|EMBL:KKH94156.1}; TaxID=1483602 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanosarcina.;" source="Methanosarcina sp. 1.H.T.1A.1.;"
ksgA; dimethyladenosine transferase rbh
S28_scaffold_1575_curated_6
Methanosarcina mazei, Methanosarcina, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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4033..4641
DNA (609bp) protein (203aa)
Protein-N(5)-glutamine methyltransferase PrmC, methylates polypeptide chain release factors RF1 and RF2 n=1 Tax=Methanosarcina mazei Tuc01 RepID=M1PBI3_METMZ rbh
Putative methyltransferase {ECO:0000313|EMBL:AKB69482.1}; TaxID=1434114 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanosarcina.;" source="Methanosarcina mazei LYC.;"
Protein-N(5)-glutamine methyltransferase PrmC, methylates polypeptide chain release factors RF1 and RF2 rbh
S28_scaffold_1575_curated_7
Methanosarcina mazei, Methanosarcina, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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4948..5334
DNA (387bp) protein (129aa)
NADH pyrophosphatase {ECO:0000313|EMBL:AKB72181.1}; EC=3.6.1.22 {ECO:0000313|EMBL:AKB72181.1};; TaxID=1434113 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanosarcina.;" source="Methanosarcina mazei C16.;"
Phosphohydrolase n=1 Tax=Methanosarcina mazei (strain ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88) RepID=Q8PU15_METMA
phosphohydrolase
Displaying 7 items

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