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S28_scaffold_251_curated

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Displaying 25 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
S28_scaffold_251_curated_1
RIFOXYC1_FULL_Spirochaetes_54_7_curated, Spirochaetales, Spirochaetia, Spirochatetes, Bacteria

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1..528
DNA (528bp) protein (176aa)
FolC bifunctional protein id=2825056 bin=GWB1_Spirochaetes_59_5 species=Treponema caldaria genus=Treponema taxon_order=Spirochaetales taxon_class=Spirochaetia phylum=Spirochaetes tax=GWB1_Spirochaetes_59_5 organism_group=Spirochaetes
FolC bifunctional protein
Tax=RIFOXYC1_FULL_Spirochaetes_54_7_curated
S28_scaffold_251_curated_2
GWB1_Spirochaetes_59_5_curated, Spirochaetales, Spirochaetia, Spirochatetes, Bacteria

Not on your lists

comp(545..1585)
DNA (1041bp) protein (347aa)
Response regulator receiver modulated diguanylate cyclase id=2825059 bin=GWB1_Spirochaetes_59_5 species=Spirochaeta smaragdinae genus=Spirochaeta taxon_order=Spirochaetales taxon_class=Spirochaetia phylum=Spirochaetes tax=GWB1_Spirochaetes_59_5 organism_group=Spirochaetes rbh
response regulator receiver modulated diguanylate cyclase
Tax=GWB1_Spirochaetes_59_5_curated
S28_scaffold_251_curated_3
RIFOXYC1_FULL_Spirochaetes_54_7_curated, Spirochaetales, Spirochaetia, Spirochatetes, Bacteria

Not on your lists

comp(1614..2240)
DNA (627bp) protein (209aa)
Putative uncharacterized protein id=2825061 bin=GWB1_Spirochaetes_59_5 species=Desulfotomaculum gibsoniae genus=Desulfotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWB1_Spirochaetes_59_5 organism_group=Spirochaetes
hypothetical protein
Tax=RIFOXYC1_FULL_Spirochaetes_54_7_curated
S28_scaffold_251_curated_4
unknown

Not on your lists

2782..3339
DNA (558bp) protein (186aa)

This feature has no annotations

S28_scaffold_251_curated_5
RIFOXYC1_FULL_Spirochaetes_54_7_curated, Spirochaetales, Spirochaetia, Spirochatetes, Bacteria

Not on your lists

comp(3173..3598)
DNA (426bp) protein (142aa)
id=2885743 bin=GWF1_Spirochaetes_60_12 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF1_Spirochaetes_60_12 organism_group=Spirochaetes
Tax=RIFOXYC1_FULL_Spirochaetes_54_7_curated
S28_scaffold_251_curated_6
RIFOXYC1_FULL_Spirochaetes_54_7_curated, Spirochaetales, Spirochaetia, Spirochatetes, Bacteria

Not on your lists

comp(3659..4609)
DNA (951bp) protein (317aa)
Tax=RIFOXYC1_FULL_Spirochaetes_54_7_curated
S28_scaffold_251_curated_7
RIFOXYC1_FULL_Spirochaetes_54_7_curated, Spirochaetales, Spirochaetia, Spirochatetes, Bacteria

Not on your lists

comp(4613..4795)
DNA (183bp) protein (61aa)
Tax=RIFOXYC1_FULL_Spirochaetes_54_7_curated
S28_scaffold_251_curated_8
RIFOXYC1_FULL_Spirochaetes_54_7_curated, Spirochaetales, Spirochaetia, Spirochatetes, Bacteria

Not on your lists

comp(5044..5286)
DNA (243bp) protein (81aa)
Putative uncharacterized protein id=2885736 bin=GWF1_Spirochaetes_60_12 species=Treponema denticola genus=Treponema taxon_order=Spirochaetales taxon_class=Spirochaetia phylum=Spirochaetes tax=GWF1_Spirochaetes_60_12 organism_group=Spirochaetes
hypothetical protein
Tax=RIFOXYC1_FULL_Spirochaetes_54_7_curated
S28_scaffold_251_curated_9
RIFOXYC1_FULL_Spirochaetes_54_7_curated, Spirochaetales, Spirochaetia, Spirochatetes, Bacteria

Not on your lists

comp(5372..5884)
DNA (513bp) protein (171aa)
Putative uncharacterized protein id=2825074 bin=GWB1_Spirochaetes_59_5 species=Treponema caldaria genus=Treponema taxon_order=Spirochaetales taxon_class=Spirochaetia phylum=Spirochaetes tax=GWB1_Spirochaetes_59_5 organism_group=Spirochaetes
TM2 domain-containing protein
Tax=RIFOXYC1_FULL_Spirochaetes_54_7_curated
S28_scaffold_251_curated_10
GWB1_Spirochaetes_60_80_curated, Spirochaetes, Bacteria

Not on your lists

6137..7525
DNA (1389bp) protein (463aa)
asparaginyl-tRNA synthetase (EC:6.1.1.22) rbh
Asparagine--tRNA ligase id=2885732 bin=GWF1_Spirochaetes_60_12 species=Treponema caldaria genus=Treponema taxon_order=Spirochaetales taxon_class=Spirochaetia phylum=Spirochaetes tax=GWF1_Spirochaetes_60_12 organism_group=Spirochaetes rbh
Tax=GWB1_Spirochaetes_60_80_curated
S28_scaffold_251_curated_11
RIFOXYC1_FULL_Spirochaetes_54_7_curated, Spirochaetales, Spirochaetia, Spirochatetes, Bacteria

Not on your lists

7532..8782
DNA (1251bp) protein (417aa)
Serine-type D-Ala-D-Ala carboxypeptidase DacC id=2825080 bin=GWB1_Spirochaetes_59_5 species=Treponema primitia genus=Treponema taxon_order=Spirochaetales taxon_class=Spirochaetia phylum=Spirochaetes tax=GWB1_Spirochaetes_59_5 organism_group=Spirochaetes rbh
D-alanyl-D-alanine carboxypeptidase
Tax=RIFOXYC1_FULL_Spirochaetes_54_7_curated
S28_scaffold_251_curated_12
GWB1_Spirochaetes_60_80_curated, Spirochaetes, Bacteria

Not on your lists

comp(8875..9759)
DNA (885bp) protein (295aa)
HhH-GPD family protein id=3792485 bin=GWB1_Spirochaetales_60_80 species=Treponema brennaborense genus=Treponema taxon_order=Spirochaetales taxon_class=Spirochaetia phylum=Spirochaetes tax=GWB1_Spirochaetales_60_80 organism_group=Spirochaetes
HhH-GPD family protein
Tax=GWB1_Spirochaetes_60_80_curated
S28_scaffold_251_curated_13
RIFOXYC1_FULL_Spirochaetes_54_7_curated, Spirochaetales, Spirochaetia, Spirochatetes, Bacteria

Not on your lists

comp(9756..10358)
DNA (603bp) protein (201aa)
IscU protein id=2885722 bin=GWF1_Spirochaetes_60_12 species=Treponema azotonutricium genus=Treponema taxon_order=Spirochaetales taxon_class=Spirochaetia phylum=Spirochaetes tax=GWF1_Spirochaetes_60_12 organism_group=Spirochaetes rbh
IscU protein
Tax=RIFOXYC1_FULL_Spirochaetes_54_7_curated
S28_scaffold_251_curated_14
RIFOXYC1_FULL_Spirochaetes_54_7_curated, Spirochaetales, Spirochaetia, Spirochatetes, Bacteria

Not on your lists

comp(10378..11556)
DNA (1179bp) protein (393aa)
cysteine desulfurase (EC:2.8.1.7) rbh
Cysteine desulfurase id=3792492 bin=GWB1_Spirochaetales_60_80 species=Treponema primitia genus=Treponema taxon_order=Spirochaetales taxon_class=Spirochaetia phylum=Spirochaetes tax=GWB1_Spirochaetales_60_80 organism_group=Spirochaetes rbh
Tax=RIFOXYC1_FULL_Spirochaetes_54_7_curated
S28_scaffold_251_curated_15
RIFOXYC1_FULL_Spirochaetes_54_7_curated, Spirochaetales, Spirochaetia, Spirochatetes, Bacteria

Not on your lists

comp(11553..11912)
DNA (360bp) protein (120aa)
Transcriptional regulator id=1282440 bin=GWE1_Spirochaete_60_18 species=Mogibacterium sp. CM50 genus=Mogibacterium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWE1_Spirochaete_60_18 organism_group=Spirochaetes
BadM/Rrf2 family transcriptional regulator
Tax=RIFOXYC1_FULL_Spirochaetes_54_7_curated
S28_scaffold_251_curated_16
RIFOXYC1_FULL_Spirochaetes_54_7_curated, Spirochaetales, Spirochaetia, Spirochatetes, Bacteria

Not on your lists

comp(12036..12914)
DNA (879bp) protein (293aa)
Inner-membrane translocator id=1308029 bin=GWE1_Spirochaete_60_18 species=Spirochaeta smaragdinae genus=Spirochaeta taxon_order=Spirochaetales taxon_class=Spirochaetia phylum=Spirochaetes tax=GWE1_Spirochaete_60_18 organism_group=Spirochaetes
inner-membrane translocator
Tax=RIFOXYC1_FULL_Spirochaetes_54_7_curated
S28_scaffold_251_curated_17
RIFOXYC1_FULL_Spirochaetes_54_7_curated, Spirochaetales, Spirochaetia, Spirochatetes, Bacteria

Not on your lists

comp(12911..13960)
DNA (1050bp) protein (350aa)
ABC-type uncharacterized transport system, permease component id=2989671 bin=GWF1_Spirochaetes_60_12 species=unknown genus=Mesotoga taxon_order=Thermotogales taxon_class=Thermotogae phylum=Thermotogae tax=GWF1_Spirochaetes_60_12 organism_group=Spirochaetes rbh
ABC transporter permease
Tax=RIFOXYC1_FULL_Spirochaetes_54_7_curated
S28_scaffold_251_curated_18
RIFOXYC1_FULL_Spirochaetes_54_7_curated, Spirochaetales, Spirochaetia, Spirochatetes, Bacteria

Not on your lists

comp(13957..15054)
DNA (1098bp) protein (366aa)
ABC transporter related id=3001213 bin=GWB1_Spirochaetales_60_80 species=Kineococcus radiotolerans genus=Kineococcus taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWB1_Spirochaetales_60_80 organism_group=Spirochaetes rbh
macrolide ABC transporter ATP-binding protein
Tax=RIFOXYC1_FULL_Spirochaetes_54_7_curated
S28_scaffold_251_curated_19
unknown

Not on your lists

15151..15495
DNA (345bp) protein (115aa)

This feature has no annotations

S28_scaffold_251_curated_20
GWB1_Spirochaetes_60_80_curated, Spirochaetes, Bacteria

Not on your lists

comp(15482..16498)
DNA (1017bp) protein (339aa)
MemBrane lipoprotein TpN38(b) id=3001212 bin=GWB1_Spirochaetales_60_80 species=Treponema primitia genus=Treponema taxon_order=Spirochaetales taxon_class=Spirochaetia phylum=Spirochaetes tax=GWB1_Spirochaetales_60_80 organism_group=Spirochaetes rbh
basic membrane lipoprotein
Tax=GWB1_Spirochaetes_60_80_curated
S28_scaffold_251_curated_21
GWB1_Spirochaetes_60_80_curated, Spirochaetes, Bacteria

Not on your lists

16621..17085
DNA (465bp) protein (155aa)
Putative transcriptional regulator id=2989668 bin=GWF1_Spirochaetes_60_12 species=Sphaerochaeta pleomorpha genus=Sphaerochaeta taxon_order=Spirochaetales taxon_class=Spirochaetia phylum=Spirochaetes tax=GWF1_Spirochaetes_60_12 organism_group=Spirochaetes
MerR family transcriptional regulator
Tax=GWB1_Spirochaetes_60_80_curated
S28_scaffold_251_curated_22
GWB1_Spirochaetes_60_80_curated, Spirochaetes, Bacteria

Not on your lists

17089..18510
DNA (1422bp) protein (474aa)
Pentulose/hexulose kinase id=1308024 bin=GWE1_Spirochaete_60_18 species=Sphaerochaeta pleomorpha genus=Sphaerochaeta taxon_order=Spirochaetales taxon_class=Spirochaetia phylum=Spirochaetes tax=GWE1_Spirochaete_60_18 organism_group=Spirochaetes rbh
pentulose/hexulose kinase
Tax=GWB1_Spirochaetes_60_80_curated
S28_scaffold_251_curated_23
RIFOXYC1_FULL_Spirochaetes_54_7_curated, Spirochaetales, Spirochaetia, Spirochatetes, Bacteria

Not on your lists

18554..19510
DNA (957bp) protein (319aa)
Auxin Efflux Carrier id=2989666 bin=GWF1_Spirochaetes_60_12 species=Methanofollis liminatans genus=Methanofollis taxon_order=Methanomicrobiales taxon_class=Methanomicrobia phylum=Euryarchaeota tax=GWF1_Spirochaetes_60_12 organism_group=Spirochaetes rbh
auxin efflux carrier
Tax=RIFOXYC1_FULL_Spirochaetes_54_7_curated
S28_scaffold_251_curated_24
RIFOXYC1_FULL_Spirochaetes_54_7_curated, Spirochaetales, Spirochaetia, Spirochatetes, Bacteria

Not on your lists

19694..21451
DNA (1758bp) protein (586aa)
Putative ABC transporter (Membrane (N-terminal),atp_bind (C-terminal)) id=2989663 bin=GWF1_Spirochaetes_60_12 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF1_Spirochaetes_60_12 organism_group=Spirochaetes rbh
ABC transporter
Tax=RIFOXYC1_FULL_Spirochaetes_54_7_curated
S28_scaffold_251_curated_25
RIFOXYC1_FULL_Spirochaetes_54_7_curated, Spirochaetales, Spirochaetia, Spirochatetes, Bacteria

Not on your lists

21448..21690
DNA (243bp) protein (81aa)
Putative ABC transporter, transmembrane region:ABC transporter related id=3001070 bin=GWB1_Spirochaetales_60_80 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWB1_Spirochaetales_60_80 organism_group=Spirochaetes
hypothetical protein
Tax=RIFOXYC1_FULL_Spirochaetes_54_7_curated
Displaying 25 items

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